BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634929|ref|NP_038964.1| ORF FPV001 [Fowlpox virus] (205 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.135 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,849 Number of Sequences: 156 Number of extensions: 833 Number of successful extensions: 3 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 205 length of database: 48,119 effective HSP length: 58 effective length of query: 147 effective length of database: 39,071 effective search space: 5743437 effective search space used: 5743437 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634923|ref|NP_038965.1| ORF FPV002 hypothetical protein [Fowlpox virus] (222 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.335 0.144 0.556 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,838 Number of Sequences: 156 Number of extensions: 781 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 222 length of database: 48,119 effective HSP length: 59 effective length of query: 163 effective length of database: 38,915 effective search space: 6343145 effective search space used: 6343145 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634932|ref|NP_038966.1| ORF FPV003 C-type lectin gene family protein [Fowlpox virus] (123 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.138 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,295 Number of Sequences: 156 Number of extensions: 616 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 123 length of database: 48,119 effective HSP length: 53 effective length of query: 70 effective length of database: 39,851 effective search space: 2789570 effective search space used: 2789570 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634924|ref|NP_038967.1| ORF FPV004 hypothetical protein [Fowlpox virus] (101 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.330 0.140 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,774 Number of Sequences: 156 Number of extensions: 357 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 101 length of database: 48,119 effective HSP length: 51 effective length of query: 50 effective length of database: 40,163 effective search space: 2008150 effective search space used: 2008150 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634930|ref|NP_038968.1| ORF FPV005 EFc gene family protein [Fowlpox virus] (122 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,982 Number of Sequences: 156 Number of extensions: 401 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 122 length of database: 48,119 effective HSP length: 53 effective length of query: 69 effective length of database: 39,851 effective search space: 2749719 effective search space used: 2749719 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634925|ref|NP_038969.1| ORF FPV006 C4L/C10L-like gene family protein [Fowlpox virus] (418 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150446|ref|NP_150441.1| LSDV007 hypothetical protein [lumpy... 167 4e-044 >gi|15150446|ref|NP_150441.1| LSDV007 hypothetical protein [lumpy skin disease virus] Length = 355 Score = 167 bits (424), Expect = 4e-044 Identities = 114/358 (31%), Positives = 179/358 (49%), Gaps = 27/358 (7%) Query: 12 LAVHRFTETRFTSFKKELLVNLGISDLNDIKNIC-EDSKIFFPEKRTELLSIKDRKSKQI 70 + V F + F + KK ++ D+ KNI E+SK+F EK E+++ +R+ KQ Sbjct: 9 IKVKTFNDDYFNNVKKIIM------DMIKYKNIIWEESKVFDHEKGIEVINTNERQCKQY 62 Query: 71 VFENSLNDDLLKKLHA--LIYDELSTVVDSVTVENTVTLIMYEKGDYFARHRDFSTVFSK 128 + DD+ K + L+ E + + ++NT+TLI YEKGD+F HRDF SK Sbjct: 63 IIRGL--DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEKGDFFNTHRDFIHFKSK 120 Query: 129 NIICVHLLLYLEQPETGGETVIYIDNNTSVKLKTDHLFDKTIEHESITVESGRKCVALFD 188 N C HL+LYL GG T I+I NT K D LFDKT+ H S + G K +AL + Sbjct: 121 NCYCYHLVLYLNNTSKGGNTNIHIKPNTIFSTKNDVLFDKTLNHSSDIITDGEKNIALIN 180 Query: 189 VLLEKKLSASTNVIGSIEYLGKK--INLYDRENDLQLCYCDMVIERMTEDKEYSLGMISD 246 V++ K S + I + YL + IN Y+ E + + CYC + + + + + + G+I + Sbjct: 181 VVI-KYNSNNDETIFKLPYLSENNHINFYEDEGNRKFCYCLVTVNNYSTEVD-TFGLILN 238 Query: 247 RSGRCIKSHHNGSIVRYRKEEYGSFDALCI-----YNMNEVDEIWTGDKKHIIWSTIDKK 301 RSG+C+ + I+ K + +FD +C+ YN D + D K+I W ++ Sbjct: 239 RSGKCVLVNKYDDIIT-EKLIFENFDDMCMEISFSYNDIIFDYLKNEDGKNIAWKALNSS 297 Query: 302 TGTSFIPIDPVLYEKLKAISSKEHKEYKD------LRGFCNSRTEYICCSVSKYYFDL 353 + P ++ LK + + KD L G CNS YI +V + YF + Sbjct: 298 CDEIWYPKSKNDFDFLKDLVKYVNNNLKDKINYYVLTGNCNSEIHYINFNVVRCYFSI 355 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,818 Number of Sequences: 156 Number of extensions: 2938 Number of successful extensions: 19 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 1 length of query: 418 length of database: 48,119 effective HSP length: 64 effective length of query: 354 effective length of database: 38,135 effective search space: 13499790 effective search space used: 13499790 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634926|ref|NP_038970.1| ORF FPV007 hypothetical protein [Fowlpox virus] (72 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.325 0.138 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8775 Number of Sequences: 156 Number of extensions: 375 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 72 length of database: 48,119 effective HSP length: 48 effective length of query: 24 effective length of database: 40,631 effective search space: 975144 effective search space used: 975144 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634933|ref|NP_038971.1| ORF FPV008 C-type lectin gene family protein [Fowlpox virus] (167 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.327 0.142 0.471 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,098 Number of Sequences: 156 Number of extensions: 1328 Number of successful extensions: 12 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 167 length of database: 48,119 effective HSP length: 56 effective length of query: 111 effective length of database: 39,383 effective search space: 4371513 effective search space used: 4371513 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634927|ref|NP_038972.1| ORF FPV009 hypothetical protein [Fowlpox virus] (66 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.331 0.143 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8552 Number of Sequences: 156 Number of extensions: 386 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 66 length of database: 48,119 effective HSP length: 42 effective length of query: 24 effective length of database: 41,567 effective search space: 997608 effective search space used: 997608 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634680|ref|NP_038973.1| ORF FPV010 Serpin gene family protein [Fowlpox virus] (355 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150588|ref|NP_150583.1| LSDV149 serpin-like protein [lumpy ... 108 2e-026 >gi|15150588|ref|NP_150583.1| LSDV149 serpin-like protein [lumpy skin disease virus] Length = 337 Score = 108 bits (271), Expect = 2e-026 Identities = 91/354 (25%), Positives = 161/354 (44%), Gaps = 37/354 (10%) Query: 8 LKELYVPGKDICISPRGVYTILMNIMIGCKKETRDKIKDLLGIFGNYVPIPXXXXXXXXX 67 L + P ++ ISP + +IL ++ G +T +I +L Sbjct: 7 LSSIASPDSNVLISPVSISSILSILLFGSNGDTAIQISSVL------------------- 47 Query: 68 XXXXXXLINKSIMLIEEGY-PIKRDFINSSYDIFNAKV--VSFTDDT--ISETINKWVEL 122 + I++ Y +K D F ++ V+F +T I IN+W++ Sbjct: 48 ESTYSNCCSDDIIIANRIYGDLKLHLKTQFIDKFGKELILVNFNHNTELIKNDINEWIKR 107 Query: 123 STRGLIKDFSISLADDIRLAIINVLYFKSKWKYPFDTELTSKHPFKKYNGTDVMIDTMMI 182 T IK+ ++++ +L ++N +YFK KWK PFD + T F N I+ M+ Sbjct: 108 LTHDKIKNLIDEISENTKLLLLNAVYFKLKWKSPFDKQQTKIEKFWYDNSRYENIE--MM 165 Query: 183 QDVAFY-YKHDEDIRSQVVMLEYEDYRFVMFIIIPDSVTGIDGVVDSLXXXXXXXXXXXX 241 DV Y + +++ +++ L YE+ + M I++P + I+ Sbjct: 166 NDVNVYPFIELKELGLKIIELPYEN-NYSMIILLPKDIKKIE------KNLTGNNLTLWI 218 Query: 242 XDMTLKEIVLYLPKFELEDDVDLKDALIHMGCNDLFK-SGELVGISDTKTLRIGNIRQKS 300 M L E+ + +PKF++E+ DLK +LI +G D+F S + ++ K L + N K+ Sbjct: 219 DKMNLYEVNVKIPKFKIEETYDLKLSLISLGIIDIFDGSADFSNMTKNKNLSVDNFYHKT 278 Query: 301 VIKVDEYGTEAASVTESCTTD-GIKKIPIVKANVPFMFLVADVQTKIPLFLGIF 353 I++DE G E ++ + C D G + + AN PF+FL+ D LF+G F Sbjct: 279 YIEIDEEGAELSAASYCCVADCGCNEKEFI-ANKPFIFLIKDNINVSFLFIGKF 331 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.143 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,395 Number of Sequences: 156 Number of extensions: 1755 Number of successful extensions: 11 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 1 length of query: 355 length of database: 48,119 effective HSP length: 63 effective length of query: 292 effective length of database: 38,291 effective search space: 11180972 effective search space used: 11180972 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634681|ref|NP_038974.1| ORF FPV011 alpha-SNAP [Fowlpox virus] (278 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,758 Number of Sequences: 156 Number of extensions: 1441 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 278 length of database: 48,119 effective HSP length: 61 effective length of query: 217 effective length of database: 38,603 effective search space: 8376851 effective search space used: 8376851 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634682|ref|NP_038975.1| ORF FPV012 Ankyrin repeat gene family protein [Fowlpox virus] (331 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 53 1e-009 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 45 4e-007 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 53.1 bits (126), Expect = 1e-009 Identities = 82/384 (21%), Positives = 146/384 (37%), Gaps = 96/384 (25%) Query: 2 DTEMDGVNNDGYTSLYKETAKGNIKKVVELLY----KGVNPNTPNVDSYTPLHIAAKTGN 57 + +++ N+DG T LY + G IK E+L G + D YT L + KT + Sbjct: 95 NADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNH 154 Query: 58 ----IKIIRRLIRYGANVDKETN-DGYTAL----LIAICTGDIKTCNVLLDEG------- 101 I+II+ L+ G +++ +N + Y L I D + +D G Sbjct: 155 HIIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDNGFIIKKED 214 Query: 102 --------------------------------ANPNYVNKYGITPLVRIISYYRPTILKL 129 N N V++ G PL +S+ TI + Sbjct: 215 KSHKKKLMEYLNSLLYDNRRVKKNILDFIFTYINVNQVDELGFNPLYYSVSHNNRTIFEY 274 Query: 130 LMDRGANCNQIINIGQ---------------------------VTYTIMEYFINLFDEYK 162 ++ G N N I +G ++YT + +L D Sbjct: 275 IIQLGGNINCISELGDTLLFKAFENRSLFIFNSILEKKPNKKTISYTYYKLRKHLLDVG- 333 Query: 163 IPILNLVPYIIISKFKASITVNIEGF---NRNIAAIAKNSRLLEVALKCKSEIAFMTTRG 219 +N + + II KF A + + ++ F NR A I + + KC ++ Sbjct: 334 -DFINQIEFDIIKKFIAHVILYVKNFSVRNRTKAFIYFD----DFIEKCTKSSNYIHNTY 388 Query: 220 IGDKSLFEICILEDIKDIDHNSFVAFLDKLIESQSNLRIYGYTMNKIIEMGRYRKELLCS 279 I ++++F++C + I S ++ +KL++ + L YG + K IE + E + Sbjct: 389 INNETIFQLCFNKKYIPI---SVISNNEKLLKKHTKLFYYGNILKKNIEKSKKYYE---N 442 Query: 280 AVRVNSC--NLSSLNTEWCLLPLK 301 +V+ C NL + W +PL+ Sbjct: 443 IYKVSCCISNLCDTCSYWNTIPLE 466 Score = 51.6 bits (122), Expect = 3e-009 Identities = 79/296 (26%), Positives = 129/296 (42%), Gaps = 48/296 (16%) Query: 5 MDGVNNDGYTSLYKETAKGNIKK------VVELLYKG-VNPNTPNVDSYTPLHIAAKTGN 