The first two rows are added here for explanation of the content IDs from the query FASTA file annotations from the query FASTA file ID of the best hit from the red target database e value (exponent) for the hit in the red database annotation for the hit in the red database ID of the best hit in the green database e value (exponent) for the hit in the green database annotation for the hit in the green database ID of the best hit in the blue database e value (exponent) for the hit in the blue database annotation for the hit in the blue database cottonTMinusU_Contig106 "T10A12+(210,663) T5E01-(1,429) " TC168732 100 "homologue to SP|P46611|METK_ORYSA S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1), complete" 13354947 100 "gb|BG445295.1|BG445295 GA__Ea0027J13f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0027J13f, mRNA sequence" At4g01850 100 "S-adenosylmethionine synthase 2 [ T7B11.11 NP_192094.1 15234354 CDS reverse ] [MPSS: callus 334 tpm, flower 436 tpm, leaves 286 tpm, root 621 tpm, silique 665 tpm (CFLRS)] " cottonUV_UV9G08 TC171270 56 "GP|2341061|gb|AAB67607.1| translational initiation factor eIF-4A {Zea mays}, complete" 5046962 100 "gb|AI728110.1|AI728110 BNLGHi9721 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to EUKARYOTIC INITIATION FACTOR 4A-8, mRNA sequence" At3g13920 47 "eukaryotic translation initiation factor 4A-1 (eIF4A-1) [ MDC16.5 NP_566469.1 18400210 CDS reverse ] [MPSS: callus 1059 tpm, flower 1687 tpm, leaves 665 tpm, root 1999 tpm, silique 605 tpm (CFLRS)] " cottonUV_UV9F08 TC173646 67 "similar to GP|11078533|gb|AAG29095.1 Glu-tRNA(Gln) amidotransferase subunit A {Arabidopsis thaliana}, partial (55%)" 5048551 100 "gb|AI729699.1|AI729699 BNLGHi13963 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (D90907) amidase [Synechocystis sp.], mRNA sequence" At3g25660 62 "glutamyl-tRNA amidotransferase subunit A -related [ T5M7.15 NP_189194.1 15230864 CDS reverse ] [MPSS: callus 27 tpm, flower 112 tpm, leaves 85 tpm, root 22 tpm, silique 132 tpm (CFLRS)] " cottonUV_UV9E01 TC174381 40 "similar to GP|21554411|gb|AAM63516.1 ribosomal protein-like {Arabidopsis thaliana}, partial (98%)" 21096875 100 "gb|BQ409188.1|BQ409188 GA__Ed0017C06r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0017C06r, mRNA sequence" At5g15750 34 "ribosomal protein S4/S9 related [ F14F8.130 NP_568321.1 18417773 CDS forward ] [MPSS: callus 66 tpm, flower 19 tpm, leaves 39 tpm, root 82 tpm, silique 41 tpm (CFLRS)] " cottonUV_UV9C11 TC179980 74 alcohol dehydrogenase; ADH1-1F (aa 1-379); alcohol dehydrogenase 1; alcohol dehydrogenase 1 [Zea mays subsp. mays]; alcohol dehydrogenase [Zea mays subsp. mexicana] 21098026 100 "gb|BQ410339.1|BQ410339 GA__Ed0030A07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0030A07f, mRNA sequence" At1g77120 63 "alcohol dehydrogenase (ADH) [ F22K20.19 NP_177837.1 15223838 CDS forward ] [MPSS: callus 955 tpm, flower 19 tpm, leaves 1 tpm, root 25 tpm, silique 7 tpm (CFLRS)] " cottonUV_UV9C06 TC169585 46 "homologue to PIR|T45902|T45902 inorganic pyrophosphatase-like protein - Arabidopsis thaliana, partial (91%)" 13246798 100 "gb|BE054915.2|BE054915 GA__Ea0035G12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0035G12f, mRNA sequence" At3g53620 41 "inorganic pyrophosphatase -related protein [ F4P12.320 NP_190930.1 15231849 CDS forward ] [MPSS: callus 394 tpm, flower 398 tpm, leaves 86 tpm, root 145 tpm, silique 93 tpm (CFLRS)] " cottonUV_UV9B08 TC171034 34 "homologue to GP|15528779|dbj|BAB64820. development regulation gene OsNAC4 {Oryza sativa (japonica cultivar-group)}, partial (68%)" 13351981 100 "gb|BG442329.1|BG442329 GA__Ea0016J20f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0016J20f, mRNA sequence" At5g13180 58 "No apical meristem (NAM) protein family [ T19L5.140 NP_196822.1 15240042 CDS forward ] [MPSS: callus 131 tpm, flower 36 tpm, leaves 179 tpm, root 319 tpm, silique 29 tpm (CFLRS)] " cottonUV_UV9A06 TC182299 63 "similar to GP|21262150|emb|CAD32683. acyl-[acyl-carrier protein} thioesterase {Triticum aestivum], partial (71%)" 18099438 100 "gb|BM358692.1|BM358692 GA__Ea0011P16r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0011P16r, mRNA sequence" At3g25110 63 "acyl-(acyl carrier protein) thioesterase [ MJL12.9 NP_189147.1 15230256 CDS reverse ] [MPSS: callus 32 tpm, flower 36 tpm, leaves 11 tpm, root 96 tpm, silique 26 tpm (CFLRS)] " cottonUV_UV8F08 BG320037 33 21097036 100 "gb|BQ409349.1|BQ409349 GA__Ed0018F12r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0018F12r, mRNA sequence" At5g06660 39 "expressed protein [ F15M7.19 NP_196284.1 15240119 CDS forward ] [MPSS: callus 24 tpm, flower 33 tpm, leaves 32 tpm, root 157 tpm, silique 98 tpm (CFLRS)] " cottonUV_UV6H04 TC182710 63 "homologue to GP|14326529|gb|AAK60309.1 At1g64230/F22C12_17 {Arabidopsis thaliana}, complete" 5048789 100 "gb|AI729937.1|AI729937 BNLGHi5753 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to UBIQUITIN-CONJUGATING ENZYME E2-17 KD 8, mRNA sequence" At4g27960 53 "ubiquitin-conjugating enzyme 9 (UBC9) [ T13J8.70 NP_849462.1 30687803 CDS reverse ] [MPSS: callus 265 tpm, flower 139 tpm, leaves 164 tpm, root 331 tpm, silique 349 tpm (CFLRS)] " cottonUV_UV6E01 TC180124 79 UDP-glucose:D-fructose 2-glucosyl-transferase; sucrose synthase; sus1 gene product; sucrose synthase 2 21099706 100 "gb|BQ412019.1|BQ412019 GA__Ed0053A09r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0053A09r, mRNA sequence" At5g20830 72 "sucrose synthase (UDP-glucose-fructose glucosyltransferase/sucrose-UDP glucosyltransferase/SUS1) [ T1M15.230 NP_197583.1 15242073 CDS reverse ] [MPSS: callus 715 tpm, flower 248 tpm, leaves 9 tpm, root 550 tpm, silique 270 tpm (CFLRS)] " cottonUV_UV5H02 TC169111 41 DnaJ-related protein ZMDJ1 11203107 100 "gb|BF272112.1|BF272112 GA__Eb0013O13f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0013O13f, mRNA sequence" At3g44110 33 "DnaJ protein AtJ3 [ F26G5.60 NP_850653.1 30691988 CDS reverse ] [MPSS: callus 255 tpm, flower 170 tpm, leaves 154 tpm, root 133 tpm, silique 131 tpm (CFLRS)] " cottonUV_UV5D10 TC183369 58 "similar to PIR|A85356|A85356 nucleotide sugar epimerase-like protein [imported] - Arabidopsis