Quick Start Example Project Description

Predicted protein sequences of Lactococcus lactis is our query database. We are going to compare the Lactococcus lactis proteins with proteins from three other bacterial genomes: Bacillus subtilis, Escherichia coli, and Pseudomonas aeruginosa.

The positions of Lactococcus lactis protein sequences in the 3D space will be determined by their relationship (sequence similarity/identity) with the protein sequences of the three other genomes.

The goals of this project are:

1. Identification of the Lactococcus lactis proteins with highly similar homologs in the other three species
2. Identification of Lactococcus lactis specific proteins
3. Identification of Lactococcus lactis genes, which are only present in one or two of the other species

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