57 ++G+ N+ T L T NIKK VV++L + + N N D TPL+ G Sbjct: 60 VNGLENEYSTPLC--TILSNIKKYKHMLDVVKILIENNADVNKKNSDGETPLYCLLSNGY 117 Query: 58 IK----IIRRLIRYGANVDKETNDGYTALLIAICTG----DIKTCNVLLDEGANPNYV-N 108 IK I+ +I+ GA + DGYT L + + T DI+ +LL+ G + N + N Sbjct: 118 IKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIIDIEIIKILLESGIDINTISN 177 Query: 109 KYGITPLVRIISY----YRPTILKLLMDRGANCNQIINIGQVTY--TIMEYFINLFDEYK 162 K L Y ILKL +D G II ++ +MEY +L + + Sbjct: 178 KEKYDTLDCYFKYNIDRIDANILKLFVDNGF----IIKKEDKSHKKKLMEYLNSLLYDNR 233 Query: 163 IPILNLVPYIIISKFKASITVNIEGFNRNIAAIAKNSR-LLEVALKCKSEIAFMTTRGIG 221 N++ +I + V+ GFN +++ N+R + E ++ I ++ +G Sbjct: 234 RVKKNILDFIF--TYINVNQVDELGFNPLYYSVSHNNRTIFEYIIQLGGNINCISE--LG 289 Query: 222 DKSLFEICILEDIKDIDHNSFVAFLDKLIESQSNLRIYGYTMNKIIEMGRYRKELL 277 D LF K ++ S F + ++E + N + YT K+ RK LL Sbjct: 290 DTLLF--------KAFENRSLFIF-NSILEKKPNKKTISYTYYKL------RKHLL 330 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 44.7 bits (104), Expect = 4e-007 Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 30/172 (17%) Query: 8 VNNDGYT--SLYKETAKGNIKKVVELLYKG-VNPN-TPNVDSYTPLHIAAKTG---NIKI 60 V +DGY LY E+ V++LL K VN N + TPLHI G N + Sbjct: 144 VRSDGYNLLHLYLESCNNIKLSVLKLLIKNNVNVNGLTRFRNLTPLHIYLCKGYCLNYSV 203 Query: 61 IRRLIRYGANVDKETNDGYTALLIAICTGDIKTCN----------VLLDEGANPNYVNKY 110 I LI G+ E N G LL + T TC+ L+ +GA+ N ++ Sbjct: 204 INFLIDTGS----EINCGKETLLYSFFT----TCDNEKVFKSLTTKLIKKGADINQKSES 255 Query: 111 GITPLVRIISY---YRPTILKLLMDRGANCNQIINIGQVTYTIMEYFINLFD 159 G+TPL+ ++Y P +K ++ G NQ++ Q T++ ++ +D Sbjct: 256 GLTPLMGFVAYSDLATPNNIKFILSCGG--NQLVVNPQSNETLLHIYLRRYD 305 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,596 Number of Sequences: 156 Number of extensions: 2054 Number of successful extensions: 20 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 7 length of query: 331 length of database: 48,119 effective HSP length: 62 effective length of query: 269 effective length of database: 38,447 effective search space: 10342243 effective search space used: 10342243 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634683|ref|NP_038976.1| ORF FPV013 hypothetical protein [Fowlpox virus] (60 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.314 0.130 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7138 Number of Sequences: 156 Number of extensions: 263 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 60 length of database: 48,119 effective HSP length: 36 effective length of query: 24 effective length of database: 42,503 effective search space: 1020072 effective search space used: 1020072 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634684|ref|NP_038977.1| ORF FPV014 Ankyrin repeat gene family protein [Fowlpox virus] (437 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 52 3e-009 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 52.0 bits (123), Expect = 3e-009 Identities = 66/295 (22%), Positives = 116/295 (38%), Gaps = 45/295 (15%) Query: 14 DVIKALKGNDSDPNMVNEYGCSLLHCAVENG----NTEIARILLLEGANPDLYTESTPTA 69 DV+K L N++D N N G + L+C + NG N EI ++ GA L ++ T Sbjct: 86 DVVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTM 145 Query: 70 LHRAVILRHY----DIVNLLMEFNVDPDNYENHESRTPLEYAVKLN----DVKMTKTLLD 121 L V H+ +I+ +L+E +D + N E L+ K N D + K +D Sbjct: 146 LQVYVKTNHHIIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVD 205 Query: 122 YGADAEDIYRFNCPINDAAANGNL-EICKLLIDAGARINSRSMGSVYTIHHAIRSGNYEL 180 G F D + L E L+ R+ + ++T + Sbjct: 206 NG--------FIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTYINV-------- 249 Query: 181 VVELLSRGALPDVEDELSFSSLHHAVMEGSADMVLTLLEHGASVDVQDFCGRTPLFLAAN 240 + DEL F+ L+++V + + +++ G +++ G T LF A Sbjct: 250 -----------NQVDELGFNPLYYSVSHNNRTIFEYIIQLGGNINCISELGDTLLFKAFE 298 Query: 241 ASELDIVKVLLDFWADTSVSSG-----RNTPLSVCDLNSDTGIEIAKQIISTMVI 290 L I +L+ + S R L V D + +I K+ I+ +++ Sbjct: 299 NRSLFIFNSILEKKPNKKTISYTYYKLRKHLLDVGDFINQIEFDIIKKFIAHVIL 353 Score = 42.0 bits (97), Expect = 3e-006 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 16/158 (10%) Query: 25 DPN-MVNEYGCSLLHCAVENGNTEIARILLLEGANPD-LYTE-STP--TALHRAVILRHY 79 DPN +VNEY + ++ + +I ++L+ G N + L E STP T L +H Sbjct: 25 DPNEIVNEYSLFQKYLQRDSPSVDIVKLLINLGGNVNGLENEYSTPLCTILSNIKKYKHM 84 Query: 80 -DIVNLLMEFNVDPDNYENHESRTPLEYAVKLNDVKMTKTLLDY----GADAEDIYRFNC 134 D+V +L+E N D N +N + TPL + +K K +L Y GA+ + + Sbjct: 85 LDVVKILIENNADV-NKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGY 143 Query: 135 PINDAAANGN-----LEICKLLIDAGARINSRSMGSVY 167 + N +EI K+L+++G IN+ S Y Sbjct: 144 TMLQVYVKTNHHIIDIEIIKILLESGIDINTISNKEKY 181 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.317 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,756 Number of Sequences: 156 Number of extensions: 2255 Number of successful extensions: 19 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 4 length of query: 437 length of database: 48,119 effective HSP length: 64 effective length of query: 373 effective length of database: 38,135 effective search space: 14224355 effective search space used: 14224355 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634685|ref|NP_038978.1| ORF FPV015 hypothetical protein [Fowlpox virus] (177 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,119 Number of Sequences: 156 Number of extensions: 1012 Number of successful extensions: 3 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 177 length of database: 48,119 effective HSP length: 57 effective length of query: 120 effective length of database: 39,227 effective search space: 4707240 effective search space used: 4707240 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634686|ref|NP_038979.1| ORF FPV016 hypothetical protein [Fowlpox virus] (238 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.137 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,085 Number of Sequences: 156 Number of extensions: 1143 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 238 length of database: 48,119 effective HSP length: 59 effective length of query: 179 effective length of database: 38,915 effective search space: 6965785 effective search space used: 6965785 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634687|ref|NP_038980.1| ORF FPV017 V-type Ig domain [Fowlpox virus] (245 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,132 Number of Sequences: 156 Number of extensions: 1722 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 245 length of database: 48,119 effective HSP length: 60 effective length of query: 185 effective length of database: 38,759 effective search space: 7170415 effective search space used: 7170415 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634688|ref|NP_038981.1| ORF FPV018 Ankyrin repeat gene family protein [Fowlpox virus] (700 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 62 7e-012 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 52 7e-009 gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 47 1e-007 gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S782... 44 1e-006 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 61.6 bits (148), Expect = 7e-012 Identities = 71/306 (23%), Positives = 136/306 (44%), Gaps = 34/306 (11%) Query: 215 AVNIELVKHFISNNLLADTDTALEDYFLEAVKTNSPKMVKLFLDSGIDIN-STICENSHT 273 AV + + F N D ++ L Y K S +++L L++G D+N + + S T Sbjct: 18 AVELLIRTGFDVNEENCDNESILLLYLKR--KDVSIDILRLLLENGADVNYRSYYDTSIT 75 Query: 274 ALYHAVEQENVTL---VMLLLNHGADPDI---GDIYSMLKYAIMSSKHGVKLFNILVKNG 327 ++ E ++ T+ ++LLL GAD ++ +Y+++ + + +F L+ G Sbjct: 76 SVIRNYELDSNTIKQIIILLLKFGADINLKPFNGVYTIMPFIYNFHINNCNMFKFLLSKG 135 Query: 328 ARIRCCNDILIEAICKRYYSIIS-YILSLPVNYLPISILCMCIYELRNLPITRKLLKKIN 386 ++ NDI I R +++ Y S V I IL N+ + K K + Sbjct: 136 IYVK--NDI----IDSRGFNLFHMYFESFSVKIDVIKILLSF-----NVGLFEKSFKGLT 184 Query: 387 DINVSCDACNMYPIHAAVSINTSRLTRLLINKGADVNVRNRYGKTPIHLACMYSKIGN-- 444 +N+ D + + + ++ + LI+KG ++ N K+ + +KI + Sbjct: 185 PMNIYFDHF--------IDVISLKVIKYLISKGVNIETNNNGSKSLLETFLRSNKILSRK 236 Query: 445 -IKVL--IKNGANVNERDNYGITPLMICSREGKVSNMEYLLANGADVNQTDYDKNTALTY 501 KVL I +N+ D G+ P++I ++ +LL G D+ NT +TY Sbjct: 237 CFKVLNFILKYVKLNKVDEKGLNPILISAKADNYDAFNHLLKLGDDIYNVSKKGNTVITY 296 Query: 502 AIRNKS 507 AI+ ++ Sbjct: 297 AIKREN 302 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 51.6 bits (122), Expect = 7e-009 Identities = 105/511 (20%), Positives = 209/511 (40%), Gaps = 63/511 (12%) Query: 225 ISNNLLADTDTALEDYFLEAVKTNSPKMVKLFLDSGIDINSTICENSHTALYHAVEQE-- 282 I+ N++ L +LE+ ++KL + + +++N + T L+ + + Sbjct: 139 INFNIVRSDGYNLLHLYLESCNNIKLSVLKLLIKNNVNVNGLTRFRNLTPLHIYLCKGYC 198 Query: 283 -NVTLVMLLLNHGADPDIGDIYSMLKYAIMSSKHGVKLFNIL----VKNGARIRCCNDIL 337 N +++ L++ G++ + G L Y+ ++ K+F L +K GA I ++ Sbjct: 199 LNYSVINFLIDTGSEINCGK--ETLLYSFFTTCDNEKVFKSLTTKLIKKGADINQKSESG 256 Query: 338 IEAICK--RYYSI-----ISYILSLPVNYL---PISILCMCIYELRNLPITRKLLKKIND 387 + + Y + I +ILS N L P S + LR ++ + + + Sbjct: 257 LTPLMGFVAYSDLATPNNIKFILSCGGNQLVVNPQSNETLLHIYLRRYDVSLSTISTLLE 316 Query: 388 INVSCDACNMY---PIHAAVSINTSRLTR----LLINKGADVNVRNRY---GKTPIHLAC 437 ++ ++ N P+H V N L+ LI KGA NRY KT + + Sbjct: 317 SGININSVNFKNYTPLHVYVDKNIEHLSLDVVDYLIYKGATTERVNRYDCFAKTILEVFL 376 Query: 438 MYSKIGN------IKVLIKNGANVNERDNYGITPLMICSREGKVSNMEYLLANGADVNQT 491 +K N I ++K +NE+D YG TPL+ V+ Y L G+ +N Sbjct: 377 EKNKFLNNSSRYFINYILKYFP-INEKDLYGFTPLLSSVYVNNVNFFNYFLRLGSSINVI 435 Query: 492 DYDKNTALTYAIRNKSKECTRVLLEHGADMCFMNRFHTPITIHK--THDNPAVFLAVIYL 549 T ++ I N+ K +++L+ ++ + ++ + T + I Sbjct: 436 SEIGETCVSIPIENQYKRFLKIVLDSKPNIKTIKATLRYLSDKEFNTRTKFKLMKHCIKY 495 Query: 550 YFSVINDSSIRNKQGFVRNMRFVNNHKETKSLKDEIENELSIMKDNVFYTGDKKISLYDV 609 F++ D +N RF+ + KS+ +E + ++ MK K +S+YD Sbjct: 496 LFTLDPDE--------YKNHRFI--FSKFKSVVNECQKDIITMKSTFL----KTVSVYD- 540 Query: 610 LILDKLDDL----ANTIKRIRRIDLXXXXXXXXXXXXXXXYMEKRNSAIESVLSIINEYT 665 LI +K + NT++ + + +K+ +I ++I+ ++T Sbjct: 541 LIFNKNGTMHKRYLNTMEVRKYLKSNIYAERVRCVINNSIEKDKKIDSIIKKVNILCKHT 600 Query: 666 SKDHLSRWWLLSPEIHRVIVSNLSMEDLKTI 696 W +L EI I + +S+ D++ I Sbjct: 601 I------WDILPEEIKDNIFNCMSLRDIRVI 625 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 47.4 bits (111), Expect = 1e-007 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 13/124 (10%) Query: 411 LTRLLINKGADVNVRNRYGKTPIHLACMYSK-----IGNIKVLIKNGANVNERDNYGITP 465 + +LLIN G +VN TP+ K + +K+LI+N A+VN++++ G TP Sbjct: 49 IVKLLINLGGNVNGLENEYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKNSDGETP 108 Query: 466 LMICSREGKVSN----MEYLLANGADVNQTDYDKNTALTYAIRNKSK----ECTRVLLEH 517 L G + N + Y++ GA+ D T L ++ E ++LLE Sbjct: 109 LYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIIDIEIIKILLES 168 Query: 518 GADM 521 G D+ Sbjct: 169 GIDI 172 Score = 42.0 bits (97), Expect = 5e-006 Identities = 62/294 (21%), Positives = 113/294 (38%), Gaps = 31/294 (10%) Query: 254 KLFLDSGIDINSTICENSHTALYHAVEQENVTLVMLLLNHGADPD-IGDIYSMLKYAIMS 312 KL + D N + E S Y + +V +V LL+N G + + + + YS I+S Sbjct: 17 KLSIIKSCDPNEIVNEYSLFQKYLQRDSPSVDIVKLLINLGGNVNGLENEYSTPLCTILS 76 Query: 313 