thaliana, partial (78%)" 21096418 76 "gb|BQ408731.1|BQ408731 GA__Ed0011D08f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0011D08f, mRNA sequence" At3g23820 57 "NAD-dependent epimerase/dehydratase family [ F14O13.9 NP_189024.1 15229524 CDS forward ] [MPSS: callus 43 tpm, flower 247 tpm, leaves 225 tpm, root 262 tpm, silique 277 tpm (CFLRS)] " cottonUV_UV5D07 TC185958 45 "similar to GP|9758905|dbj|BAB09481.1 contains similarity to transcription regulator~gene_id:MRG7.19 {Arabidopsis thaliana}, partial (19%)" 21101371 100 "gb|BQ413684.1|BQ413684 GA__Ed0077F04r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0077F04r, mRNA sequence" At5g18230 44 "expressed protein [ MRG7.19 NP_568361.1 18418549 CDS reverse ] [MPSS: callus 266 tpm, flower 212 tpm, leaves 82 tpm, root 77 tpm, silique 186 tpm (CFLRS)] " cottonUV_UV5C11 TC180603 40 "homologue to GP|2293568|gb|AAB65433.1| HvB12D homolog {Oryza sativa}, partial (94%)" 13245025 100 "gb|BE054883.2|BE054883 GA__Ea0015K16f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0015K16f, mRNA sequence" At3g48140 36 "B12D-related protein [ T24C20.20 NP_190397.1 15228342 CDS forward ] [MPSS: callus 947 tpm, flower 253 tpm, leaves 658 tpm, root 1058 tpm, silique 450 tpm (CFLRS)] " cottonUV_UV5A12 TC186655 41 "similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein 45 {Nicotiana plumbaginifolia}, partial (37%)" 31073306 100 "gb|CA993585.1|CA993585 pAR0912 pAR Gossypium hirsutum cDNA 5', mRNA sequence" At1g11650 36 "RNA binding protein 45 (RBP45), putative [ F25C20.21 NP_849641.1 30682335 CDS forward ] [MPSS: callus 221 tpm, flower 112 tpm, leaves 191 tpm, root 107 tpm, silique 65 tpm (CFLRS)] " cottonUV_UV4G04 TC181122 55 "similar to PIR|B71448|B71448 hypothetical protein - Arabidopsis thaliana, partial (84%)" 13351311 100 "gb|BG441659.1|BG441659 GA__Ea0014C14f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0014C14f, mRNA sequence" At4g17790 46 "expressed protein [ FCAALL.62 NP_567541.1 18414967 CDS forward ] [MPSS: callus 206 tpm, flower 73 tpm, leaves 33 tpm, root 162 tpm, silique 48 tpm (CFLRS)] " cottonUV_UV4D08 TC182311 44 "homologue to GP|14595719|gb|AAK70918.1 hypothetical protein {Oryza sativa}, partial (88%)" 21098323 100 "gb|BQ410636.1|BQ410636 GA__Ed0032G11r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0032G11r, mRNA sequence" At3g62600 34 "expressed protein [ F26K9.30 NP_191819.1 15228802 CDS reverse ] [MPSS: callus 131 tpm, flower 168 tpm, leaves 84 tpm, root 208 tpm, silique 106 tpm (CFLRS)] " cottonUV_UV4C11 TC179975 91 cytoplasmic malate dehydrogenase; malate dehydrogenase [Zea mays] 11199688 100 "gb|BF268693.1|BF268693 GA__Eb0002J19f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0002J19f, mRNA sequence" At5g43330 74 "malate dehydrogenase, cytosolic, putative [ MNL12.18 NP_199147.1 15239843 CDS forward ] [MPSS: callus 30 tpm, flower 67 tpm, leaves 36 tpm, root 15 tpm, silique 30 tpm (CFLRS)] " cottonUV_UV4B11 TC169228 71 superoxide dismutase 4A; superoxide dismutase-4A 5050031 100 "gb|AI731179.1|AI731179 BNLGHi8593 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to SUPEROXIDE DISMUTASE [CU-ZN], mRNA sequence" At1g08830 58 "copper/zinc superoxidase dismutase (CSD1) [ F22O13.32 NP_172360.1 15223944 CDS forward ] [MPSS: callus 179 tpm, flower 255 tpm, leaves 62 tpm, root 50 tpm, silique 180 tpm (CFLRS)] " cottonUV_UV2E12 TC181674 68 "homologue to GP|22830947|dbj|BAC15812. putative secretory carrier membrane protein {Oryza sativa (japonica cultivar-group)}, complete" 5050478 100 "gb|AI731626.1|AI731626 BNLGHi10288 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (AF018093) similarity to SCAMP37 [Pisum sativum], mRNA sequence" At2g20840 59 "secretory carrier-associated membrane protein -related [ F5H14.19 NP_179680.1 15226410 CDS reverse ] [MPSS: callus 11 tpm, flower 67 tpm, leaves 13 tpm, root 60 tpm, silique 65 tpm (CFLRS)] " cottonUV_Contig89 "UV10B01-(63,502) UV9F01+(1,466) " TC180094 48 "GP|2293566|gb|AAB65432.1| ADP-ribosylation factor 1 {Oryza sativa}, complete" 21099818 100 "gb|BQ412131.1|BQ412131 GA__Ed0054D11r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0054D11r, mRNA sequence" At2g47170 39 "ADP-ribosylation factor 1 (ARF1) [ T3D7.2 NP_182239.1 15226521 CDS forward ] [MPSS: callus 620 tpm, flower 836 tpm, leaves 500 tpm, root 1309 tpm, silique 720 tpm (CFLRS)] " cottonUV_Contig80 "UV10C11-(323,557) UV4G08-(40,550) UV5C06-(51,546) UV5E04-(78,534) UV5G10-(208,535) UV6B05+(4,424) UV8G02-(1,533) " TC169861 100 elongation factor 1 alpha 21091954 100 "gb|BQ404267.1|BQ404267 GA__Ed0068D12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0068D12f, mRNA sequence" At5g60390 93 "elongation factor 1-alpha (EF-1-alpha) [ MUF9.8 NP_200847.1 15239308 CDS forward ] [MPSS: callus 3256 tpm, flower 6124 tpm, leaves 2572 tpm, root 7946 tpm, silique 4629 tpm (CFLRS)] " cottonUV_Contig77 "UV3H01-(25,515) UV8B06-(1,521) UV9C04-(96,524) " TC171351 41 "homologue to SP|P93407|SODP_ORYSA Superoxide dismutase [Cu-Zn] chloroplast precursor (EC 1.15.1.1). [Rice] {Oryza sativa}, partial (63%)" 21103791 100 "gb|BQ416104.1|BQ416104 GA__Ed0107A06r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0107A06r, mRNA sequence" At2g28190 33 "copper/zinc superoxide dismutase (CSD2) [ F24D13.2 NP_565666.1 18401659 CDS forward ] [MPSS: callus 100 tpm, flower 664 tpm, leaves 441 tpm, root 334 tpm, silique 692 tpm (CFLRS)] " cottonUV_Contig76 "UV10G06+(57,209) UV8A03+(1,562) UV9D07+(57,407) UV9F12+(57,457) " TC182593 43 "similar to PIR|JC7234|JC7234 27k vesicle-associated membrane protein-associated protein - curled-leaved tobacco, partial (79%)" 13355383 100 "gb|BG445731.1|BG445731 GA__Ea0029F15f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0029F15f, mRNA sequence" At2g45140 45 "VAMP (vesicle-associated membrane protein)-associated protein, putative [ T14P1.5 NP_182039.1 15225415 CDS forward ] [MPSS: callus 77 tpm, flower 67 tpm, leaves 21 tpm, root 45 tpm, silique 39 tpm (CFLRS)] " cottonUV_Contig64 "UV10C06-(147,540) UV5B07+(246,542) UV6D03+(1,478) UV6E04+(246,542) UV6F05-(246,542) " TC185858 96 "similar to GP|4406372|gb|AAD19957.1| thiosulfate sulfurtransferase {Datisca glomerata}, partial (79%)" 5046310 100 "gb|AI727458.1|AI727458 BNLGHi8030 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (AC002986) Similar to E. coli sulfurtransferase (rhodanese) gb|AE00338. ESTs gb|T03984, gb|T03983 and gb|W43228 come from this gene. [Arabidopsis thaliana], mRNA sequence" At1g79230 82 "mercaptopyruvate sulfurtransferase (Mst1/Rdh1) [ YUP8H12R.17 NP_565203.1 18412307 CDS forward ] [MPSS: callus 138 tpm, flower 165 tpm, leaves 91 tpm, root 117 tpm, silique 186 tpm (CFLRS)] " cottonUV_Contig61 "UV6B08+(1,412) UV8A06-(1,482) " TC181757 66 legumain-like protease 21095983 100 "gb|BQ408296.1|BQ408296 GA__Ed0008A09f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0008A09f, mRNA sequence" At4g32940 67 "gamma-VPE (vacuolar processing enzyme) [ F26P21.60 NP_195020.1 15233996 CDS reverse ] [MPSS: callus 299 tpm, flower 114 tpm, leaves 92 tpm, root 76 tpm, silique 62 tpm (CFLRS)] " cottonUV_Contig60 "UV10A08+(3,376) UV4A01-(8,502) UV4C02+(1,493) UV6A10+(1,328) UV6F09+(1,383) UV6G07-(78,558) " TC189572 72 "homologue to GP|13195452|gb|AAK15703.1 GTP-binding protein {Oryza sativa}, partial (74%)" 21102975 100 "gb|BQ415288.1|BQ415288 GA__Ed0097D04r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0097D04r, mRNA sequence" At5g45750 66 "GTP-binding protein, putative [ MRA19.18 NP_199387.1 15242483 CDS forward ] [MPSS: callus 47 tpm, flower 103 tpm, leaves 38 tpm, root 134 tpm, silique 126 tpm (CFLRS)] " cottonUV_Contig57 "UV10B10-(321,674) UV10C01+(35,406) UV10D04+(211,612) UV10F02-(229,654) UV10F04+(211,562) UV2A03+(37,455) UV2A12+(38,335) UV2C03+(212,692) UV2C11-(50,471) UV2G02+(211,607) UV2H10+(32,326) UV3A08-(35,481) UV3C06+(29,485) UV3E01+(32,484) UV3H05+(41,492) UV3H10+(211,666) UV3H12+(34,420) UV4A11+(211,620) UV4B02+(41,489) UV4D06+(36,399) UV4F03-(46,470) UV4F11-(50,470) UV4G05+(211,644) UV4G06-(64,501) UV5A01+(34,435) UV5A02+(211,616) UV5A07+(34,480) UV5E03+(29,486) UV5E12+(1,471) UV5H05+(33,441) UV5H06+(33,473) UV6B03+(35,456) UV6C05-(54,475) UV6G01+(33,440) UV6G11+(33,286) UV6H06+(33,528) UV6H07+(211,607) UV6H08-(290,695) UV7C06+(211,690) UV7D05+(36,415) UV7G04-(271,681) UV8B01+(41,490) UV8C03-(33,473) UV8G05+(37,483) UV9B02-(321,656) " TC180835 49 "similar to GP|14488088|gb|AAK63864.1 AT4g01150/F2N1_18 {Arabidopsis thaliana}, partial (54%)" 31407503 100 "gb|CD486538.1|CD486538 CRH4.1A04 Cotton Root and Hypocotyl Lambda ZIPLOX Library (CRH) Gossypium hirsutum cDNA clone CRH4.1A04 5' similar to expressed protein, mRNA sequence" At4g01150 50 "expressed protein [ F2N1.18 NP_567210.1 18411555 CDS forward ] [MPSS: callus 3 tpm, flower 216 tpm, leaves 960 tpm, root 7 tpm, silique 751 tpm (CFLRS)] " cottonUV_Contig54 "UV2D05+(1,391) UV3G07+(15,405) UV5D09+(1,391) UV9G03-(226,763) " TC169585 74 "homologue to PIR|T45902|T45902 inorganic pyrophosphatase-like protein - Arabidopsis thaliana, partial (91%)" 13244203 100 "gb|BE052012.2|BE052012 GA__Ea0003C05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0003C05f, mRNA sequence" At3g53620 61 "inorganic pyrophosphatase -related protein [ F4P12.320 NP_190930.1 15231849 CDS forward ] [MPSS: callus 394 tpm, flower 398 tpm, leaves 86 tpm, root 145 tpm, silique 93 tpm (CFLRS)] " cottonUV_Contig53 "UV4F04+(25,270) UV5C12-(1,446) UV6D04-(25,243) UV6E03-(351,713) UV7B04-(286,714) UV9G05+(25,270) " TC189652 42 "similar to PIR|D84559|D84559 probable peptide methionine sulfoxide reductase [imported] - Arabidopsis thaliana, partial (70%)" 13354356 100 "gb|BG444704.1|BG444704 GA__Ea0025E17f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0025E17f, mRNA sequence" At2g18030 42 "peptide methionine sulfoxide reductase -related [ T27K22.10 NP_179394.1 15227955 CDS forward ] [MPSS: callus 30 tpm, flower 11 tpm, leaves 16 tpm, root 149 tpm, silique 74 tpm (CFLRS)] " cottonUV_Contig45 "UV10A02+(6,349) UV4G07+(1,347) " TC181067 43 translation initiation factor eIF-4A 13246968 100 "gb|BE053417.2|BE053417 GA__Ea0035P04f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0035P04f, mRNA sequence" At1g72730 49 "eukaryotic translation initiation factor 4A (eIF4A), putative [ F28P22.8 NP_177417.1 15218574 CDS reverse ] [MPSS: callus 75 tpm, flower 92 tpm, leaves 16 tpm, root 134 tpm, silique 13 tpm (CFLRS)] " cottonUV_Contig44 "UV4F01+(1,356) UV8E06+(213,460) " TC174894 37 "similar to GP|20466738|gb|AAM20686.1 putative protein {Arabidopsis thaliana}, partial (26%)" 21103865 100 "gb|BQ416178.1|BQ416178 GA__Ed0108A01r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0108A01r, mRNA sequence" At4g33945 34 "expressed protein [ F17I5.130 NP_567944.1 18418335 CDS forward ] [MPSS: callus 27 tpm, flower 29 tpm, leaves 60 tpm, root 77 tpm, silique 21 tpm (CFLRS)] " cottonUV_Contig42 "UV10A06+(350,660) UV3G03+(350,813) UV4E03-(1,301) UV4F09+(1,553) UV5B06+(16,315) UV5F07+(350,813) UV8G07+(350,854) UV8H10+(371,853) " TC187966 44 "weakly similar to PIR|T00967|T00967 hypothetical protein At2g26340 [imported] - Arabidopsis thaliana, partial (53%)" 5044407 100 "gb|AI725475.1|AI725475 BNLGHi12255 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (AF069300) contains similarity to Nicotiana tabacum hin1 (GB:Y07563) [Arabidopsis thaliana], mRNA sequence" At2g26340 47 "expressed protein [ T9J22.1 NP_565620.1 18401099 CDS forward ] [MPSS: callus 5 tpm, flower 34 tpm, leaves 137 tpm, root 10 tpm, silique 93 tpm (CFLRS)] " cottonUV_Contig30 "UV3H04+(1,400) UV5A11-(1,400) UV9A09-(1,400) " 270_./projects/cotton/maize_tigr_ass 81 glycine cleavage complex T-protein [Zea mays] 13351608 100 "gb|BG441956.1|BG441956 GA__Ea0015E03f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0015E03f, mRNA sequence" At1g11860 69 "aminomethyltransferase-related precursor protein [ F12F1.30 NP_849646.1 30682471 CDS forward ] [MPSS: callus 36 tpm, flower 769 tpm, leaves 1233 tpm, root 182 tpm, silique 1411 tpm (CFLRS)] " cottonUV_Contig29 "UV10B08-(283,731) UV10E12-(326,674) UV10G04-(408,690) UV2G03+(282,727) UV2G05+(253,672) UV3B10-(345,755) UV3C08+(289,739) UV3D07-(306,729) UV3G01-(9,480) UV3G08-(1,480) UV4G02-(511,696) UV5D08-(306,733) UV5E10-(287,683) UV5G09-(257,678) UV6A03-(386,672) UV6C12-(374,690) UV6F01-(55,481) UV6H10-(349,709) UV7A07-(513,685) UV7B03-(169,481) UV7E09-(301,675) UV7H06-(369,482) UV8A01-(359,740) UV8D11-(169,685) UV8H06-(218,754) UV9D12+(258,746) UV9F11-(287,688) UV9H09+(303,704) " TC180566 