S----KHGVKLFNILVKNGARIRCCND--------ILIEAICKRYYSIISYILSLPVN-- 358 + KH + + IL++N A + N +L K I+ Y++ + Sbjct: 77 NIKKYKHMLDVVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETT 136 Query: 359 ------YLPISILCMCIYELRNLPITRKLLKKINDINVSCDACNMYPIHAAVSINTSRLT 412 Y + + + + ++ I + LL+ DIN + + N R+ Sbjct: 137 LLSKDGYTMLQVYVKTNHHIIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRID 196 Query: 413 ----RLLINKGADVNVRNRYGKTPIHL---ACMYSKIG---NIKVLIKNGANVNERDNYG 462 +L ++ G + ++ K + + +Y NI I NVN+ D G Sbjct: 197 ANILKLFVDNGFIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTYINVNQVDELG 256 Query: 463 ITPLMICSREGKVSNMEYLLANGADVNQTDYDKNTALTYAIRNKSKECTRVLLE 516 PL + EY++ G ++N +T L A N+S +LE Sbjct: 257 FNPLYYSVSHNNRTIFEYIIQLGGNINCISELGDTLLFKAFENRSLFIFNSILE 310 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,967 Number of Sequences: 156 Number of extensions: 4915 Number of successful extensions: 48 Number of sequences better than 1.0e-005: 4 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 17 length of query: 700 length of database: 48,119 effective HSP length: 68 effective length of query: 632 effective length of database: 37,511 effective search space: 23706952 effective search space used: 23706952 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634689|ref|NP_038982.1| ORF FPV019 hypothetical protein [Fowlpox virus] (104 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,106 Number of Sequences: 156 Number of extensions: 652 Number of successful extensions: 4 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 104 length of database: 48,119 effective HSP length: 51 effective length of query: 53 effective length of database: 40,163 effective search space: 2128639 effective search space used: 2128639 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634690|ref|NP_038983.1| ORF FPV020 C4L/C10L-like gene family protein (vaccinia C10L) [Fowlpox virus] (426 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150446|ref|NP_150441.1| LSDV007 hypothetical protein [lumpy... 137 7e-035 >gi|15150446|ref|NP_150441.1| LSDV007 hypothetical protein [lumpy skin disease virus] Length = 355 Score = 137 bits (344), Expect = 7e-035 Identities = 88/345 (25%), Positives = 170/345 (48%), Gaps = 23/345 (6%) Query: 6 IRDGIPKMHIFSDDYFSDFKKLLIEEIETNYMDYDFSESRILDEHTGYEILDLEHCKSKQ 65 I DGI K+ F+DDYF++ KK++++ I+ Y + + ES++ D G E+++ + KQ Sbjct: 4 ISDGIIKVKTFNDDYFNNVKKIIMDMIK--YKNIIWEESKVFDHEKGIEVINTNERQCKQ 61 Query: 66 IVYESLCKDLTTKLENLIVS-QLKYIVSEVRVENKVTFVVYGVGDYLXXXXXXXXXXXXX 124 + L + L++S + +S++ ++N +T + Y GD+ Sbjct: 62 YIIRGLDDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEKGDFFNTHRDFIHFKSKN 121 Query: 125 XTLCMYILLLLQKATEGGKTKFYLKGINSLDISSDVLFDKSVYHETTIVESGVTYVALLD 184 C +++L L ++GG T ++K +DVLFDK++ H + I+ G +AL++ Sbjct: 122 -CYCYHLVLYLNNTSKGGNTNIHIKPNTIFSTKNDVLFDKTLNHSSDIITDGEKNIALIN 180 Query: 185 VTMKLKTEKG-IVDTIEYLDVS--INLYDRENNNTLCYCEVIYIAPPCNKKLVRAGILIN 241 V +K + + + YL + IN Y+ E N CYC + + ++ G+++N Sbjct: 181 VVIKYNSNNDETIFKLPYLSENNHINFYEDEGNRKFCYC--LVTVNNYSTEVDTFGLILN 238 Query: 242 RKGKCLLTHINNKIHSIEHPIVFSSFQD--VSVSKFNREYTVAYLEKNTINDIAWSSIDS 299 R GKC+L +N I ++F +F D + +S + YL+ +IAW +++S Sbjct: 239 RSGKCVL--VNKYDDIITEKLIFENFDDMCMEISFSYNDIIFDYLKNEDGKNIAWKALNS 296 Query: 300 NENDNYLPNDKELFDKLMKISSKEHAKCYEIEYIDESNEDAEPYY 344 + ++ + P K FD L + ++Y++ + +D YY Sbjct: 297 SCDEIWYPKSKNDFDFLKDL----------VKYVNNNLKDKINYY 331 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.317 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,036 Number of Sequences: 156 Number of extensions: 3341 Number of successful extensions: 29 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 2 length of query: 426 length of database: 48,119 effective HSP length: 64 effective length of query: 362 effective length of database: 38,135 effective search space: 13804870 effective search space used: 13804870 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634691|ref|NP_038984.1| ORF FPV021 G protein-coupled receptor gene family protein [Fowlpox virus] (320 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150450|ref|NP_150445.1| LSDV011 CC chemokine receptor-like ... 65 2e-013 >gi|15150450|ref|NP_150445.1| LSDV011 CC chemokine receptor-like protein S78201 [lumpy skin disease virus] Length = 381 Score = 65.5 bits (158), Expect = 2e-013 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 4/185 (2%) Query: 20 ILLIYFISFIVGFPGNCTVIWFTGYRWKKSVTTIWFLNLAIADTLFVIFIPFEITYILMG 79 ++ +Y F +G GN V+ K++ ++ LNL ++D +FV+ PF + Y + Sbjct: 94 LITLYSTIFFLGLFGNIIVLTVLRKYKIKTIQDMFLLNLTLSDLIFVLVFPFNL-YDSIA 152 Query: 80 HYWPFGLFVCRIGSLMFNTGMYASIFFLTFISIDRYCLAFRRDICNKYRYRXXXXXXXXX 139 W G +C+ ++ + G Y S+ F+T +SIDRY R + Sbjct: 153 KQWSLGDCLCKFKAMFYFVGFYNSMSFITLMSIDRYLAVVHPVKSMPIRTKRYGIVLSMV 212 Query: 140 XXXXXXLLSTPYMYFKNTNEKYRNNRDCLEDYHSDNNTYLLRRVVFCISLVMRYLVPSVV 199 + S P M F T + Y +++DN + F I+ + ++P + Sbjct: 213 VWIVSTIESFPIMLFYETKKVY--GITYCHVFYNDNAKIWKLFINFEIN-IFGMIIPLTI 269 Query: 200 MLFCY 204 +L+CY Sbjct: 270 LLYCY 274 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.331 0.144 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,866 Number of Sequences: 156 Number of extensions: 1756 Number of successful extensions: 10 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 1 length of query: 320 length of database: 48,119 effective HSP length: 62 effective length of query: 258 effective length of database: 38,447 effective search space: 9919326 effective search space used: 9919326 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634692|ref|NP_038985.1| ORF FPV022 Ankyrin repeat gene family protein [Fowlpox virus] (578 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 59 5e-011 gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 58 6e-011 gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 49 3e-008 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 58.5 bits (140), Expect = 5e-011 Identities = 107/495 (21%), Positives = 214/495 (42%), Gaps = 65/495 (13%) Query: 83 TMAKILVSYGASV--DVCYKGETPLLTAI---KTGYIEIIDYLLSLEPSGPY---PGHDM 134 ++ +++ SYG S + K P+L + K +I + +YL + + G+++ Sbjct: 92 SIIELITSYGVSFNDEPIKKDSYPILFLVSNEKFNHISLYEYLENNNINFNIVRSDGYNL 151 Query: 135 IYDKLTLESCS--------LLIKNNIRLDIPDRYGH-TALYYAVKKG---NLSLIKLLVE 182 ++ L LESC+ LLIKNN+ ++ R+ + T L+ + KG N S+I L++ Sbjct: 152 LH--LYLESCNNIKLSVLKLLIKNNVNVNGLTRFRNLTPLHIYLCKGYCLNYSVINFLID 209 Query: 183 NKAITDNIERIKILRRCIVTHYNIEVLKILSL-------DRDILGTEGTTALHYAVEAER 235 + N + +L T N +V K L+ D + G T L V Sbjct: 210 TGSEI-NCGKETLLYSFFTTCDNEKVFKSLTTKLIKKGADINQKSESGLTPLMGFVAYSD 268 Query: 236 LEA---VRYLLDIGCDPKVLDEHSVSPLYYAIKRKNKIILDELIKFYTVEFMVNMD--KR 290 L ++++L G + V++ S L + R+ + L + +N K Sbjct: 269 LATPNNIKFILSCGGNQLVVNPQSNETLLHIYLRRYDVSLSTISTLLESGININSVNFKN 328 Query: 291 TLPLAMY------YCSIDELKNLMHG---------IKDIAXXXXXXXXXXXXXIKTNNPE 335 PL +Y + S+D + L++ A + ++ Sbjct: 329 YTPLHVYVDKNIEHLSLDVVDYLIYKGATTERVNRYDCFAKTILEVFLEKNKFLNNSSRY 388 Query: 336 IVSLILGLGANINKRDLYGNIPLQTAIIYQTDNVFNLLLQKGADVNAKNSDGNTILHTLA 395 ++ IL IN++DLYG PL +++ N FN L+ G+ +N + G T + ++ Sbjct: 389 FINYILKYFP-INEKDLYGFTPLLSSVYVNNVNFFNYFLRLGSSINVISEIGETCV-SIP 446 Query: 396 ACCKYKK-IKLVLDLGSDINSVNTNGRTPIEEACPCKKTIRTLISHLIIMIKKNKELIKD 454 +YK+ +K+VLD +I ++ R ++ + + L+ H I + D Sbjct: 447 IENQYKRFLKIVLDSKPNIKTIKATLRYLSDKEFNTRTKFK-LMKHCIKYL-----FTLD 500 Query: 455 PLVIRSVSFINGIEYYKNIMLQCENELNELINQKLVRGYSLFDFVIEKDYNVIARFVNHP 514 P ++ FI +K+++ +C+ ++ + ++ S++D + K+ + R++N Sbjct: 501 PDEYKNHRFI--FSKFKSVVNECQKDIITM-KSTFLKTVSVYDLIFNKNGTMHKRYLNTM 557 Query: 515 KL-KVLKQTANVYKE 528 ++ K LK +N+Y E Sbjct: 558 EVRKYLK--SNIYAE 570 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 58.2 bits (139), Expect = 6e-011 Identities = 100/464 (21%), Positives = 190/464 (40%), Gaps = 89/464 (19%) Query: 138 KLTLESCSLLIKNNIRLDIPDRYGHTALYYAVKKG----NLSLIKLLVENKAITDNIER- 192 K L+ +LI+NN ++ + G T LY + G N ++ +++ A T + + Sbjct: 82 KHMLDVVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKD 141 Query: 193 -IKILRRCIVTHYNI---EVLKIL---SLDRDILGTE---GTTALHYAVEAERLEA--VR 240 +L+ + T+++I E++KIL +D + + + T ++ +R++A ++ Sbjct: 142 GYTMLQVYVKTNHHIIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRIDANILK 201 Query: 241 YLLDIGCDPKVLDEHSVSPLYYAIKRKNKIILDELIKFYTVEFMVN--MDKRTLPLAMYY 298 +D G + IK+++K +L+++ N + K L Y Sbjct: 202 LFVDNG---------------FIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTY 246 Query: 299 CSIDELKNLMHGIKDIAXXXXXXXXXXXXXIKTNNPEIVSLILGLGANINKRDLYGNIPL 358 +++++ L G + + NN I I+ LG NIN G+ L Sbjct: 247 INVNQVDEL--GFNPL-----------YYSVSHNNRTIFEYIIQLGGNINCISELGDTLL 293 Query: 359 QTAIIYQTDNVFNLLLQKGADVNAKNSDGNTILHTLAACCKYKKIKLVLDLGSDINSVNT 418 A ++ +FN +L+ K + TI +T YK K +LD+G IN + Sbjct: 294 FKAFENRSLFIFNSILE-------KKPNKKTISYTY-----YKLRKHLLDVGDFINQIEF 341 Query: 419 NGRTPIEEACPCKKTIRTLISHLIIMIKKNKELIKDPLVIRSVSFINGIEYYKNIMLQCE 478 + I+ I+H+I+ +K + R+ +FI Y+ + + +C Sbjct: 342 D-------------IIKKFIAHVILYVKNFS------VRNRTKAFI----YFDDFIEKCT 378 Query: 479 NELNELINQKLVRGYSLFDFVIEKDYNVIARFVNHPKLKVLKQTANVYKELADKNIGMSL 538 N I+ + ++F K Y I+ N+ KL Y + KNI S Sbjct: 379 KSSN-YIHNTYINNETIFQLCFNKKYIPISVISNNEKLLKKHTKLFYYGNILKKNIEKSK 437 Query: 539 TRYTLLERA------VLTTEPYLHMLPLEIRSIICCFLSNNELE 576 Y + + + T Y + +PLEI+ I LS N++E Sbjct: 438 KYYENIYKVSCCISNLCDTCSYWNTIPLEIKFKIVNNLSLNDIE 481 Score = 46.6 bits (109), Expect = 2e-007 Identities = 38/137 (27%), Positives = 68/137 (48%), Gaps = 17/137 (12%) Query: 335 EIVSLILGLGANINKRDLYGNIPLQTAI-----IYQTDNVFNLLLQKGADVNAKNSDGNT 389 +IV L++ LG N+N + + PL T + +V +L++ ADVN KNSDG T Sbjct: 48 DIVKLLINLGGNVNGLENEYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKNSDGET 107 Query: 390 ILHTLAACCKYKKIKLVL----DLGSDINSVNTNGRTPIEEACPCKKTIRTLISHLIIMI 445 L+ L + K K +L +G++ ++ +G T ++ + +H II I Sbjct: 108 PLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQ--------VYVKTNHHIIDI 159 Query: 446 KKNKELIKDPLVIRSVS 462 + K L++ + I ++S Sbjct: 160 EIIKILLESGIDINTIS 176 >gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lumpy skin disease virus] Length = 447 Score = 49.3 bits (116), Expect = 3e-008 Identities = 102/455 (22%), Positives = 181/455 (39%), Gaps = 73/455 (16%) Query: 155 DIPDRYGHTALYYAVKKGNLSLIKLLVENKAITDNIERIKILRRCIVTHYNIEVLKILSL 214 DIP Y H +Y +L+ ++ NK+I+ ++++ K + +V + Sbjct: 32 DIPTTY-HKGIYN-------NLLLTVLGNKSISLSVQKYKKILSFLVDN---------GA 74 Query: 215 DRDILGTEGTTALHYAVEAER---LEAVRYLLDIGCD-PKVLDEHSVSPLYYAIKRKNKI 270 D + ALHY + + ++ +++L+ G D K + +V Y NK Sbjct: 75 DLNTKIKYKYNALHYYLYSNSNVTVDIIKFLIKKGADITKKCNGDNVLHTYLC----NKN 130 Query: 271 ILDELIKFYTVEFMVNMDKRTL----PLAMYY------CSIDELKNL------MHGIKDI 314 I ++IKF V +++ R L P+ +Y C ID LK L ++ +DI Sbjct: 131 IDFKVIKFL-VNKKIDLGDRNLDDHTPVNIYIRNKRNNCEIDTLKLLFLVDFNIYNKEDI 189 Query: 315 AXXXXXXXXXXXXXIKTNNPEIVSLILGLGANINKRDLYGNIPLQTAIIYQTDNVFNLLL 374 + +IV+ IL +IN D G P+ A + F+ L Sbjct: 190 FLSALDVFLDYLKSYTRKSLDIVNYILE-NISINSVDSNGFNPILYATVSGQKVFFDYFL 248 Query: 375 QKGADVNAKNSDGNTILHTLAACCKYKKIKLVLDLGSDINSVNTNGRTPIEEACPCKKTI 434 + G +N S G T C Y K L ++ + IE C Sbjct: 249 KLGCSINITTSCGETCGSLSLMDCDYCTFKTFLSKKPNLQT--------IENTLSCLSNY 300 Query: 435 RTLISHLIIMIKKNKELIKDPLVIRSVSFINGIE----YYKNIMLQCENELNELINQKLV 490 I + + K KEL+ + ++ S F N E Y+ + + + ++ + K + Sbjct: 301 LEDIYYCDLKFKMFKELLLEAFMLDS-EFYNRHESIKLYFPKTISLYKEPIVQMCSDK-I 358 Query: 491 RGYSLFDFVIEKD-----YNVIARFVNHPKLKVLKQTANVYKE--LADKNIGMSLTRYTL 543 S++D + + YN ++N K LK N+ ++ LA K ++ + Sbjct: 359 GDKSVYDIIFKNSDIRYCYN---DYIN--KYTNLKYYGNLIRKCILASKMRKKNIVKII- 412 Query: 544 LERAVLTTEPYLHMLPLEIRSIICCFLSNNELEKL 578 + PY + LP EI+ I FLS+NE++ L Sbjct: 413 ---KTINIAPYWNTLPTEIKMYIINFLSDNEIKLL 444 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.140 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,614 Number of Sequences: 156 Number of extensions: 3803 Number of successful extensions: 43 Number of sequences better than 1.0e-005: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 11 length of query: 578 length of database: 48,119 effective HSP length: 67 effective length of query: 511 effective length of database: 37,667 effective search space: 19247837 effective search space used: 19247837 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634693|ref|NP_038986.1| ORF FPV023 Ankyrin repeat gene family protein [Fowlpox virus] (434 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 58 6e-011 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 43 1e-006 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 43 2e-006 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 57.8 bits (138), Expect = 6e-011 Identities = 66/260 (25%), Positives = 117/260 (44%), Gaps = 28/260 (10%) Query: 121 IMDYCKDDEISKCLTISRMEPSRQIEEIQIMDILLSKGIDINFKDDIGNTALHYACD--- 177 I+ C +EI ++ + R + I+ +L++ G ++N ++ +T L Sbjct: 20 IIKSCDPNEIVNEYSLFQKYLQRDSPSVDIVKLLINLGGNVNGLENEYSTPLCTILSNIK 79 Query: 178 -YRNGLNMVRHLIKNGADINIENDYGTTPLACAVST----RNIELVSILLDSGADPNXXX 232 Y++ L++V+ LI+N AD+N +N G TPL C +S N E++ ++ GA+ Sbjct: 80 KYKHMLDVVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLS 139 Query: 233 XXXIGTKVLHTAVGSG----NFNIAKELIESGADPN-IGDKAGVTPLHV---AAIDEDSY 284 G +L V + + I K L+ESG D N I +K L ID Sbjct: 140 KD--GYTMLQVYVKTNHHIIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRIDA 197 Query: 285 ALLELLLDNGADPNIKCSNGTTPLFQ----AMHNYNRVK-----LLFMYGADINIIDNQG 335 +L+L +DNG + + L + +++ RVK +F Y ++N +D G Sbjct: 198 NILKLFVDNGFIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTY-INVNQVDELG 256 Query: 336 NTPFTNLMSYDNEKLNSIII 355 P +S++N + II Sbjct: 257 FNPLYYSVSHNNRTIFEYII 276 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 43.1 bits (100), Expect = 1e-006 Identities = 65/291 (22%), Positives = 115/291 (39%), Gaps = 48/291 (16%) Query: 107 KTSYSFQRVE-LMRMIMDY---CKDDEISK-CLTISRMEPSRQIEEIQIMDILLSKGIDI 161 K Y+F V+ ++ +I Y D+ I K I + + + I + + L + I+ Sbjct: 82 KIKYNFNHVKSIIELITSYGVSFNDEPIKKDSYPILFLVSNEKFNHISLYEYLENNNINF 141 Query: 162 NFKDDIGNTALHYACDYRNG--LNMVRHLIKNGADINIENDYGTTPLACAVSTRNIELVS 219 N G LH + N L++++ LIKN ++N G T RN+ + Sbjct: 142 NIVRSDGYNLLHLYLESCNNIKLSVLKLLIKNNVNVN-----GLTRF------RNLTPLH 190 Query: 220 ILLDSGADPNXXXXXXIGTKVLHTAVGSGNFNIAKELIESGADPNIGDKAGVTPLHVAAI 279 I L G N+++ LI++G++ N G + + Sbjct: 191 IYLCKGY--------------------CLNYSVINFLIDTGSEINCGKETLLYSFFTTCD 230 Query: 280 DEDSY-ALLELLLDNGADPNIKCSNGTTPL-----FQAMHNYNRVKLLFMYGADINIIDN 333 +E + +L L+ GAD N K +G TPL + + N +K + G + +++ Sbjct: 231 NEKVFKSLTTKLIKKGADINQKSESGLTPLMGFVAYSDLATPNNIKFILSCGGNQLVVNP 290 Query: 334 QGNTPFTN--LMSYDNEKLNSIIILQIMLIRKLFNDKMYYPAGLI--KNLE 380 Q N + L YD +L+ + N K Y P + KN+E Sbjct: 291 QSNETLLHIYLRRYDVSLSTISTLLESGININSVNFKNYTPLHVYVDKNIE 341 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 42.7 bits (99), Expect = 2e-006 Identities = 52/227 (22%), Positives = 94/227 (40%), Gaps = 25/227 (11%) Query: 143 RQIEEIQIMDILLSKGIDINFKD----DIGNTALHYACDYRNGLNMVRHLIKNGADINIE 198 R+ I I+ +LL G D+N++ I + +Y D ++ L+K GADIN++ Sbjct: 46 RKDVSIDILRLLLENGADVNYRSYYDTSITSVIRNYELDSNTIKQIIILLLKFGADINLK 105 Query: 199 ---NDYGTTPLACAVSTRNIELVSILLDSGADPNXXXXXXIGTKVLHTAVGSGNFNIAKE 255 Y P N + LL G G + H S F++ + Sbjct: 106 PFNGVYTIMPFIYNFHINNCNMFKFLLSKGIYVKNDIIDSRGFNLFHMYFES--FSVKID 163 Query: 256 LIESGADPNIG--DKA--GVTPLHV---AAIDEDSYALLELLLDNGADPNIKCSNGTTPL 308 +I+ N+G +K+ G+TP+++ ID S +++ L+ G + +NG+ L Sbjct: 164 VIKILLSFNVGLFEKSFKGLTPMNIYFDHFIDVISLKVIKYLISKGVNIETN-NNGSKSL 222 Query: 309 FQAMHNYNRV------KLL--FMYGADINIIDNQGNTPFTNLMSYDN 347 + N++ K+L + +N +D +G P DN Sbjct: 223 LETFLRSNKILSRKCFKVLNFILKYVKLNKVDEKGLNPILISAKADN 269 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,492 Number of Sequences: 156 Number of extensions: 2668 Number of successful extensions: 39 Number of sequences better than 1.0e-005: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 13 length of query: 434 length of database: 48,119 effective HSP length: 64 effective length of query: 370 effective length of database: 38,135 effective search space: 14109950 effective search space used: 14109950 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634694|ref|NP_038987.1| ORF FPV024 Ankyrin repeat gene family protein [Fowlpox virus] (596 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 72 4e-015 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 67 1e-013 gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 57 1e-010 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 57 1e-010 gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S782... 49 3e-008 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 72.0 bits (175), Expect = 4e-015 Identities = 77/303 (25%), Positives = 130/303 (42%), Gaps = 61/303 (20%) Query: 43 YLAVSNSDIDIVKFLLDNGADINKCK---SPPLHKAINLGNV-------EMVKLLVDHGA 92 YL + +DIVK L++ G ++N + S PL L N+ ++VK+L+++ A Sbjct: 39 YLQRDSPSVDIVKLLINLGGNVNGLENEYSTPL--CTILSNIKKYKHMLDVVKILIENNA 96 Query: 93 DIEKVYL-GNSPLYLALC----KRNTNITKYLLERGA-------DPNTLFINYCDAIYNK 140 D+ K G +PLY L K N I Y+++ GA D T+ Y ++ Sbjct: 97 DVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHI 156 Query: 141 IPIDIFKILIKYKVSLNIQNSHFKTPIYYAIKCTNYPLIKLLLENNASLTIPEGYNNHYL 200 I I+I KIL++ + +N ++ K Y + + N Sbjct: 157 IDIEIIKILLESGIDINTISNKEK-----------YDTLDCYFKYNID------------ 193 Query: 201 ITAVKHNCDISILRLLIKYGVPVNEQDDLER-------TSLHYCVSAGKHDILKLLLDYD 253 D +IL+L + G + ++D + SL Y K +IL + Y Sbjct: 194 ------RIDANILKLFVDNGFIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTY- 246 Query: 254 ADPNITDSCLGTPLHYAVSRNDIIATTLLIEKGANVNIHNDTIDTVLNIAVGNRNKILIN 313 + N D PL+Y+VS N+ +I+ G N+N ++ DT+L A NR+ + N Sbjct: 247 INVNQVDELGFNPLYYSVSHNNRTIFEYIIQLGGNINCISELGDTLLFKAFENRSLFIFN 306 Query: 314 LLL 316 +L Sbjct: 307 SIL 309 Score = 56.6 bits (135), Expect = 2e-010 Identities = 92/443 (20%), Positives = 184/443 (40%), Gaps = 91/443 (20%) Query: 244 DILKLLLDYDADPNITDSCLGTPLHYAVS-----RNDIIATTLLIEKGANVNIHNDTIDT 298 DI+KLL++ + N ++ TPL +S ++ + +LIE A+VN N +T Sbjct: 48 DIVKLLINLGGNVNGLENEYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKNSDGET 107 Query: 299 VLNIAVGN----RNKILINLLLMYGANTRLKSRNPLIHKALETK------DINILSEILN 348 L + N NK ++ ++ GA T L S++ + K DI I+ +L Sbjct: 108 PLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIIDIEIIKILLE 167 Query: 349 HGAEVN-IYNREGYTPL---YIAIITFMQIKFAKLLLRYGSNPNMKNESNENTP---LHG 401 G ++N I N+E Y L + I + KL + G +++S++ L+ Sbjct: 168 SGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDNGFIIKKEDKSHKKKLMEYLNS 227 Query: 402 AILSNRL---DSVELLMSYNVDVHSINKLGHTPL----------------------SCIN 436 + NR + ++ + +Y ++V+ +++LG PL +CI+ Sbjct: 228 LLYDNRRVKKNILDFIFTY-INVNQVDELGFNPLYYSVSHNNRTIFEYIIQLGGNINCIS 286 Query: 437 YISDKIA-------TIIISKIVLDLEKDSNLFLLDGFKANIECIDQND-----RFKVIRK 484 + D + ++ I +L+ + + +K +D D F +I+K Sbjct: 287 ELGDTLLFKAFENRSLFIFNSILEKKPNKKTISYTYYKLRKHLLDVGDFINQIEFDIIKK 346 Query: 485 NCEDELKSIRNIKLNHRYSLSIFLH------SDNNNNILIRFLNHPKVEKLS-------- 530 + ++N + +R I+ + ++N I ++N+ + +L Sbjct: 347 FIAHVILYVKNFSVRNRTKAFIYFDDFIEKCTKSSNYIHNTYINNETIFQLCFNKKYIPI 406 Query: 531 SCISIYKKYIQK-TKLS--SSIRYKLIHDAIEYSNNISMI--------------NSVPIN 573 S IS +K ++K TKL +I K I + +Y NI + N++P+ Sbjct: 407 SVISNNEKLLKKHTKLFYYGNILKKNIEKSKKYYENIYKVSCCISNLCDTCSYWNTIPLE 466 Query: 574 VKYMIMEMLDNKDLKSIIDSVNK 596 +K+ I+ L D++ + + K Sbjct: 467 IKFKIVNNLSLNDIEMFLKNNKK 489 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 67.0 bits (162), Expect = 1e-013 Identities = 122/546 (22%), Positives = 218/546 (39%), Gaps = 115/546 (21%) Query: 145 IFKILIKYKVSLN---IQNSHFKTPIYYAI---KCTNYPLIKLLLENNASLTI--PEGYN 196 I +++ Y VS N I+ + PI + + K + L + L NN + I +GYN Sbjct: 93 IIELITSYGVSFNDEPIKKDSY--PILFLVSNEKFNHISLYEYLENNNINFNIVRSDGYN 150 Query: 197 NHYLITAVKHNCDISILRLLIKYGVPVNEQDDLER-TSLHYCVSAG---KHDILKLLLDY 252 +L +N +S+L+LLIK V VN T LH + G + ++ L+D Sbjct: 151 LLHLYLESCNNIKLSVLKLLIKNNVNVNGLTRFRNLTPLHIYLCKGYCLNYSVINFLIDT 210 Query: 253 DADPNITDSCLGTPLHYAVSRNDII--ATTLLIEKGANVNIHNDTIDTVL-------NIA 303 ++ N L + TT LI+KGA++N +++ T L ++A Sbjct: 211 GSEINCGKETLLYSFFTTCDNEKVFKSLTTKLIKKGADINQKSESGLTPLMGFVAYSDLA 270 Query: 304 VGNRNKILINLLLMYGANTRL---KSRNPLIHKALETKDINI--LSEILNHGAEVNIYNR 358 N I +L G N + +S L+H L D+++ +S +L G +N N Sbjct: 271 TPNN----IKFILSCGGNQLVVNPQSNETLLHIYLRRYDVSLSTISTLLESGININSVNF 326 Query: 359 EGYTPLYI-----------AIITFMQIK------------FAKLLLR--YGSNPNMKNES 393 + YTPL++ ++ ++ K FAK +L N + N S Sbjct: 327 KNYTPLHVYVDKNIEHLSLDVVDYLIYKGATTERVNRYDCFAKTILEVFLEKNKFLNNSS 386 Query: 394 -------------NEN-----TPLHGAILSNRLDSVELLMSYNVDVHSINKLGHTPLSC- 434 NE TPL ++ N ++ + ++ I+++G T +S Sbjct: 387 RYFINYILKYFPINEKDLYGFTPLLSSVYVNNVNFFNYFLRLGSSINVISEIGETCVSIP 446 Query: 435 --------INYISDKIATIIISKIVLDLEKDSNLFLLDGFKANIECI------DQND--- 477 + + D I K L D FK CI D ++ Sbjct: 447 IENQYKRFLKIVLDSKPNIKTIKATLRYLSDKEFNTRTKFKLMKHCIKYLFTLDPDEYKN 506 Query: 478 ------RFKVIRKNCEDELKSIRNIKLNHRYSLSIF-LHSDNNNNILIRFLNHPKVEKLS 530 +FK + C+ K I +K ++S++ L + N + R+LN +V Sbjct: 507 HRFIFSKFKSVVNECQ---KDIITMKSTFLKTVSVYDLIFNKNGTMHKRYLNTMEV---- 559 Query: 531 SCISIYKKYIQKTKLSSSIRYKLIHDAIEYSNNI-SMINSVPINVKYMIMEMLDNKDLKS 589 +KY++ + +R +I+++IE I S+I V I K+ I ++L + + Sbjct: 560 ------RKYLKSNIYAERVRC-VINNSIEKDKKIDSIIKKVNILCKHTIWDILPEEIKDN 612 Query: 590 IIDSVN 595 I + ++ Sbjct: 613 IFNCMS 618 >gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lumpy skin disease virus] Length = 447 Score = 57.4 bits (137), Expect = 1e-010 Identities = 53/180 (29%), Positives = 83/180 (45%), Gaps = 25/180 (13%) Query: 4 EKLRKDLHRTIRTRDLNAVKHIILKKYTFSNKNALSTPLYLAVSNSDID--------IVK 55 E+L K+++ +N +K II T +K + L + N I I+ Sbjct: 8 EELLKEIYINQSNLKINVLKKIINDIPTTYHKGIYNNLLLTVLGNKSISLSVQKYKKILS 67 Query: 56 FLLDNGADIN---KCKSPPLHKAINLGN---VEMVKLLVDHGADIEKVYLGNSPLYLALC 109 FL+DNGAD+N K K LH + + V+++K L+ GADI K G++ L+ LC Sbjct: 68 FLVDNGADLNTKIKYKYNALHYYLYSNSNVTVDIIKFLIKKGADITKKCNGDNVLHTYLC 127 Query: 110 KRNTN--ITKYLL-------ERGADPNTLFINYCDAIYNKIPIDIFKILIKYKVSLNIQN 160 +N + + K+L+ +R D +T Y N ID K+L + V NI N Sbjct: 128 NKNIDFKVIKFLVNKKIDLGDRNLDDHTPVNIYIRNKRNNCEIDTLKLL--FLVDFNIYN 185 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,532 Number of Sequences: 156 Number of extensions: 5040 Number of successful extensions: 72 Number of sequences better than 1.0e-005: 5 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 15 length of query: 596 length of database: 48,119 effective HSP length: 67 effective length of query: 529 effective length of database: 37,667 effective search space: 19925843 effective search space used: 19925843 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634695|ref|NP_038988.1| ORF FPV025 hypothetical protein [Fowlpox virus] (203 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,761 Number of Sequences: 156 Number of extensions: 948 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 203 length of database: 48,119 effective HSP length: 58 effective length of query: 145 effective length of database: 39,071 effective search space: 5665295 effective search space used: 5665295 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634696|ref|NP_038989.1| ORF FPV026 Ankyrin repeat gene family protein [Fowlpox virus] (436 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S782... 