91 "similar to GP|15809886|gb|AAL06871.1 AT5g20890/F22D1_60 {Arabidopsis thaliana}, partial (98%)" 21101778 100 "gb|BQ414091.1|BQ414091 GA__Ed0082E11r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0082E11r, mRNA sequence" At5g20890 78 "chaperonin, putative [ F22D1.60 NP_197589.1 15242093 CDS reverse ] [MPSS: callus 528 tpm, flower 570 tpm, leaves 148 tpm, root 780 tpm, silique 302 tpm (CFLRS)] " cottonUV_Contig25 "UV3E05+(1,232) UV3H07-(467,671) UV8B05-(150,673) " TC185765 43 "weakly similar to PIR|T06293|T06293 3-hydroxyisobutyryl-coenzyme A hydrolase homolog T9E8.100 - Arabidopsis thaliana, partial (35%)" 21096799 100 "gb|BQ409112.1|BQ409112 GA__Ed0016A03r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0016A03r, mRNA sequence" At4g13360 40 "3-hydroxyisobutyryl-coenzyme A hydrolase (CoA-thioester hydrolase) family [ T9E8.100 NP_193072.1 15235689 CDS forward ] [MPSS: callus 31 tpm, flower 30 tpm, leaves 4 tpm, root 36 tpm, silique 6 tpm (CFLRS)] " cottonUV_Contig22 "UV3B04+(1,534) UV5D06+(7,513) " TC181074 54 "homologue to GP|23617221|dbj|BAC20889. NADH-ubiquinone oxidoreductase 18 kDa subunit mitochondrial precursor-like protein~contains ESTs, partial (93%)" 11199540 100 "gb|BF268545.1|BF268545 GA__Eb0002B09f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0002B09f, mRNA sequence" At5g67590 45 "expressed protein [ K9I9.16 NP_201560.1 15240784 CDS forward ] [MPSS: callus 159 tpm, flower 55 tpm, leaves 96 tpm, root 69 tpm, silique 148 tpm (CFLRS)] " cottonUV_Contig21 "UV3B03+(1,517) UV4E05+(243,763) " TC170685 99 shaggy kinase homolog 5048949 100 "gb|AI730097.1|AI730097 BNLGHi6146 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (AC000132) Identical to A. thaliana AtK-1 (gb|X79279). [Arabidopsis thaliana], mRNA sequence" At1g57870 100 "shaggy-related protein kinase kappa, putative [ F12K22.12 NP_176096.1 15217795 CDS reverse ] [MPSS: callus 41 tpm, flower 50 tpm, leaves 23 tpm, root 30 tpm, silique 57 tpm (CFLRS)] " cottonUV_Contig20 "UV10E08-(407,631) UV3A09-(1,585) UV3B02-(306,619) UV9A03-(125,604) " TC173898 78 "similar to GP|6996560|emb|CAB75429.1 oligouridylate binding protein {Nicotiana plumbaginifolia}, partial (72%)" 5047716 100 "gb|AI728864.1|AI728864 BNLGHi11815 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to NUCLEOLYSIN TIAR (TIA-1 RELATED PROTEIN) gi|1592563 (U55861) RNA binding protein TIAR [Mus musculus], mRNA sequence" At1g17370 58 "oligouridylate binding protein (UBP1), putative [ F1L3.2 NP_564018.1 18394471 CDS reverse ] [MPSS: callus 198 tpm, flower 85 tpm, leaves 92 tpm, root 109 tpm, silique 58 tpm (CFLRS)] " cottonUV_Contig15 "UV2G01-(1,511) UV4E10-(44,512) UV6B11-(79,511) " TC180079 100 catalase-1 18487 100 emb|X56675.1|GHLCCSU2 G. hirsutum mRNA for cotton catalase subunit 2 At4g35090 88 "catalase 2 [ M4E13.140 NP_195235.1 15236264 CDS reverse ] [MPSS: callus 72 tpm, flower 953 tpm, leaves 1875 tpm, root 516 tpm, silique 398 tpm (CFLRS)] " cottonUV_Contig14 "UV2E09+(1,433) UV3D12+(1,480) UV3H09+(1,530) UV9C08+(1,502) " TC179898 74 translationally controlled tumor protein-like protein [Zea mays] 5044334 100 "gb|AI725551.1|AI725551 BNLGHi12076 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (AF091455) translationally controlled tumor protein [Hevea brasiliensis], mRNA sequence" At3g16640 62 "translationally controlled tumor protein -related [ MGL6.19 NP_188286.1 15228276 CDS reverse ] [MPSS: callus 6582 tpm, flower 1696 tpm, leaves 2159 tpm, root 2617 tpm, silique 538 tpm (CFLRS)] " cottonUV_Contig11 "UV2D10+(1,354) UV2F08-(19,354) " TC171516 37 hexokinase [Zea mays] 21101522 34 "gb|BQ413835.1|BQ413835 GA__Ed0079D03r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0079D03r, mRNA sequence" At4g29130 48 "hexokinase [ F19B15.160 NP_194642.1 15233457 CDS reverse ] [MPSS: callus 69 tpm, flower 193 tpm, leaves 56 tpm, root 63 tpm, silique 78 tpm (CFLRS)] " cottonUV_Contig10 "UV2D09-(1,351) UV2E07-(5,353) UV6B06-(55,376) " TC171895 34 "SP|Q41898|ATP5_MAIZE ATP synthase epsilon chain mitochondrial (EC 3.6.3.14). [Maize] {Zea mays}, partial (98%)" 5046683 100 "gb|AI727831.1|AI727831 BNLGHi9201 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to ATP SYNTHASE EPSILON CHAIN, MITOCHONDRIAL gi|1655486|gnl|PID|d1014298 (D88377) epsilon subunit of mitochondrial F1-ATPase [Arabidopsis thaliana], mRNA sequence" At1g51650 31 "epsilon subunit of mitochondrial F1-ATPase [ F19C24.25 NP_175576.1 15217996 CDS forward ] [MPSS: callus 405 tpm, flower 152 tpm, leaves 242 tpm, root 1017 tpm, silique 486 tpm (CFLRS)] " cottonUV_Contig9 "UV10F12-(419,552) UV2D07+(1,375) UV4F10-(126,551) UV9C03+(3,463) " CB329438 34 5047808 100 "gb|AI728956.1|AI728956 BNLGHi12115 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (AC002342) unknown protein [Arabidopsis thaliana], mRNA sequence" At4g19950 68 "expressed protein [ F18F4.50 NP_193728.2 30684945 CDS forward ] [MPSS: callus 2 tpm, flower 7 tpm, leaves 21 tpm, root 26 tpm, silique 3 tpm (CFLRS)] " cottonUV_Contig3 "UV10A10-(492,923) UV10B05+(609,1006) UV10D06+(609,933)" TC181998 44 "similar to GP|6907085|dbj|BAA90612.1 ESTs AU082316(E3368) D41461(S3973) correspond to a region of the predicted gene.~hypothetical, partial (67%)" 21102544 100 "gb|BQ414857.1|BQ414857 GA__Ed0091H09r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0091H09r, mRNA sequence" At5g62390 59 "calmodulin-binding protein family [ MMI9.22 NP_201045.1 15241803 CDS reverse ] [MPSS: callus 607 tpm, flower 292 tpm, leaves 142 tpm, root 340 tpm, silique 132 tpm (CFLRS)] " cottonUV_Contig1 "UV2A01+(1,147) UV4H09+(1,399) UV7D03+(1,337) UV9F10+(1,396) " TC180801 52 "homologue to GP|1491774|emb|CAA68192.1 cysteine protease {Zea mays}, partial (25%)" 31406834 100 "gb|CD485869.1|CD485869 CFUS4.1C01 Cotton Root and Hypocotyl tissues infected with Fusarium oxysporum f.sp. vasinfectum (Fov) Lambda ZIPLOX Library (CFUS) Gossypium hirsutum cDNA clone CFUS4.1C01 5' similar to NTCP23-like cysteine proteinase, mRNA sequence" At5g60360 42 "cysteine proteinase AALP [ K9B18.8 NP_568921.1 18424347 CDS forward ] [MPSS: callus 549 tpm, flower 669 tpm, leaves 719 tpm, root 320 tpm, silique 477 tpm (CFLRS)] " cottonTMinusU_T10H11 TC181479 37 lumenal binding protein cBiPe2; polypeptide chain-binding protein 5045310 100 "gb|AI726458.1|AI726458 BNLGHi5901 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG, mRNA sequence" At5g28540 31 "luminal binding protein 1 precursor (BiP-1) (AtBP1) [ T26D3.10 NP_198206.1 15241844 CDS reverse ] [MPSS: callus 694 tpm, flower 607 tpm, leaves 214 tpm, root 602 tpm, silique 536 tpm (CFLRS)] " cottonTMinusU_T10G12 TC171323 45 "similar to SP|Q9MBD8|BI1_ORYSA Bax inhibitor-1 (BI-1) (OsBI-1). [Rice] {Oryza sativa}, partial (97%)" 5045703 89 "gb|AI726851.1|AI726851 BNLGHi6719 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (Z97343) unnamed protein product [Arabidopsis thaliana], mRNA sequence" At5g47120 42 "Bax inhibitor-1 (BI-1), putative [ K14A3.7 NP_199523.1 15238017 CDS forward ] [MPSS: callus 512 tpm, flower 212 tpm, leaves 88 tpm, root 582 tpm, silique 132 tpm (CFLRS)] " cottonTMinusU_T10B06 TC169769 51 "homologue to GP|23307584|dbj|BAC16718. putative NADH dehydrogenase {Oryza sativa (japonica cultivar-group)}, partial (33%)" 21101966 100 "gb|BQ414279.1|BQ414279 GA__Ed0084G07r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0084G07r, mRNA sequence" At5g08530 44 "NADH-ubiquinone oxidoreductase (mitochondrial), putative [ MAH20.9 NP_196470.1 15242306 CDS reverse ] [MPSS: callus 278 tpm, flower 221 tpm, leaves 175 tpm, root 162 tpm, silique 159 tpm (CFLRS)] " cottonTMinusU_T-9E12 TC168672 39 aldolase; fructose bisphosphate aldolase 13243732 100 "gb|BE052112.2|BE052112 GA__Ea0001K11f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0001K11f, mRNA sequence" At3g52930 35 "fructose-bisphosphate aldolase, putative [ F8J2.100 NP_190861.1 15231715 CDS reverse ] [MPSS: callus 1111 tpm, flower 1302 tpm, leaves 319 tpm, root 294 tpm, silique 256 tpm (CFLRS)] " cottonTMinusU_T-9B05 TC171369 43 "similar to GP|21537091|gb|AAM61432.1 unknown {Arabidopsis thaliana}, partial (54%)" 21091657 100 "gb|BQ403970.1|BQ403970 GA__Ed0064D08f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0064D08f, mRNA sequence" At1g73060 36 "expressed protein [ F3N23.26 NP_565054.1 18410256 CDS forward ] [MPSS: callus 17 tpm, flower 39 tpm, leaves 120 tpm, root 2 tpm, silique 42 tpm (CFLRS)] " cottonTMinusU_T8H01 TC179856 44 "similar to GP|14423396|gb|AAK62380.1 Unknown protein {Arabidopsis thaliana}, partial (56%)" 5047139 100 "gb|AI728287.1|AI728287 BNLGHi10339 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (U23517) similar to ubiquitin conjugating enzyme [Caenorhabditis elegans], mRNA sequence" At3g17000 38 "ubiquitin-conjugating enzyme, putative [ K14A17.7 NP_566563.1 18401338 CDS forward ] [MPSS: callus 148 tpm, flower 68 tpm, leaves 58 tpm, root 47 tpm, silique 151 tpm (CFLRS)] " cottonTMinusU_T8B01 TC185850 42 "weakly similar to GP|19310542|gb|AAL85004.1 unknown protein {Arabidopsis thaliana}, partial (73%)" 31406490 100 "gb|CD485525.1|CD485525 CFUS1.1C02 Cotton Root and Hypocotyl tissues infected with Fusarium oxysporum f.sp. vasinfectum (Fov) Lambda ZIPLOX Library (CFUS) Gossypium hirsutum cDNA clone CFUS1.1C02 5' similar to unknown protein, mRNA sequence" At3g09980 48 "expressed protein [ T22K18.21 NP_187609.2 22330944 CDS forward ] [MPSS: callus 218 tpm, flower 209 tpm, leaves 137 tpm, root 165 tpm, silique 196 tpm (CFLRS)] " cottonTMinusU_T7G03 TC183233 47 "similar to GP|15529270|gb|AAK97729.1 At1g29250/F28N24_8 {Arabidopsis thaliana}, partial (85%)" 21091517 84 "gb|BQ403830.1|BQ403830 GA__Ed0062H05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0062H05f, mRNA sequence" At1g29250 44 "expressed protein [ F28N24.7 NP_564325.1 18397011 CDS reverse ] [MPSS: callus 32 tpm, flower 16 tpm, leaves 18 tpm, root 150 tpm, silique 17 tpm (CFLRS)] " cottonTMinusU_T7F06 TC183306 33 "ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor [Zea mays]" 31406539 100 "gb|CD485574.1|CD485574 CFUS1.2H10 Cotton Root and Hypocotyl tissues infected with Fusarium oxysporum f.sp. vasinfectum (Fov) Lambda ZIPLOX Library (CFUS) Gossypium hirsutum cDNA clone CFUS1.2H10 5' similar to ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2, mRNA sequence" At2g39730 47 "auxin-regulated protein [ T5I7.18 NP_850321.1 30687999 CDS reverse ] [MPSS: callus 4 tpm, flower 2899 tpm, leaves 7647 tpm, root 9 tpm, silique 7531 tpm (CFLRS)] " cottonTMinusU_T6H02 TC180497 44 "similar to PIR|T06979|T06979 polyadenylate-binding protein - wheat, partial (36%)" 11201291 100 "gb|BF270296.1|BF270296 GA__Eb0008A13f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0008A13f, mRNA sequence" At1g49760 35 "polyadenylate-binding protein (PABP), putative [ F14J22.3 NP_564554.1 18402769 CDS forward ] [MPSS: callus 125 tpm, flower 280 tpm, leaves 156 tpm, root 266 tpm, silique 118 tpm (CFLRS)] " cottonTMinusU_T6G02 TC181251 69 "similar to GP|5803272|dbj|BAA83582.1 ESTs AU055950(S20175) C73125(E2952) AU055951(S20175) correspond to a region of the predicted gene.~, partial (64%)" 4104241 100 "gb|AF034266.1|AF034266 Gossypium hirsutum palmitoyl-acyl carrier protein thioesterase (FatB1) mRNA, partial cds" At1g08510 66 "acyl-(acyl carrier protein) thioesterase -related [ T27G7.19 NP_172327.1 15223236 CDS reverse ] [MPSS: callus 221 tpm, flower 296 tpm, leaves 185 tpm, root 21 tpm, silique 114 tpm (CFLRS)] " cottonTMinusU_T5E12 TC185163 43 "similar to GP|19698937|gb|AAL91204.1 4-alpha-glucanotransferase {Arabidopsis thaliana}, partial (27%)" 21098675 100 "gb|BQ410988.1|BQ410988 GA__Ed0036A01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0036A01f, mRNA sequence" At2g40840 37 "glycosyl hydrolase family 77 (4-alpha-glucanotransferase) [ T20B5.4 NP_181616.2 30688432 CDS forward ] [MPSS: callus 70 tpm, flower 211 tpm, leaves 81 tpm, root 55 tpm, silique 125 tpm (CFLRS)] " cottonTMinusU_T5C09 TC180240 80 plasma membrane integral protein ZmPIP2-1 [Zea mays]; aquaporin [Zea mays] 31406896 100 "gb|CD485931.1|CD485931 CFUS4.4G11 Cotton Root and Hypocotyl tissues infected with Fusarium oxysporum f.sp. vasinfectum (Fov) Lambda ZIPLOX Library (CFUS) Gossypium hirsutum cDNA clone CFUS4.4G11 5' similar