44 9e-007 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 43 2e-006 >gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S78201 [lumpy skin disease virus] Length = 211 Score = 43.9 bits (102), Expect = 9e-007 Identities = 30/117 (25%), Positives = 61/117 (51%), Gaps = 8/117 (6%) Query: 135 LRNTPLHLAIQQK--NTDIAKLLLDSGADQNITNENGNIP-IQIAVTYN---DEKMVNIL 188 L TPL +++ N +I L+++G+D N + N+ + +++N + ++V IL Sbjct: 51 LYETPLFSCVEKDKVNVEILNFLIENGSDINFKTRDNNLSALAHYLSFNKNVEPEIVKIL 110 Query: 189 LQYSPNLEIADYNGRTVLHNAVLDKN--INIVSLLLENGALVDSKCIEGYTILLSSV 243 + ++ D NG+ +LH + + N IN++ LL+++G K + IL S + Sbjct: 111 IDSGSSITEEDENGKNLLHMYMCNFNVRINVIKLLIDSGVNFLQKDFDNNNILYSYI 167 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 42.7 bits (99), Expect = 2e-006 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 9/130 (6%) Query: 114 NKDIVSILLYAGADVNNTRCYLRNTPL-HLAIQQKNTDIAKLLLDSGADQNITNENGNIP 172 +KD V +L+ G DVN C + L +L + + DI +LLL++GAD N + Sbjct: 15 DKDAVELLIRTGFDVNEENCDNESILLLYLKRKDVSIDILRLLLENGADVNYRSYYDTSI 74 Query: 173 IQIAVTY-----NDEKMVNILLQYSPNLEIADYNGRTVLHNAVLD---KNINIVSLLLEN 224 + Y ++++ +LL++ ++ + +NG + + + N N+ LL Sbjct: 75 TSVIRNYELDSNTIKQIIILLLKFGADINLKPFNGVYTIMPFIYNFHINNCNMFKFLLSK 134 Query: 225 GALVDSKCIE 234 G V + I+ Sbjct: 135 GIYVKNDIID 144 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.141 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,627 Number of Sequences: 156 Number of extensions: 2879 Number of successful extensions: 28 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 5 length of query: 436 length of database: 48,119 effective HSP length: 64 effective length of query: 372 effective length of database: 38,135 effective search space: 14186220 effective search space used: 14186220 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634697|ref|NP_038990.1| ORF FPV027 G protein-coupled receptor gene family protein [Fowlpox virus] (336 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150450|ref|NP_150445.1| LSDV011 CC chemokine receptor-like ... 86 1e-019 >gi|15150450|ref|NP_150445.1| LSDV011 CC chemokine receptor-like protein S78201 [lumpy skin disease virus] Length = 381 Score = 85.9 bits (211), Expect = 1e-019 Identities = 60/279 (21%), Positives = 112/279 (39%), Gaps = 10/279 (3%) Query: 24 DFTRVSLSIVFTLVFLVGIIGNAVIIWFIGFKWTKTISTLLFINLALADSLFLIFIPVYT 83 D T L +++ +F +G+ GN +++ + KTI + +NL L+D +F++ P + Sbjct: 88 DTTSFGLITLYSTIFFLGLFGNIIVLTVLRKYKIKTIQDMFLLNLTLSDLIFVLVFP-FN 146 Query: 84 VYVLSNFHWYLGEFLCRVSSFFFTTNMYASMFLLTFISIDKYLTLTSHRLXXXXXXXXXX 143 +Y W LG+ LC+ + F+ Y SM +T +SID+YL + Sbjct: 147 LYDSIAKQWSLGDCLCKFKAMFYFVGFYNSMSFITLMSIDRYLAVVHPVKSMPIRTKRYG 206 Query: 144 XXCIGAIWCISIALGVPTLYYKRVILSSSRNETRCISYYGDDKHTAXXXXXXXXXXXXXX 203 +W +S P + + T C +Y D+ A Sbjct: 207 IVLSMVVWIVSTIESFPIMLFYET--KKVYGITYCHVFYNDN---AKIWKLFINFEINIF 261 Query: 204 GYVFPMTVILLSYALIVYKVKFINKPPNRS----FMITTASIFVFLACWTPHHVLNIISL 259 G + P+T++L Y I+ +K ++ F+I S+ L V ++ L Sbjct: 262 GMIIPLTILLYCYYKILNTLKTSQTKNKKAIKMVFLIVICSVLFLLPFSVTVFVSSLYLL 321 Query: 260 YGLKSTSMYNYIKESIPFVNAIAFVYSAINPIIYIFVIR 298 ++ ++ ++ + INP+IY F R Sbjct: 322 NVFSGCMALRFVNLAVHVAEIVSLCHCFINPLIYAFCSR 360 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.329 0.141 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,102 Number of Sequences: 156 Number of extensions: 1667 Number of successful extensions: 14 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 1 length of query: 336 length of database: 48,119 effective HSP length: 62 effective length of query: 274 effective length of database: 38,447 effective search space: 10534478 effective search space used: 10534478 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634698|ref|NP_038991.1| ORF FPV028 hypothetical protein [Fowlpox virus] (180 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,888 Number of Sequences: 156 Number of extensions: 1686 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 180 length of database: 48,119 effective HSP length: 57 effective length of query: 123 effective length of database: 39,227 effective search space: 4824921 effective search space used: 4824921 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634699|ref|NP_038992.1| ORF FPV029 Conserved hypothetical protein [Fowlpox virus] (124 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,928 Number of Sequences: 156 Number of extensions: 701 Number of successful extensions: 3 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 124 length of database: 48,119 effective HSP length: 53 effective length of query: 71 effective length of database: 39,851 effective search space: 2829421 effective search space used: 2829421 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634700|ref|NP_038993.1| ORF FPV030 Alkaline phosphodiesterase [Fowlpox virus] (817 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,083 Number of Sequences: 156 Number of extensions: 5790 Number of successful extensions: 29 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 0 length of query: 817 length of database: 48,119 effective HSP length: 69 effective length of query: 748 effective length of database: 37,355 effective search space: 27941540 effective search space used: 27941540 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634701|ref|NP_038994.1| ORF FPV031 Ankyrin repeat gene family protein [Fowlpox virus] (341 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 52 2e-009 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 50 7e-009 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 48 3e-008 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 52.0 bits (123), Expect = 2e-009 Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 29/201 (14%) Query: 37 IDVVRYLVKKGVDINFQETIRDNLTPLM-IASRFNSHQ----LVELLLNNGAIINQRSLT 91 +D+V+ L+ G ++N E + TPL I S ++ +V++L+ N A +N+++ + Sbjct: 47 VDIVKLLINLGGNVNGLEN--EYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKN-S 103 Query: 92 CGNTALHLAVKN----DNRITVDILLFHGANTNITNNDGFTPLHKAVIYN---ASIDIIK 144 G T L+ + N +N+ + ++ GA T + + DG+T L V N I+IIK Sbjct: 104 DGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIIDIEIIK 163 Query: 145 KLLRYKADVNIRDNEEENTGLTPLDIAMSCNNYEIISLLVSHVIRLDYSTCMSNKTKGFD 204 LL D+N N+E+ LD N I + +++++L K + Sbjct: 164 ILLESGIDINTISNKEK---YDTLDCYFKYN----IDRIDANILKLFVDNGFIIKKEDKS 216 Query: 205 HNKKLVK-------DNKRLQR 218 H KKL++ DN+R+++ Sbjct: 217 HKKKLMEYLNSLLYDNRRVKK 237 Score = 42.0 bits (97), Expect = 2e-006 Identities = 75/381 (19%), Positives = 145/381 (37%), Gaps = 85/381 (22%) Query: 4 LIELLRITGIVTLCPKYRLDRNSLLLVATKRNY----IDVVRYLVKKGVDINFQETIRDN 59 L+ ++++ TL K D ++L V K N+ I++++ L++ G+DIN ++ Sbjct: 125 LLYMIQMGAETTLLSK---DGYTMLQVYVKTNHHIIDIEIIKILLESGIDINTISN-KEK 180 Query: 60 LTPLMIASRFNSHQL----VELLLNNGAIINQRSLT------------------------ 91 L ++N ++ ++L ++NG II + + Sbjct: 181 YDTLDCYFKYNIDRIDANILKLFVDNGFIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNIL 240 Query: 92 --------------CGNTALHLAVKNDNRITVDILLFHGANTNITNNDGFTPLHKAVIYN 137 G L+ +V ++NR + ++ G N N + G T L KA N Sbjct: 241 DFIFTYINVNQVDELGFNPLYYSVSHNNRTIFEYIIQLGGNINCISELGDTLLFKA-FEN 299 Query: 138 ASIDIIKKLLRYKADVNIRDNEEENTGLTPLDIAMSCN--NYEIISLLVSHVIRLDYSTC 195 S+ I +L K + LD+ N ++II ++HVI + Sbjct: 300 RSLFIFNSILEKKPNKKTISYTYYKLRKHLLDVGDFINQIEFDIIKKFIAHVILYVKNFS 359 Query: 196 MSNKTKGFDHNKKLVKDNKRLQRIAIHCLKDIEKMKQVSINSRFTXXXXXXXXXXXXXXR 255 + N+TK F + ++ + + + E + Q+ N ++ Sbjct: 360 VRNRTKAFIYFDDFIEKCTKSSNYIHNTYINNETIFQLCFNKKYIPIS------------ 407 Query: 256 CINKDNRFIVNFDKKLTVFNILYTDFIDTFMSRHVLLNKASKVLEDLF-----LDNDSNT 310 I+ + + + K NIL + + K+ K E+++ + N +T Sbjct: 408 VISNNEKLLKKHTKLFYYGNILKKN-----------IEKSKKYYENIYKVSCCISNLCDT 456 Query: 311 SS-WNNLPNEIKDHIFTYINN 330 S WN +P EIK F +NN Sbjct: 457 CSYWNTIPLEIK---FKIVNN 474 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 50.4 bits (119), Expect = 7e-009 Identities = 65/244 (26%), Positives = 109/244 (44%), Gaps = 23/244 (9%) Query: 5 IELLRITGIVTLCPKYRLDRNSLLLVATKRN--YIDVVRYLVKKGVDINFQETIRDNLTP 62 +ELL TG + D S+LL+ KR ID++R L++ G D+N++ ++T Sbjct: 19 VELLIRTGFDV--NEENCDNESILLLYLKRKDVSIDILRLLLENGADVNYRSYYDTSITS 76 Query: 63 LMIASRFNSH---QLVELLLNNGAIINQRSLTCGNTAL----HLAVKNDNRITVDILLFH 115 ++ +S+ Q++ LLL GA IN + T + + + N N LL Sbjct: 77 VIRNYELDSNTIKQIIILLLKFGADINLKPFNGVYTIMPFIYNFHINNCNMF--KFLLSK 134 Query: 116 G--ANTNITNNDGFTPLHKAV-IYNASIDIIKKLLRYKADVNIRDNEEENTGLTPLDIAM 172 G +I ++ GF H ++ ID+IK LL + N+ E+ GLTP++I Sbjct: 135 GIYVKNDIIDSRGFNLFHMYFESFSVKIDVIKILLSF----NVGLFEKSFKGLTPMNIYF 190 Query: 173 SCNNYEIISLLVSHVIRLDYSTCMSNKTKGFDHNKKLVKDNKRLQRIAIHCLKDIEKMKQ 232 + ++ISL V + +N + ++ NK L R L I +K Sbjct: 191 D-HFIDVISLKVIKYLISKGVNIETNNNGSKSLLETFLRSNKILSRKCFKVLNFI--LKY 247 Query: 233 VSIN 236 V +N Sbjct: 248 VKLN 251 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 48.1 bits (113), Expect = 3e-008 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 17/185 (9%) Query: 4 LIELLRITGIVTLCPKYRLDRNSLLLVATKRNYIDVVRYLVKKGVDINFQETIRDNLTPL 63 +I L TG C K L + ++ + + L+KKG DIN + LTPL Sbjct: 203 VINFLIDTGSEINCGKETLLYSFFTTCDNEKVFKSLTTKLIKKGADIN--QKSESGLTPL 260 Query: 64 M---IASRFNSHQLVELLLNNGA---IINQRSLTCGNTALHLAVK--NDNRITVDILLFH 115 M S + ++ +L+ G ++N +S T LH+ ++ + + T+ LL Sbjct: 261 MGFVAYSDLATPNNIKFILSCGGNQLVVNPQS---NETLLHIYLRRYDVSLSTISTLLES 317 Query: 116 GANTNITNNDGFTPLHKAV---IYNASIDIIKKLLRYKADVNIRDNEEENTGLTPLDIAM 172 G N N N +TPLH V I + S+D++ L+ YK R N + T L++ + Sbjct: 318 GININSVNFKNYTPLHVYVDKNIEHLSLDVVDYLI-YKGATTERVNRYDCFAKTILEVFL 376 Query: 173 SCNNY 177 N + Sbjct: 377 EKNKF 381 Score = 41.2 bits (95), Expect = 4e-006 Identities = 43/168 (25%), Positives = 73/168 (42%), Gaps = 16/168 (9%) Query: 30 VATKRNYIDVVRYLVKKGVDINFQE----TIRDNLTPLMIASRFNS-HQLVELLLNNGAI 84 V+ K IDV++ L + G N T+ I FN ++EL+ + G Sbjct: 44 VSKKHIRIDVLKILFEIGCKENLHRLSYYTLLSFFKNYKIKYNFNHVKSIIELITSYGVS 103 Query: 85 INQRSLTCGNTALHLAVKND--NRITV-DILLFHGANTNITNNDGFTPLHKAV--IYNAS 139 N + + + V N+ N I++ + L + N NI +DG+ LH + N Sbjct: 104 FNDEPIKKDSYPILFLVSNEKFNHISLYEYLENNNINFNIVRSDGYNLLHLYLESCNNIK 163 Query: 140 IDIIKKLLRYKADVNIRDNEEENTGLTPLDIAMS---CNNYEIISLLV 184 + ++K L++ +VN LTPL I + C NY +I+ L+ Sbjct: 164 LSVLKLLIKNNVNVN---GLTRFRNLTPLHIYLCKGYCLNYSVINFLI 208 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,515 Number of Sequences: 156 Number of extensions: 2478 Number of successful extensions: 37 Number of sequences better than 1.0e-005: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 13 length of query: 341 length of database: 48,119 effective HSP length: 62 effective length of query: 279 effective length of database: 38,447 effective search space: 10726713 effective search space used: 10726713 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634702|ref|NP_038995.1| ORF FPV032 DNase II [Fowlpox virus] (232 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.136 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,000 Number of Sequences: 156 Number of extensions: 1879 Number of successful extensions: 10 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 232 length of database: 48,119 effective HSP length: 59 effective length of query: 173 effective length of database: 38,915 effective search space: 6732295 effective search space used: 6732295 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634703|ref|NP_038996.1| ORF FPV033 alpha-SNAP [Fowlpox virus] (287 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.325 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,309 Number of Sequences: 156 Number of extensions: 1446 Number of successful extensions: 11 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 287 length of database: 48,119 effective HSP length: 61 effective length of query: 226 effective length of database: 38,603 effective search space: 8724278 effective search space used: 8724278 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634704|ref|NP_038997.1| ORF FPV034 Ankyrin repeat gene family protein [Fowlpox virus] (415 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 58 5e-011 gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 57 7e-011 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 55 3e-010 >gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lumpy skin disease virus] Length = 447 Score = 57.8 bits (138), Expect = 5e-011 Identities = 54/201 (26%), Positives = 93/201 (45%), Gaps = 14/201 (6%) Query: 120 KKMIELLCLHGININVKDDKGYTALYYTICNNN---YDMVCFLLEKNADIS-IVNKYSML 175 KK++ L +G ++N K Y AL+Y + +N+ D++ FL++K ADI+ N ++L Sbjct: 63 KKILSFLVDNGADLNTKIKYKYNALHYYLYSNSNVTVDIIKFLIKKGADITKKCNGDNVL 122 Query: 176 H-FLSTSNKYHNVMAVLLDKGIDV---NIINHVKAPIHVAVERNNIYGTMLLINRNADVN 231 H +L N V+ L++K ID+ N+ +H I++ +RNN L + D N Sbjct: 123 HTYLCNKNIDFKVIKFLVNKKIDLGDRNLDDHTPVNIYIRNKRNNCEIDTLKLLFLVDFN 182 Query: 232 I---KELHGGRTSLHLAIKERNYEAAFVLIN---NGANVDSFDDVGNTPIFIAASLQDVR 285 I +++ + L + + ++N +++S D G PI A Sbjct: 183 IYNKEDIFLSALDVFLDYLKSYTRKSLDIVNYILENISINSVDSNGFNPILYATVSGQKV 242 Query: 286 FMKLLLDNGADINVRNVFGET 306 F L G IN+ GET Sbjct: 243 FFDYFLKLGCSINITTSCGET 263 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 57.4 bits (137), Expect = 7e-011 Identities = 58/263 (22%), Positives = 125/263 (47%), Gaps = 38/263 (14%) Query: 78 YTLLRYAVEVDD--VNIAKILLDAGSIIN--KNDYRLLHSAITHENKK------MIELLC 127 Y+L + ++ D V+I K+L++ G +N +N+Y I KK ++++L Sbjct: 33 YSLFQKYLQRDSPSVDIVKLLINLGGNVNGLENEYSTPLCTILSNIKKYKHMLDVVKILI 92 Query: 128 LHGININVKDDKGYTALYYTICN----NNYDMVCFLLEKNADISIVNK--YSMLHFLSTS 181 + ++N K+ G T LY + N NN +++ ++++ A+ ++++K Y+ML + Sbjct: 93 ENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKT 152 Query: 182 NKYH---NVMAVLLDKGIDVNIINHVKA----PIHVAVERNNIYGTML--------LINR 226 N + ++ +LL+ GID+N I++ + + + I +L +I + Sbjct: 153 NHHIIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDNGFIIKK 212 Query: 227 NADVNIKELHGGRTSL---HLAIKERNYEAAFVLINNGANVDSFDDVGNTPIFIAASLQD 283 + K+L SL + +K+ + F IN V+ D++G P++ + S + Sbjct: 213 EDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTYIN----VNQVDELGFNPLYYSVSHNN 268 Query: 284 VRFMKLLLDNGADINVRNVFGET 306 + ++ G +IN + G+T Sbjct: 269 RTIFEYIIQLGGNINCISELGDT 291 Score = 45.8 bits (107), Expect = 2e-007 Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 10/123 (8%) Query: 82 RYAVEVDDVNIAKILLDAGSIINKNDY----RLLH--SAITHEN---KKMIELLCLHGIN 132 +Y ++ D NI K+ +D G II K D +L+ +++ ++N KK I IN Sbjct: 189 KYNIDRIDANILKLFVDNGFIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTYIN 248 Query: 133 INVKDDKGYTALYYTICNNNYDMVCFLLEKNADISIVNKY-SMLHFLSTSNKYHNVMAVL 191 +N D+ G+ LYY++ +NN + ++++ +I+ +++ L F + N+ + + Sbjct: 249 VNQVDELGFNPLYYSVSHNNRTIFEYIIQLGGNINCISELGDTLLFKAFENRSLFIFNSI 308 Query: 192 LDK 194 L+K Sbjct: 309 LEK 311 Score = 45.8 bits (107), Expect = 2e-007 Identities = 25/88 (28%), Positives = 53/88 (59%), Gaps = 5/88 (5%) Query: 256 VLINNGANVDSFDDVGNTPIF-IAASLQDVRFM----KLLLDNGADINVRNVFGETPVNM 310 +LIN G NV+ ++ +TP+ I ++++ + M K+L++N AD+N +N GETP+ Sbjct: 52 LLINLGGNVNGLENEYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKNSDGETPLYC 111 Query: 311 VITGGSKEVTQYTVSYLISLKVDNIVLN 338 +++ G + + + Y+I + + +L+ Sbjct: 112 LLSNGYIKNNKEILLYMIQMGAETTLLS 139 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 55.5 bits (132), Expect = 3e-010 Identities = 62/252 (24%), Positives = 116/252 (45%), Gaps = 36/252 (14%) Query: 91 NIAKILLDAGSIINKNDYRLLHSAITH-ENKKMIELLCLH----GININVKDDKGYTALY 145 ++ L+D GS IN LL+S T +N+K+ + L G +IN K + G T L Sbjct: 202 SVINFLIDTGSEINCGKETLLYSFFTTCDNEKVFKSLTTKLIKKGADINQKSESGLTPLM 261 Query: 146 YTICNNNY---DMVCFLLEKNADISIVNKYS---MLH-FLSTSNKYHNVMAVLLDKGIDV 198 + ++ + + F+L + +VN S +LH +L + + ++ LL+ GI++ Sbjct: 262 GFVAYSDLATPNNIKFILSCGGNQLVVNPQSNETLLHIYLRRYDVSLSTISTLLESGINI 321 Query: 199 NIINHVK-APIHVAVERNNIYGTM----LLINRNADVNIKELHG--GRTSLHLAIKERNY 251 N +N P+HV V++N + ++ LI + A + +T L + +++ + Sbjct: 322 NSVNFKNYTPLHVYVDKNIEHLSLDVVDYLIYKGATTERVNRYDCFAKTILEVFLEKNKF 381 Query: 252 EAAFVLINNGAN-----------VDSFDDVGNTPIFIAASLQDVRFMKLLLDNGADINVR 300 +NN + ++ D G TP+ + + +V F L G+ INV Sbjct: 382 ------LNNSSRYFINYILKYFPINEKDLYGFTPLLSSVYVNNVNFFNYFLRLGSSINVI 435 Query: 301 NVFGETPVNMVI 312 + GET V++ I Sbjct: 436 SEIGETCVSIPI 447 Score = 42.4 bits (98), Expect = 2e-006 Identities = 68/345 (19%), Positives = 139/345 (39%), Gaps = 72/345 (20%) Query: 120 KKMIELLCLHGININVKD-DKGYTALYYTICNNNYDMVC---FLLEKNADISIVNK--YS 173 K +IEL+ +G++ N + K + + + N ++ + +L N + +IV Y+ Sbjct: 91 KSIIELITSYGVSFNDEPIKKDSYPILFLVSNEKFNHISLYEYLENNNINFNIVRSDGYN 150 Query: 174 MLHFL--STSNKYHNVMAVLLDKGIDVNIINHVK--APIHVAVERN---NIYGTMLLINR 226 +LH S +N +V+ +L+ ++VN + + P+H+ + + N LI+ Sbjct: 151 LLHLYLESCNNIKLSVLKLLIKNNVNVNGLTRFRNLTPLHIYLCKGYCLNYSVINFLIDT 210 Query: 227 NADVNIKELHGGRTSLHLAIKERNYEAAFV-----LINNGANVDSFDDVGNTPI--FIA- 278 +++N G T L+ + E F LI GA+++ + G TP+ F+A Sbjct: 211 GSEINC----GKETLLYSFFTTCDNEKVFKSLTTKLIKKGADINQKSESGLTPLMGFVAY 266 Query: 279 ---ASLQDVRFM---------------------------------KLLLDNGADINVRNV 302 A+ +++F+ LL++G +IN N Sbjct: 267 SDLATPNNIKFILSCGGNQLVVNPQSNETLLHIYLRRYDVSLSTISTLLESGININSVNF 326 Query: 303 FGETPVNMVITGGSKEVTQYTVSYLISLKVDNIVLNDFCAYKQNMNLI----HRINYGSP 358 TP+++ + + ++ V YLI +N + + + + + ++ S Sbjct: 327 KNYTPLHVYVDKNIEHLSLDVVDYLIYKGATTERVNRYDCFAKTILEVFLEKNKFLNNSS 386 Query: 359 RLFMEYIGDIYEWHLPYSVLTDDKPINYSKIQSKVSHNESRFLPY 403 R F+ YI L Y + + ++ + S V N F Y Sbjct: 387 RYFINYI-------LKYFPINEKDLYGFTPLLSSVYVNNVNFFNY 424 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.139 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,752 Number of Sequences: 156 Number of extensions: 3247 Number of successful extensions: 47 Number of sequences better than 1.0e-005: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 11 length of query: 415 length of database: 48,119 effective HSP length: 64 effective length of query: 351 effective length of database: 38,135 effective search space: 13385385 effective search space used: 13385385 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634705|ref|NP_038998.1| ORF FPV035 hypothetical protein [Fowlpox virus] (135 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.329 0.143 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,330 Number of Sequences: 156 Number of extensions: 773 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 135 length of database: 48,119 effective HSP length: 54 effective length of query: 81 effective length of database: 39,695 effective search space: 3215295 effective search space used: 3215295 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634706|ref|NP_038999.1| ORF FPV036 hypothetical protein [Fowlpox virus] (153 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.326 0.142 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,805 Number of Sequences: 156 Number of extensions: 1601 Number of successful extensions: 12 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 153 length of database: 48,119 effective HSP length: 55 effective length of query: 98 effective length of database: 39,539 effective search space: 3874822 effective search space used: 3874822 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634707|ref|NP_039000.1| ORF FPV037 hypothetical protein [Fowlpox virus] (162 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.331 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,730 Number of Sequences: 156 Number of extensions: 988 Number of successful extensions: 8 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 162 length of database: 48,119 effective HSP length: 56 effective length of query: 106 effective length of database: 39,383 effective search space: 4174598 effective search space used: 4174598 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634708|ref|NP_039001.1| ORF FPV038 dUTP pyrophosphatase vaccinia F2L homolog [Fowlpox virus] (145 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150457|ref|NP_150452.1| LSDV018 dUTPase [lumpy skin disease... 