to plasma membrane intrinsic protein SIMIP, mRNA sequence" At4g35100 83 "aquaporin, putative [ M4E13.150 NP_195236.1 15236267 CDS forward ] [MPSS: callus 808 tpm, flower 4413 tpm, leaves 1516 tpm, root 1041 tpm, silique 2061 tpm (CFLRS)] " cottonTMinusU_T4H03 TC188969 42 "similar to GP|21740558|emb|CAD40929. OSJNBa0033G16.8 {Oryza sativa}, partial (24%)" 3326215 64 "gb|AI055101.1|AI055101 coau0003A17 Cotton Boll Abscission Zone cDNA Library Gossypium hirsutum cDNA clone coau0003A17 5', mRNA sequence" At3g11670 36 "digalactosyldiacylglycerol synthase 1 (MGDG:MGDG galactosyltransferase) (galactolipid galactosyltransferase) (DGD1) [ T19F11.7 NP_850561.1 30681840 CDS reverse ] [MPSS: callus 36 tpm, flower 151 tpm, leaves 82 tpm, root 23 tpm, silique 126 tpm (CFLRS)] " cottonTMinusU_T4C07 TC170125 59 "homologue to PIR|T46169|T46169 CDC48-like protein - Arabidopsis thaliana, partial (89%)" 11203454 75 "gb|BF272459.1|BF272459 GA__Eb0014P17f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014P17f, mRNA sequence" At3g09840 48 "transitional endoplasmic reticulum ATPase -related [ F8A24.11 NP_187595.1 15232776 CDS forward ] [MPSS: callus 1497 tpm, flower 1237 tpm, leaves 630 tpm, root 1046 tpm, silique 784 tpm (CFLRS)] " cottonTMinusU_T4B10 TC180261 34 "homologue to SP|P49027|GBLP_ORYSA Guanine nucleotide-binding protein beta subunit-like protein (GPB-LR) (RWD). [Rice] {Oryza sativa}, partial (96%)" 11202073 100 "gb|BF271078.1|BF271078 GA__Eb0010H12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0010H12f, mRNA sequence" At1g48630 34 "WD-40 repeat auxin-dependent protein ARCA, putative [ F11I4.18 NP_175296.1 15221916 CDS reverse ] [MPSS: callus 186 tpm, flower 285 tpm, leaves 89 tpm, root 394 tpm, silique 158 tpm (CFLRS)] " cottonTMinusU_T4A07 TC185958 53 "similar to GP|9758905|dbj|BAB09481.1 contains similarity to transcription regulator~gene_id:MRG7.19 {Arabidopsis thaliana}, partial (19%)" 21101371 100 "gb|BQ413684.1|BQ413684 GA__Ed0077F04r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0077F04r, mRNA sequence" At5g18230 49 "expressed protein [ MRG7.19 NP_568361.1 18418549 CDS reverse ] [MPSS: callus 266 tpm, flower 212 tpm, leaves 82 tpm, root 77 tpm, silique 186 tpm (CFLRS)] " cottonTMinusU_T3D03 TC169349 67 "similar to PIR|H86249|H86249 hypothetical protein [imported] - Arabidopsis thaliana, partial (69%)" 21093468 100 "gb|BQ405781.1|BQ405781 GA__Ed0086G07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0086G07f, mRNA sequence" At1g11650 56 "RNA binding protein 45 (RBP45), putative [ F25C20.21 NP_849641.1 30682335 CDS forward ] [MPSS: callus 221 tpm, flower 112 tpm, leaves 191 tpm, root 107 tpm, silique 65 tpm (CFLRS)] " cottonTMinusU_T2F11 TC179992 51 "homologue to SP|P27523|CB23_HORVU Chlorophyll A-B binding protein of LHCII type III chloroplast precursor (CAB). [Barley], partial (94%)" 289921 80 "gb|L07120.1|COTIIABINB Gossypium hirsutum chloroplast photosystem II chlorophyll A/B-binding protein gene, exons 1-3" At5g54270 42 "light-harvesting chlorophyll a/b binding protein, putative [ MDK4.9 NP_200238.1 15239602 CDS forward ] [MPSS: callus 23 tpm, flower 40 tpm, leaves 520 tpm, root 34 tpm, silique 304 tpm (CFLRS)] " cottonTMinusU_T2B09 TC171046 33 "similar to GP|18057147|gb|AAL58170.1 unknown protein {Oryza sativa (japonica cultivar-group)}, partial (80%)" 13350150 100 "gb|BG440499.1|BG440499 GA__Ea0008H13f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0008H13f, mRNA sequence" At4g26670 44 "expressed protein [ T15N24.8 NP_567754.1 18416798 CDS forward ] [MPSS: callus 17 tpm, flower 14 tpm, leaves 42 tpm, root 48 tpm, silique 1 tpm (CFLRS)] " cottonTMinusU_T1G12 BE638608 52 5046423 100 "gb|AI727571.1|AI727571 BNLGHi8457 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to 60S RIBOSOMAL PROTEIN L3 gi|481228|pir|S38359 ribosomal protein L3 - rice gi|303853|gnl|PID|d1002645 (D12630) ribosomal protein L3 [Oryza sativa], mRNA sequence" At1g61580 42 "60S ribosomal protein L3 (RPL3B) [ T25B24.7 NP_176352.1 15220533 CDS reverse ] [MPSS: callus 61 tpm, flower 15 tpm, leaves 6 tpm, root 21 tpm, silique 45 tpm (CFLRS)] " cottonTMinusU_T1F08 TC181766 47 "similar to PIR|B84545|B84545 hypothetical protein At2g16860 [imported] - Arabidopsis thaliana, partial (72%)" 21095621 90 "gb|BQ407934.1|BQ407934 GA__Ed0004C10r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0004C10r, mRNA sequence" At2g16860 45 "expressed protein [ T24I21.30 NP_565396.1 18398236 CDS reverse ] [MPSS: callus 107 tpm, flower 92 tpm, leaves 55 tpm, root 49 tpm, silique 40 tpm (CFLRS)] " cottonTMinusU_T1D05 TC180267 81 "homologue to GP|22204120|gb|AAM92708.1 putative ribosomal protein S18 {Triticum aestivum}, complete" 5044324 100 "gb|AI725541.1|AI725541 BNLGHi12063 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to 40S RIBOSOMAL PROTEIN S18, mRNA sequence" At4g09800 70 "40S ribosomal protein S18 (RPS18C) [ F17A8.150 NP_192718.1 15234790 CDS forward ] [MPSS: callus 759 tpm, flower 885 tpm, leaves 548 tpm, root 1463 tpm, silique 542 tpm (CFLRS)] " cottonTMinusU_Contig151 "T10C04+(1,470) T3D02+(22,447) " TC182366 63 "similar to GP|15010572|gb|AAK73945.1 At1g12310/F5O11_2 {Arabidopsis thaliana}, complete" 11203159 100 "gb|BF272164.1|BF272164 GA__Eb0014B18f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014B18f, mRNA sequence" At1g12310 55 "calmodulin, putative [ F5O11.35 NP_172695.1 15221284 CDS reverse ] [MPSS: callus 338 tpm, flower 297 tpm, leaves 206 tpm, root 401 tpm, silique 420 tpm (CFLRS)] " cottonTMinusU_Contig145 "T-9A03+(1,495) T3D12+(12,365) " TC179898 70 translationally controlled tumor protein-like protein [Zea mays] 31073056 100 "gb|CA993335.1|CA993335 pAR0702 pAR Gossypium hirsutum cDNA 5', mRNA sequence" At3g16640 60 "translationally controlled tumor protein -related [ MGL6.19 NP_188286.1 15228276 CDS reverse ] [MPSS: callus 6582 tpm, flower 1696 tpm, leaves 2159 tpm, root 2617 tpm, silique 538 tpm (CFLRS)] " cottonTMinusU_Contig141 "T10D06-(1,250) T7E02+(1,250) T8E07+(1,250) " AI920372 45 5046992 100 "gb|AI728140.1|AI728140 BNLGHi9502 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to (AL022223) putative protein [Arabidopsis thaliana], mRNA