167 2e-044 >gi|15150457|ref|NP_150452.1| LSDV018 dUTPase [lumpy skin disease virus] Length = 146 Score = 167 bits (422), Expect = 2e-044 Identities = 82/141 (58%), Positives = 103/141 (72%), Gaps = 3/141 (2%) Query: 4 VTVYKISDRAKLPYKQTSYSAGYDLYSAYDYVIEPMNKELIKTDIILKIPNGYYGRIAPR 63 V ++S AKLP K T +SAGYDLYSAYDY+++ + L+KTDI L IP YGRIAPR Sbjct: 8 VNCIRLSAFAKLPTKSTDFSAGYDLYSAYDYIVKSKERILVKTDISLSIPKKCYGRIAPR 67 Query: 64 SGLAYNYFIDVGAGVIDSDYRGNVGVLLFNFGSTQFNVCKGDRIAQIIFEKIAYPKIIEV 123 SGL+ Y ID+G GVID DYRGN+GV+ N G FN+ +GDR+AQIIFEK+ YPKI EV Sbjct: 68 SGLSLYYGIDIGGGVIDEDYRGNIGVIFINNGKNTFNIKRGDRVAQIIFEKVEYPKIKEV 127 Query: 124 TTLEEINITDRGNSGFGSTGL 144 L+ T+R N+GFGS+G+ Sbjct: 128 KCLDG---TNRDNNGFGSSGI 145 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.141 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,701 Number of Sequences: 156 Number of extensions: 887 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1 length of query: 145 length of database: 48,119 effective HSP length: 55 effective length of query: 90 effective length of database: 39,539 effective search space: 3558510 effective search space used: 3558510 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634709|ref|NP_039002.1| ORF FPV039 Bcl-2 protein [Fowlpox virus] (175 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,956 Number of Sequences: 156 Number of extensions: 1284 Number of successful extensions: 8 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 175 length of database: 48,119 effective HSP length: 57 effective length of query: 118 effective length of database: 39,227 effective search space: 4628786 effective search space used: 4628786 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634710|ref|NP_039003.1| ORF FPV040 Serpin gene family protein [Fowlpox virus] (337 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150588|ref|NP_150583.1| LSDV149 serpin-like protein [lumpy ... 64 6e-013 >gi|15150588|ref|NP_150583.1| LSDV149 serpin-like protein [lumpy skin disease virus] Length = 337 Score = 63.9 bits (154), Expect = 6e-013 Identities = 78/349 (22%), Positives = 151/349 (42%), Gaps = 53/349 (15%) Query: 14 IYNYIKSTGT--ENIIIAPCSIISSLCALSKLTDHSTADKIYDILNI---ECQNIDLYMK 68 I+ ++ S + N++I+P SI S L L ++ TA +I +L C + D+ + Sbjct: 3 IFTHLSSIASPDSNVLISPVSISSILSILLFGSNGDTAIQISSVLESTYSNCCSDDIIIA 62 Query: 69 K-----INDNMNSSDIDYFCK----LGLNNVC------INQRTKNILYNCYKTCTVDETE 113 + ++ + ID F K + N+ IN+ K + ++ K + +E Sbjct: 63 NRIYGDLKLHLKTQFIDKFGKELILVNFNHNTELIKNDINEWIKRLTHDKIKNLIDEISE 122 Query: 114 GCSIKFKNVLEFEALWNRPFTAPTEEQIRK------RHNSVEIVSILVDAKRRLHMLRRL 167 + N + F+ W PF + +I K R+ ++E+++ + ++ L Sbjct: 123 NTKLLLLNAVYFKLKWKSPFDKQ-QTKIEKFWYDNSRYENIEMMNDV-----NVYPFIEL 176 Query: 168 DNIGCSVVRTSLASNRYILTTISPNEDKEEIFNLLENSINVDSLLDWIDNSKMKKAQHRL 227 +G ++ +N Y + + P + K+ NL N++ + WID KM + + Sbjct: 177 KELGLKIIELPYENN-YSMIILLPKDIKKIEKNLTGNNLTL-----WID--KMNLYEVNV 228 Query: 228 KIPKIKMSSSYDIVELLKSLGLNLM---EIKFSNVFPETTLFVERIAQSSIMEIKAESIS 284 KIPK K+ +YD+ L SLG+ + FSN+ L V+ + +EI E Sbjct: 229 KIPKFKIEETYDLKLSLISLGIIDIFDGSADFSNMTKNKNLSVDNFYHKTYIEIDEEGAE 288 Query: 285 LNTDIELEFTNNEYPKINCSSCSET--VVGKPFIFILQCRVTGNCIYFG 331 L+ Y + C+E + KPFIF+++ + + ++ G Sbjct: 289 LSA--------ASYCCVADCGCNEKEFIANKPFIFLIKDNINVSFLFIG 329 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,440 Number of Sequences: 156 Number of extensions: 2461 Number of successful extensions: 21 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 1 length of query: 337 length of database: 48,119 effective HSP length: 62 effective length of query: 275 effective length of database: 38,447 effective search space: 10572925 effective search space used: 10572925 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634711|ref|NP_039004.1| ORF FPV041 hypothetical protein [Fowlpox virus] (206 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.140 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,816 Number of Sequences: 156 Number of extensions: 1293 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 206 length of database: 48,119 effective HSP length: 58 effective length of query: 148 effective length of database: 39,071 effective search space: 5782508 effective search space used: 5782508 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634712|ref|NP_039005.1| ORF FPV042 hypothetical protein [Fowlpox virus] (85 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.141 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9996 Number of Sequences: 156 Number of extensions: 408 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 85 length of database: 48,119 effective HSP length: 48 effective length of query: 37 effective length of database: 40,631 effective search space: 1503347 effective search space used: 1503347 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 85 (37.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634713|ref|NP_039006.1| ORF FPV043 DNA ligase [Fowlpox virus] (564 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150572|ref|NP_150567.1| LSDV133 DNA ligase-like protein [lu... 493 e-142 >gi|15150572|ref|NP_150567.1| LSDV133 DNA ligase-like protein [lumpy skin disease virus] Length = 559 Score = 493 bits (1270), Expect = e-142 Identities = 263/562 (46%), Positives = 363/562 (63%), Gaps = 14/562 (2%) Query: 4 TLKEFRELCTSISTESSYVKKTKLISEFIHRGRDYNDVYIITKLLLPGTGKLIYNINDKQ 63 T K+FR LC SI+ Y++KTKLI+ FI D ++ Y++ K+LLP K +Y +ND Q Sbjct: 5 TFKKFRSLCKSIALTPKYLEKTKLINNFIS-SPDVDNKYLVIKMLLPMVNKRVYYLNDLQ 63 Query: 64 LVKLFSKIFCHDADEMYKYVINIGDVAYVIGSFLKKSKSVVDYATESTLTLHEVDCFLTR 123 ++K+FSKIF HD M + + N G V+ I F K S + + +S L L++VD FL Sbjct: 64 IIKIFSKIFKHDYKTMLEDLEN-GYVSNTIKKFFKISNTNIVPIQKSILLLNDVDMFLNH 122 Query: 124 LSTVTRENDQIKEIKKIIPRCTPNDLRHIIRLIKHDLRMNIGPKHVLSGLHKDAYGIFKL 183 L+T+T+E D+ + I CT +DL+ I IK+DL++ G K VL L K AY FK Sbjct: 123 LTTLTKEKDKQMFLTMISSICTADDLKCFILFIKNDLQIKAGVKCVLDALDKHAYNHFKN 182 Query: 184 CNNLEQVV-----QRSLEDNIKPLIELMVPLQPMLASACKTFSEAVKKCPNGIIVEFKYD 238 +L+++V + +DN+ L P++PMLA CK+ A KK +GI E KYD Sbjct: 183 SIDLKKIVFGISLNKLNDDNMV----LFTPVKPMLADVCKSSYYAFKKYKDGICAEIKYD 238 Query: 239 GERIQIHKHDKNFKYFSRSLKPITPHKVTDFEELLDRAFPSAKNMILDGEIILIDTETNQ 298 GERIQIHK + +KYFSR+LKP+ HK+ F+E L AFPSA N ILD E+ILID TN+ Sbjct: 239 GERIQIHKDNNLYKYFSRNLKPVLFHKIEGFDEFLTSAFPSANNFILDAELILIDLNTNK 298 Query: 299 PLPFGTLGINKKSMYHNACVCIFIFDCLYFNDTVLIDKPLIERRNIIHANIKEIPNRILL 358 +PFG+LGINKK+++ N+ C+F+FDCL++N+ LI P + RR II NI EI N++++ Sbjct: 299 FVPFGSLGINKKNLFKNSSTCLFVFDCLFYNNVSLISLPFVNRRKIIVDNINEIKNKVMV 358 Query: 359 SEVKNISTDEELSKLLHIVLSKNIEGFVLKDAKGVYEPGMRRWLKIKKDYLDGCVMADKA 418 SE + +++L+K++ V+ K +EG +LK Y PG R WLK+KKDYLD MAD A Sbjct: 359 SEAFYVYKEDDLNKIMDDVIKKKLEGLILKGINIDYVPGKRGWLKMKKDYLDDGSMADSA 418 Query: 419 DLVVLGAYYGKGNKSGILSSFLMGCYDTKSEKWCTVTKCSGGHTDLELQEINDNLSVVPF 478 DLVVLG+YYGKG+K G S FLMGCYD +S W TVTKCS GH D L+++ + + Sbjct: 419 DLVVLGSYYGKGSKGGAPSIFLMGCYDNESNNWKTVTKCS-GHDDDTLKKVQKEIEFLKI 477 Query: 479 --DRNAIPDWLSINKIHYPDVIISDISLAPVWEIIGSEFTRSSTHTASNISIRFPRCSRI 536 D IP WL ++KI+YPD ++ D + VWEI GS FT+S HTA ISIRFPR +I Sbjct: 478 SKDTKKIPKWLIVDKIYYPDFVVCDPKKSQVWEISGSSFTKSIHHTADGISIRFPRFKKI 537 Query: 537 REDKTYETANNLNDIKQLYAVS 558 R DK + +A +LN++K LY S Sbjct: 538 RYDKNWLSATSLNELKNLYKES 559 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,385 Number of Sequences: 156 Number of extensions: 3577 Number of successful extensions: 22 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 1 length of query: 564 length of database: 48,119 effective HSP length: 66 effective length of query: 498 effective length of database: 37,823 effective search space: 18835854 effective search space used: 18835854 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634714|ref|NP_039007.1| ORF FPV044 Serpin gene family protein [Fowlpox virus] (358 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150588|ref|NP_150583.1| LSDV149 serpin-like protein [lumpy ... 86 1e-019 >gi|15150588|ref|NP_150583.1| LSDV149 serpin-like protein [lumpy skin disease virus] Length = 337 Score = 86.3 bits (212), Expect = 1e-019 Identities = 79/347 (22%), Positives = 152/347 (43%), Gaps = 23/347 (6%) Query: 18 FYELITKRIPDKNIVISPPSIMLIVKMLLKASTDRSRNQXXXXXXXXXXXXXXXXXSNTD 77 F L + PD N++ISP SI I+ +LL S + Q + Sbjct: 4 FTHLSSIASPDSNVLISPVSISSILSILLFGSNGDTAIQISSVLESTYSNCCSDDIIIAN 63 Query: 78 KILKELLSRTEYTSIFFIDHNKRIHDSYKKYVSKSNITSLVSGDVTVLCNKMSELNYNTE 137 +I +L + + F K + V+ ++ T L+ D+ +++ + + Sbjct: 64 RIYGDL--KLHLKTQFIDKFGKELI-----LVNFNHNTELIKNDINEWIKRLT--HDKIK 114 Query: 138 DMLSSIRKPPEASILFNIKYSDLWESPFSDNDS--HKFFVTKYLTKVVPYIITSGMFGHM 195 +++ I + + +L + + W+SPF + KF+ + + + ++ + Sbjct: 115 NLIDEISENTKLLLLNAVYFKLKWKSPFDKQQTKIEKFWYDNSRYENIEMMNDVNVYPFI 174 Query: 196 YCHEIKSNIINIPYLHNTYSMLLFFADTYKNFKYLEKHITPRILLSSKIGVSNMKYSEIS 255 E+ II +PY N YSM++ K+ K +EK++T L + + M E++ Sbjct: 175 ELKELGLKIIELPY-ENNYSMIILLP---KDIKKIEKNLTGNNLT---LWIDKMNLYEVN 227 Query: 256 VSIPKFSIQTQHNIKSVFVELGITDIFDENCSMKSVSPDK-FSITSLFVKSQVDFINNKI 314 V IPKF I+ +++K + LGI DIFD + +++ +K S+ + + K+ ++ Sbjct: 228 VKIPKFKIEETYDLKLSLISLGIIDIFDGSADFSNMTKNKNLSVDNFYHKTYIEIDEEGA 287 Query: 315 VLGDQKKW----EKISNNNYHINRPFIFVIKYNKTGSVVFMGKIKDP 357 L + + N+PFIF+IK N S +F+GK P Sbjct: 288 ELSAASYCCVADCGCNEKEFIANKPFIFLIKDNINVSFLFIGKFSFP 334 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,476 Number of Sequences: 156 Number of extensions: 2651 Number of successful extensions: 22 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 1 length of query: 358 length of database: 48,119 effective HSP length: 63 effective length of query: 295 effective length of database: 38,291 effective search space: 11295845 effective search space used: 11295845 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634716|ref|NP_039008.1| ORF FPV046 Hydroxysteroid dehydrogenase [Fowlpox virus] (370 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.138 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,352 Number of Sequences: 156 Number of extensions: 2328 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 370 length of database: 48,119 effective HSP length: 63 effective length of query: 307 effective length of database: 38,291 effective search space: 11755337 effective search space used: 11755337 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634715|ref|NP_039009.1| ORF FPV045 hypothetical protein [Fowlpox virus] (73 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.332 0.146 0.483 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7016 Number of Sequences: 156 Number of extensions: 195 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 73 length of database: 48,119 effective HSP length: 49 effective length of query: 24 effective length of database: 40,475 effective search space: 971400 effective search space used: 971400 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634717|ref|NP_039010.1| ORF FPV047 Semaphorin vaccinia A39R homolog [Fowlpox virus] (612 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.137 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,986 Number of Sequences: 156 Number of extensions: 3952 Number of successful extensions: 10 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 612 length of database: 48,119 effective HSP length: 67 effective length of query: 545 effective length of database: 37,667 effective search space: 20528515 effective search space used: 20528515 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634718|ref|NP_039011.1| ORF FPV048 GNS1/SUR4 protein [Fowlpox virus] (261 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.332 0.144 0.489 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,582 Number of Sequences: 156 Number of extensions: 1524 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 261 length of database: 48,119 effective HSP length: 60 effective length of query: 201 effective length of database: 38,759 effective search space: 7790559 effective search space used: 7790559 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634719|ref|NP_039012.1| ORF FPV049 Late transcription factor [Fowlpox virus] (154 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150530|ref|NP_150525.1| LSDV091 putative late transcription... 