sequence" At5g56280 38 "COP9 complex subunit 6 CSN6, putative [ K24C1.10 NP_568839.1 18423847 CDS reverse ] [MPSS: callus 165 tpm, flower 19 tpm, leaves 28 tpm, root 70 tpm, silique 23 tpm (CFLRS)] " cottonTMinusU_Contig140 "T10H02+(252,441) T2H09+(252,425) T6C01+(252,425) T6H03+(252,425) T8E01+(1,441) " TC168707 79 "homologue to GP|16226776|gb|AAL16259.1 AT3g23810/MYM9_15 {Arabidopsis thaliana}, partial (63%)" 13247102 100 "gb|BF268594.2|BF268594 GA__Eb0002E06f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0002E06f, mRNA sequence" At4g13940 66 "adenosylhomocysteinase [ FCAALL.35 NP_193130.1 15236376 CDS forward ] [MPSS: callus 3524 tpm, flower 2947 tpm, leaves 1704 tpm, root 4945 tpm, silique 2331 tpm (CFLRS)] " cottonTMinusU_Contig138 "T10C05+(146,521) T10E07-(175,528) T10E10-(74,528) T1D02+(19,162) T2C04+(151,352) T6C12-(19,159) T7G06+(1,162) T8A08-(74,465) T8C06-(115,508) T8E04+(146,527) " TC179830 48 "homologue to SP|P21569|CYPH_MAIZE Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin), complete" 31073502 100 "gb|CA993781.1|CA993781 pAR10E05 pAR Gossypium hirsutum cDNA 5', mRNA sequence" At4g38740 43 "peptidylprolyl isomerase ROC1 [ T9A14.20 NP_195585.1 15234781 CDS reverse ] [MPSS: callus 2511 tpm, flower 979 tpm, leaves 774 tpm, root 1587 tpm, silique 495 tpm (CFLRS)] " cottonTMinusU_Contig134 "T10C07-(109,525) T10F12+(5,481) T10G07+(30,413) T5B02+(5,508) T5H01+(6,526) T7C08+(1,469) " TC169700 39 ferredoxin; Fd III 5047222 100 "gb|AI728370.1|AI728370 BNLGHi10603 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to ferredoxin precursor - sweet orange gi|1360725|gnl|PID|e130000 (Z46944) non-photosynthetic ferredoxin [Citrus sinensis], mRNA sequence" At2g27510 41 "ferredoxin, putative [ F10A12.19 NP_180320.1 15225888 CDS reverse ] [MPSS: callus 8 tpm, flower 2 tpm, leaves 1 tpm, root 31 tpm, silique 2 tpm (CFLRS)] " cottonTMinusU_Contig130 "T6H06-(1,340) T7C02-(1,340) " TC181971 43 "weakly similar to PIR|A84861|A84861 probable amine oxidase [imported] - Arabidopsis thaliana, partial (89%)" 3326244 81 "gb|AI055130.1|AI055130 coau0003C02 Cotton Boll Abscission Zone cDNA Library Gossypium hirsutum cDNA clone coau0003C02 5', mRNA sequence" At2g43020 47 "amine oxidase family [ MFL8.12 NP_181830.1 15224204 CDS forward ] [MPSS: callus 6 tpm, flower 39 tpm, leaves 12 tpm, root 21 tpm, silique 109 tpm (CFLRS)] " cottonTMinusU_Contig129 "T1G10-(27,398) T2D12-(45,397) T3G03+(15,410) T4F10+(6,345) T5B09-(15,410) T6E06+(15,389) T6G05-(1,398) T7C06-(1,397) T8B08-(6,420) T8H02-(40,399) " TC175956 57 "similar to PIR|T03718|T03718 suppressor 2 protein homolog - common tobacco (fragment), partial (57%)" 21093871 100 "gb|BQ406184.1|BQ406184 GA__Ed0091G01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0091G01f, mRNA sequence" At1g18070 57 "EF-1-alpha-related GTP-binding protein, putative [ T10O22.4 NP_173247.1 15220940 CDS reverse ] [MPSS: callus 180 tpm, flower 224 tpm, leaves 111 tpm, root 110 tpm, silique 108 tpm (CFLRS)] " cottonTMinusU_Contig123 "T10D01+(1,308) T6D12+(1,210) " TC190363 37 "homologue to PIR|S71455|S71455 catalase (EC 1.11.1.6) 2 - maize, partial (46%)" 18487 100 emb|X56675.1|GHLCCSU2 G. hirsutum mRNA for cotton catalase subunit 2 At4g35090 35 "catalase 2 [ M4E13.140 NP_195235.1 15236264 CDS reverse ] [MPSS: callus 72 tpm, flower 953 tpm, leaves 1875 tpm, root 516 tpm, silique 398 tpm (CFLRS)] " cottonTMinusU_Contig100 "T10D11-(8,493) T2C11+(207,402) T3E09+(207,489) T5A10+(1,527) T6H11+(207,463) " TC180264 56 "similar to GP|7416846|dbj|BAA94084.1 NAD-dependent sorbitol dehydrogenase {Prunus persica}, partial (94%)" 18099969 40 "gb|BM359223.1|BM359223 GA__Ea0018A03r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0018A03r, mRNA sequence" At5g51970 48 "L-iditol 2-dehydrogenase (sorbitol dehydrogenase), putative [ MSG15.7 NP_200010.1 15242240 CDS forward ] [MPSS: callus 39 tpm, flower 91 tpm, leaves 30 tpm, root 40 tpm, silique 70 tpm (CFLRS)] " cottonTMinusU_Contig75 "T-9D12-(51,505) T1C04-(100,505) T1E06-(134,602) T3A08-(162,514) T4A10-(1,510) T4C04-(245,504) T6D10-(51,507) T6G03-(98,507) T6H08-(298,605) T7B05-(124,604) " TC181843 50 "similar to GP|11762164|gb|AAG40360.1 AT4g22310 {Arabidopsis thaliana}, partial (89%)" 21099182 79 "gb|BQ411495.1|BQ411495 GA__Ed0040C02f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0040C02f, mRNA sequence" At4g22310 43 "expressed protein [ T10I14.140 NP_193962.1 15235603 CDS forward ] [MPSS: callus 242 tpm, flower 73 tpm, leaves 164 tpm, root 548 tpm, silique 219 tpm (CFLRS)] " cottonTMinusU_Contig73 "T-9C08-(1,405) T-9D03-(1,405) T4A03+(44,307) T4A04+(1,200) " TC184034 42 "homologue to GP|18921322|gb|AAL82527.1 putative ribonucleoprotein {Oryza sativa}, partial (72%)" 13352958 100 "gb|BG443306.1|BG443306 GA__Ea0020D23f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0020D23f, mRNA sequence" At2g37220 39 "29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative [ T2N18.1 NP_181259.1 15228102 CDS reverse ] [MPSS: callus 3 tpm, flower 28 tpm, leaves 58 tpm, root 1 tpm, silique 115 tpm (CFLRS)] " cottonTMinusU_Contig67 "T1E09-(49,436) T3F07+(1,506) T3F12+(77,333) " TC183369 73 "similar to PIR|A85356|A85356 nucleotide sugar epimerase-like protein [imported] - Arabidopsis thaliana, partial (78%)" 11203173 100 "gb|BF272178.1|BF272178 GA__Eb0014C10f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014C10f, mRNA sequence" At3g23820 71 "NAD-dependent epimerase/dehydratase family [ F14O13.9 NP_189024.1 15229524 CDS forward ] [MPSS: callus 43 tpm, flower 247 tpm, leaves 225 tpm, root 262 tpm, silique 277 tpm (CFLRS)] " cottonTMinusU_Contig64 "T3E02-(1,446) T6G04-(276,446) " TC168857 56 heat shock protein 70 kDa 13245986 100 "gb|BE051965.2|BE051965 GA__Ea0032H12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0032H12f, mRNA sequence" At5g02500 50 "heat shock protein hsc70-1 (hsp70-1) (hsc70.1) [ T22P11.90 NP_195870.1 15241849 CDS reverse ] [MPSS: callus 5001 tpm, flower 4064 tpm, leaves 3171 tpm, root 7691 tpm, silique 2022 tpm (CFLRS)] " cottonTMinusU_Contig61 "T3D04+(1,344) T4G02+(1,398) T4H08-(50,399) T7C01+(1,399) T7C11-(1,399) " TC180801 54 "homologue to GP|1491774|emb|CAA68192.1 cysteine protease {Zea mays}, partial (25%)" 31406834 100 "gb|CD485869.1|CD485869 CFUS4.1C01 Cotton Root and Hypocotyl tissues infected with Fusarium oxysporum f.sp. vasinfectum (Fov) Lambda ZIPLOX Library (CFUS) Gossypium hirsutum cDNA clone CFUS4.1C01 5' similar to NTCP23-like cysteine proteinase, mRNA sequence" At5g60360 44 "cysteine proteinase AALP [ K9B18.8 NP_568921.1 18424347 CDS forward ] [MPSS: callus 549 tpm, flower 669 tpm, leaves 719 tpm, root 320 tpm, silique 477 tpm (CFLRS)] " cottonTMinusU_Contig60 "T-9E11-(61,165) T3C11-(1,420) T5F06-(44,420) T5G07-(44,420) " TC171895 34 "SP|Q41898|ATP5_MAIZE ATP synthase epsilon chain mitochondrial (EC 3.6.3.14). [Maize] {Zea mays}, partial (98%)" 13245061 100 "gb|BE052162.2|BE052162 GA__Ea0016L01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0016L01f, mRNA sequence" At1g51650 32 "epsilon subunit of mitochondrial F1-ATPase [ F19C24.25 NP_175576.1 15217996 CDS forward ] [MPSS: callus 405 tpm, flower 152 tpm, leaves 242 tpm, root 1017 tpm, silique 486 tpm (CFLRS)] " cottonTMinusU_Contig59 "T3C04-(1,389) T4D03+(87,389) T7A05-(106,389) " TC168983 79 "homologue to GP|2668744|gb|AAB88617.1| ubiquitin conjugating enzyme {Zea mays}, complete" 5045420 100 "gb|AI726568.1|AI726568 BNLGHi6172 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to UBIQUITIN-CONJUGATING ENZYME E2-17 KD 9, mRNA sequence" At4g27960 67 "ubiquitin-conjugating enzyme 9 (UBC9) [ T13J8.70 NP_849462.1 30687803 CDS reverse ] [MPSS: callus 265 tpm, flower 139 tpm, leaves 164 tpm, root 331 tpm, silique 349 tpm (CFLRS)] " cottonTMinusU_Contig51 "T-9F01+(1,454) T2G12+(1,330) " TC182384 33 glutathione S-transferase GST 10 13246674 100 "gb|BE053268.2|BE053268 GA__Ea0035A09f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0035A09f, mRNA sequence" At2g30860 50 "glutathione transferase, putative [ F7F1.7 NP_180643.1 15224581 CDS forward ] [MPSS: callus 368 tpm, flower 90 tpm, leaves 410 tpm, root 740 tpm, silique 49 tpm (CFLRS)] " cottonTMinusU_Contig50 "T-9F12-(149,551) T2G10+(1,576) T7F09-(116,551) " TC169909 60 "homologue to SP|Q9LST7|PSB3_ORYSA Proteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha subunit C), complete" 13246823 100 "gb|BE055178.2|BE055178 GA__Ea0035H19f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0035H19f, mRNA sequence" At1g21720 51 "20S proteasome beta subunit C (PBC1) [ F8K7.15 NP_564149.1 18395025 CDS forward ] [MPSS: callus 259 tpm, flower 101 tpm, leaves 102 tpm, root 289 tpm, silique 278 tpm (CFLRS)] " cottonTMinusU_Contig47 "T2G04+(1,473) T4F06+(18,442) " TC182468 47 plasma membrane integral protein ZmPIP2-4 [Zea mays] 31407371 82 "gb|CD486406.1|CD486406 CRH1.3E11 Cotton Root and Hypocotyl Lambda ZIPLOX Library (CRH) Gossypium hirsutum cDNA clone CRH1.3E11 5' similar to plasma intrinsic protein 2,1, mRNA sequence" At3g53420 33 "plasma membrane intrinsic protein 2A [ F4P12.120 NP_190910.1 15231810 CDS reverse ] [MPSS: callus 3 tpm, flower 554 tpm, leaves 1087 tpm, root 1566 tpm, silique 2079 tpm (CFLRS)] " cottonTMinusU_Contig42 "T-9D05-(24,376) T1B03-(24,376) T1B11-(24,376) T2F02-(1,375) T3D10+(24,376) T3G04-(24,376) T6A06-(24,376) T6B04+(24,376) T7B07+(24,376) T8C10-(24,376) " TC171449 51 "homologue to GP|10140633|gb|AAG13469.1 unknown protein {Oryza sativa (japonica cultivar-group)}, partial (98%)" 6462194 100 "gb|AW187773.1|AW187773 BNLGHi10272 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence" At5g47570 45 "expressed protein [ MNJ7.16 NP_568684.1 18422811 CDS reverse ] [MPSS: callus 158 tpm, flower 141 tpm, leaves 101 tpm, root 304 tpm, silique 217 tpm (CFLRS)] " cottonTMinusU_Contig38 "T-9G01-(295,725) T10E11-(274,724) T1C02-(399,792) T1D06-(341,726) T2D08+(1,288) T3C10+(44,598) T4D10-(481,729) T4G12-(266,727) T5D01+(43,548) T5D09-(266,790) T6B07-(356,795) T6F01-(197,722) T6F05-(294,725) T7E10-(300,757) T8B07+(43,583) T8D12+(43,548) T8F05-(395,796) " TC169553 88 Calmodulin 11199784 100 "gb|BF268801.1|BF268801 GA__Eb0002P01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0002P01f, mRNA sequence" At3g43810 72 "calmodulin [ T28A8.100 NP_189967.1 15229784 CDS reverse ] [MPSS: callus 168 tpm, flower 206 tpm, leaves 167 tpm, root 926 tpm, silique 371 tpm (CFLRS)] " cottonTMinusU_Contig31 "T1D04+(1,418) T2B01+(1,346) T3A07+(1,370) T7B06-(20,473) " TC181756 52 "similar to GP|15292951|gb|AAK93586.1 unknown protein {Arabidopsis thaliana}, partial (85%)" 21100165 100 "gb|BQ412478.1|BQ412478 GA__Ed0058E05r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0058E05r, mRNA sequence" At5g42890 54 "expressed protein [ MBD2.8 NP_199103.1 15239102 CDS reverse ] [MPSS: callus 143 tpm, flower 137 tpm, leaves 56 tpm, root 189 tpm, silique 115 tpm (CFLRS)] " cottonTMinusU_Contig26 "T-9H04+(1,544) T2A01+(1,398) T8E08+(1,397) " TC169047 85 cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC3; glyceraldehyde-3-phosphate dehydrogenase 13352929 100 "gb|BG443277.1|BG443277 GA__Ea0020C02f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0020C02f, mRNA sequence" At3g04120 72 "glyceraldehyde-3-phosphate dehydrogenase C subunit (GapC) [ T6K12.26 NP_187062.1 15229231 CDS forward ] [MPSS: callus 1419 tpm, flower 1702 tpm, leaves 544 tpm, root 2174 tpm, silique 1291 tpm (CFLRS)] " cottonTMinusU_Contig19 "T1G04+(1,569) T2F05-(293,703) " TC175209 45 "similar to GP|12324600|gb|AAG52261.1 unknown protein; 19658-19089 {Arabidopsis thaliana}, partial (74%)" 6481318 100 "gb|AW187189.2|AW187189 BNLGHi10939 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence" At1g79975 44 "expressed protein [ F18B13.6 NP_849909.1 30699474 CDS forward ] [MPSS: callus 9 tpm, flower 21 tpm, leaves 8 tpm, root 11 tpm, silique 11 tpm (CFLRS)] " cottonTMinusU_Contig18 "T10C12-(117,468) T10F06-(29,458) T1G03-(1,441) " TC169585 57 "homologue to PIR|T45902|T45902 inorganic pyrophosphatase-like protein - Arabidopsis thaliana, partial (91%)" 11203167 100 "gb|BF272172.1|BF272172 GA__Eb0014C04f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014C04f, mRNA sequence" At3g53620 46 "inorganic pyrophosphatase -related protein [ F4P12.320 NP_190930.1 15231849 CDS forward ] [MPSS: callus 394 tpm, flower 398 tpm, leaves 86 tpm, root 145 tpm, silique 93 tpm (CFLRS)] "