127 2e-032 >gi|15150530|ref|NP_150525.1| LSDV091 putative late transcription factor [lumpy skin disease virus] Length = 150 Score = 127 bits (319), Expect = 2e-032 Identities = 65/148 (43%), Positives = 87/148 (57%), Gaps = 1/148 (0%) Query: 1 MYKKVNLSGIVISEPKSVKKFKTKDSIVNVLPEYYHTIADKRLEIRKDKDNCWFCKQDMN 60 M K+V L I IS PKSV K + ++LP+YY +AD ++ D CWFC Q + Sbjct: 1 MAKRVTLPDITISSPKSVAKSTKNECFSSILPKYYVPVADISIDTNSDNSYCWFCSQIL- 59 Query: 61 TYNPYFIETLYGDHIGVFCSKICRDSFANMIKSVIALREEPKISXXXXXXXXXXXXXXXX 120 P IET+ G+++G FCS ICRDSFA+M+KS IALREEPK++ Sbjct: 60 IIKPLCIETIKGNNVGAFCSTICRDSFASMVKSHIALREEPKVTLLPLVFYDNPKEVINI 119 Query: 121 INDLRHKEGIYGSCILESDKNIIKLTLR 148 IN LR+KEG+YGSC + I ++LR Sbjct: 120 INTLRNKEGVYGSCFYKEKDKSIHVSLR 147 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,029 Number of Sequences: 156 Number of extensions: 849 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 1 length of query: 154 length of database: 48,119 effective HSP length: 55 effective length of query: 99 effective length of database: 39,539 effective search space: 3914361 effective search space used: 3914361 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634720|ref|NP_039013.1| ORF FPV050 Rifampicin resistance protein [Fowlpox virus] (69 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.327 0.141 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4096 Number of Sequences: 156 Number of extensions: 74 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 69 length of database: 48,119 effective HSP length: 45 effective length of query: 24 effective length of database: 41,099 effective search space: 986376 effective search space used: 986376 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|19173809|ref|NP_597675.1| Rifampicin resistance N3L protein [Fowlpox virus] (552 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150529|ref|NP_150524.1| LSDV090 putative rifampicin resista... 595 e-173 >gi|15150529|ref|NP_150524.1| LSDV090 putative rifampicin resistance protein [lumpy skin disease virus] Length = 549 Score = 595 bits (1535), Expect = e-173 Identities = 290/536 (54%), Positives = 385/536 (71%), Gaps = 5/536 (0%) Query: 18 KRTNIFSFDVQQPTAYMPQYISVNGYHNKKDNDANQVCSVSFDIRDQHIAAINYFFISIQ 77 KR N+F D+Q PT YMPQYI++NG + N V + F+IRDQ+I A+++ +SI Sbjct: 17 KRHNVFGVDIQNPTLYMPQYITLNGVSSTGSCTQNVVST--FEIRDQYITALSHLMLSID 74 Query: 78 LPEVSGEGKFAYVPYVGYKCIQHVAITCGDITIWETDGEELFDKCVDDKIA-SLSGYSPE 136 LPEV G GKF YV YVGYK IQHV+I+C + TIWE+ GE+LF C +++ A + SG+ E Sbjct: 75 LPEVKGIGKFGYVTYVGYKSIQHVSISCNNGTIWESSGEDLFYSCKNNETALNNSGFCHE 134 Query: 137 LNDISTGYTPNDTIKDPTTLYVYIKSPFDADKTISSLKLVNNKITVTITFRSINDVIVYD 196 LN ISTG T NDTIK+ T+YVYIK+PFD +KT SSLKL ++K+ VTITF ++D+I+ D Sbjct: 135 LNSISTGLTNNDTIKESATIYVYIKTPFDMEKTFSSLKLSDSKVIVTITFNPVSDIIIRD 194 Query: 197 SKFQVERFVKDFVYSTELHLIAYAVSDIKPKSAYIELDRRVVSCSSTPTPIPVISDVYAC 256 S F E FVKDF+Y TEL I Y V +I+ K +YIE+ RRV+ + T VIS++ + Sbjct: 195 STFDYESFVKDFIYVTELSFIGYMVKNIQTKESYIEIPRRVLGQINQSTA--VISEINSV 252 Query: 257 TAMSVYVKPYYGMMENKFISYPGYKQTESDYVRCMVNRXXXXXXXXXXTVPKGFPSTATF 316 T+ SVYVKPYYG +NKFI+YPGY Q+E D++ V R P FP +A F Sbjct: 253 TSFSVYVKPYYGNTDNKFIAYPGYTQSERDFICVFVERLLEDLVVVSKEPPNYFPESAEF 312 Query: 317 VKVPVDGQINLQDVDIIVKIDNVPDDKDIYYHTNLLIFGTRKNSFVYNISKKFSSIIGMY 376 ++VP +G +N+QDVD+ +KIDNVP IYYH+N+L+FGTRKNS YNISKKFS+I G Y Sbjct: 313 IEVPPNGIVNIQDVDVFIKIDNVPCGMSIYYHSNILVFGTRKNSITYNISKKFSTITGSY 372 Query: 377 SPNTDSINFSKVNHTISITDASIPVSFWVSQKNVYQGDNRSNYSKSKDLVVNDPFRKGID 436 S +T I FS ++H+ISITD SIPV+ W Q+NVY GDNRS SK+KDL +NDPF +GID Sbjct: 373 SESTKRIMFSHISHSISITDVSIPVNLWSCQRNVYNGDNRSESSKNKDLFINDPFIRGID 432 Query: 437 MVNKTDVISRLEVRFGNDPIYSEISPITKVFNMLLTGSSINMRKIIFNMNPANIFRPTTL 496 NKTD+ISR+EVRFGND +YSE +PI+K++N LL+ + R + FN P F+PTT+ Sbjct: 433 FKNKTDIISRMEVRFGNDVLYSETNPISKIYNDLLSNCVLGTRTLKFNFTPHTFFKPTTI 492 Query: 497 NANTKRGKDKLTVRISYIDTDPNNPIHYVAKQLVVICTDLYRIDYDGNINITKITE 552 +NT RGKDKL+VR+ + DPNNPI+YV+KQ+V++C DLY++ + IN+ KITE Sbjct: 493 VSNTARGKDKLSVRVIFSSFDPNNPIYYVSKQIVLVCNDLYKVTNENGINVIKITE 548 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,026 Number of Sequences: 156 Number of extensions: 3689 Number of successful extensions: 16 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 1 length of query: 552 length of database: 48,119 effective HSP length: 66 effective length of query: 486 effective length of database: 37,823 effective search space: 18381978 effective search space used: 18381978 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634721|ref|NP_039014.1| ORF FPV051 mRNA capping enzyme, small subunit [Fowlpox virus] (289 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150528|ref|NP_150523.1| LSDV089 mRNA capping enzyme small s... 324 2e-091 >gi|15150528|ref|NP_150523.1| LSDV089 mRNA capping enzyme small subunit [lumpy skin disease virus] Length = 287 Score = 324 bits (830), Expect = 2e-091 Identities = 154/285 (54%), Positives = 208/285 (72%), Gaps = 1/285 (0%) Query: 4 DRITAFIKNGISARMPFYDTLPDMDLVFGKNHLPSLEYGANYFLQLSKINDINRLSTEML 63 D + IK GI +PFY+ LPD++L GK+ LPSLEYG NYFLQLS++ND+NRL T++L Sbjct: 2 DDVIKNIKEGIYILLPFYEHLPDLNLTLGKSPLPSLEYGTNYFLQLSRVNDLNRLPTDLL 61 Query: 64 SLYTHDLN-KESDISKLFEPYNIKTIKSYGRSIQADAVVVDLRPSNSLYKNEHPYYKSNN 122 SL+THDL E+D+ K++E NIK+IKSYG++I+ADAVV DL N +K E KSNN Sbjct: 62 SLFTHDLMIPETDLEKVYEILNIKSIKSYGKNIKADAVVADLSAKNKFFKKERDLIKSNN 121 Query: 123 YLKENNLYICDYTMITFEIYRPIFELSTEKTCIIKVPTLFGKTIVNAVRVYCSLFRYVKL 182 YL ENNLY+ DY M+TFE++RP+FE+S EK CIIK+PTLFG+ IV+ +RVYCSLF+ V+L Sbjct: 122 YLNENNLYVSDYKMLTFEVFRPLFEMSVEKFCIIKLPTLFGRCIVDTLRVYCSLFKSVRL 181 Query: 183 YKLSADSWLKDSAIIVCQQPHAANINKFITYIRKVTKSQTWLDSNNVNFILIHDSVERVF 242 +K ++DSWLKDSAI+V +P+ N + F+ I+K TKS W D+NNV F ++ V++ F Sbjct: 182 FKCASDSWLKDSAIMVASEPYKKNFDSFMAEIKKTTKSSIWKDANNVQFNILEYPVDKEF 241 Query: 243 IEKFLSFSYKIXXXXXXXXXXXXXXMTSDLQSLDNEYQKKLIKLL 287 I KFL FS + MTS+ +S++NEYQKKL+K+L Sbjct: 242 INKFLEFSTSVYESLYYVHSLLYSSMTSENKSIENEYQKKLVKIL 286 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,174 Number of Sequences: 156 Number of extensions: 2069 Number of successful extensions: 16 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 1 length of query: 289 length of database: 48,119 effective HSP length: 61 effective length of query: 228 effective length of database: 38,603 effective search space: 8801484 effective search space used: 8801484 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634722|ref|NP_039015.1| ORF FPV052 NPH-I, trancription termination factor [Fowlpox virus] (637 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150527|ref|NP_150522.1| LSDV088 putative transcription term... 775 0.0 >gi|15150527|ref|NP_150522.1| LSDV088 putative transcription termination factor [lumpy skin disease virus] Length = 635 Score = 775 bits (2001), Expect = 0.0 Identities = 391/631 (61%), Positives = 494/631 (77%), Gaps = 3/631 (0%) Query: 4 YAAYIDYALKKLDTFPVDMTGGNDNTVLLKDYQLFVAKVFLGLNSMNSILLFQETGVGKT 63 +AAYIDYAL+ + P++M G N + LK YQ FVA++FLGL+ M+SILLF ETGVGKT Sbjct: 5 HAAYIDYALRTTEKMPIEMVGPV-NKIKLKSYQHFVARIFLGLDKMHSILLFHETGVGKT 63 Query: 64 ITTVYMLKNLKKIYSEWTIIILVKKALIDDPWTHTILDYAPEVMKDCIIMNYDDQNFHNK 123 ITTV++LK+LK Y+ WTII+LVKKAL+DDPW +T++ Y+PE++KDCI + YDD+NFHNK Sbjct: 64 ITTVFILKHLKDFYTNWTIILLVKKALVDDPWMNTLMKYSPEIIKDCIFITYDDKNFHNK 123 Query: 124 FFTNIKSINVKSRIFIIIDECHNFISKSLTKEDNKKRNTKLVYNYIAKNLMQKNNKLICL 183 FFTNIK+INV+SRI +IIDECHNFISKSL KED K R TK VYNY+ KN+ N+KLICL Sbjct: 124 FFTNIKTINVRSRICVIIDECHNFISKSLIKEDGKIRPTKSVYNYLVKNIAYHNHKLICL 183 Query: 184 SATPIVNDVREFQMLVNLLRPGILTPDKSLFYNKKLIDEKEIISKLGCICSYIVNNEASI 243 SATPIVN+VREF MLVNLLRP IL +SLF NKKL++E+E+I+KLG ICSYIVNNE SI Sbjct: 184 SATPIVNNVREFTMLVNLLRPKILQT-QSLFENKKLVNERELINKLGGICSYIVNNEFSI 242 Query: 244 FEDVENTTLFAKKTVHIKHVFMSKKQEELYLKARYLERKLGISVFKIYQRMASTFVFDDI 303 FEDV+ + FA+K V++K++ M+ KQE +Y KA+ LE K GIS F+IY+RMA+TF FD + Sbjct: 243 FEDVDGSDSFARKKVYMKYINMTPKQEFIYQKAKMLEIKSGISSFRIYRRMAATFSFDVL 302 Query: 304 PDKKKLTEEEYEKFVDSLSIDFKNTLYGKKISKQSLDILSAGGTINDIKDVKDIELYNYL 363 P+KK +++ K V++L DF+N++ G+ S ++LD G + + D+ LYN L Sbjct: 303 PEKKDRNLDDFNKEVNTLYKDFENSIKGRYFSDKALDYFKKGEELKGDVNASDLSLYNEL 362 Query: 364 YEHSCKFTFVCVSIIQSKGKCLVFEPFIRSSGIEILLQYFNVFGITYIEFSSRTKDIRSK 423 E SCKFT VC+SI+ S GKCLVFEPF+ SGI ILL YF+VF I+YIEFSSRTK+ R + Sbjct: 363 KEKSCKFTEVCLSILSSPGKCLVFEPFVNQSGIIILLLYFSVFKISYIEFSSRTKNTRVQ 422 Query: 424 SVSDFNKVDNTDGEITKVCVFSQSGNEGISFLSINDIFILDMTWNEASLKQIIGRAIRLN 483 VS FN+ NTDG + KVCVFS SG EGISF SINDIFILDMTWNEASL+QIIGRAIRLN Sbjct: 423 MVSKFNEEVNTDGTVIKVCVFSLSGGEGISFFSINDIFILDMTWNEASLRQIIGRAIRLN 482 Query: 484 SHVNNPPERRYVNVYFVVAKLSSGRSSVDDILLDIIQSKSKEFSQLYKVFKHSSIEWIYS 543 SHVN P +RRYVNV+F++A+LS+G S+VDD LL+II++KSKEFSQL+KV K SSIEWIY Sbjct: 483 SHVNTPKDRRYVNVHFIIARLSNGESTVDDDLLEIIRTKSKEFSQLFKVLKESSIEWIYD 542 Query: 544 NYTDFQTVDDEKGFKKLISRNIILDENTITNKKKLTMGENIWYSFSSSLVSIHRGFKSMD 603 + +F VDDE G+ LISR+I ++ T K+ GENIW+S S LV+IH+GFK+ D Sbjct: 543 HQKNFSPVDDESGWIPLISRSIDMNAKT-KEIVKVVEGENIWFSTSKRLVNIHKGFKTND 601 Query: 604 NKIYDSEGFFITVLPDKPTIKIYEGKLIYIL 634 KI+D+EG F+ +P+ P IKI KLIYIL Sbjct: 602 GKIFDAEGNFLQTMPENPIIKIQNNKLIYIL 632 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,102 Number of Sequences: 156 Number of extensions: 5338 Number of successful extensions: 30 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 1 length of query: 637 length of database: 48,119 effective HSP length: 67 effective length of query: 570 effective length of database: 37,667 effective search space: 21470190 effective search space used: 21470190 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634723|ref|NP_039016.1| ORF FPV053 mutT motif, gene expression regulator [Fowlpox virus] (225 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150526|ref|NP_150521.1| LSDV087 mutT motif putative gene ex... 132 8e-034 gi|15150525|ref|NP_150520.1| LSDV086 mutT motif [lumpy skin dise... 60 4e-012 >gi|15150526|ref|NP_150521.1| LSDV087 mutT motif putative gene expression regulator [lumpy skin disease virus] Length = 253 Score = 132 bits (332), Expect = 8e-034 Identities = 76/196 (38%), Positives = 118/196 (59%), Gaps = 3/196 (1%) Query: 6 KNKLLLRPSVYSDNIQKIKLVAYEYGKLHAKYPLSVIGIMKTIDDKFVLCHRYNSFLFSE 65 +N+ L + + S N QKI + + L +S+ +M T D+KF+ C R +SFLF+E Sbjct: 16 RNRKLSKTYILSSNNQKIYVTGFNNQSLDNVKKVSISIVMLTSDNKFLACSRRHSFLFTE 75 Query: 66 IAFTKDKRRKIRLFKKYSKYMSNIERDILSYKLSLP---NNYNTNHIDIIFPGGKIKDLE 122 I +K+ RK RLF KYS ++ ER ILS +L + +++ + +IIFPGG I++ E Sbjct: 76 IIRSKNIFRKRRLFLKYSNFLKKNERIILSSELDIKLSSSDHENDFSNIIFPGGVIRNEE 135 Query: 123 SITNCLVREIKEELNIDSSYLAICKNCFVYGSIYDRLIDKDFEVIALYVETDLTSRQILN 182 + CL REIKEE+NIDS + + F++ I D L D+ +E I + +T LTS +I++ Sbjct: 136 DVIKCLSREIKEEVNIDSKDIFLDYRFFIHMLIEDLLTDRFYENILFFGKTFLTSNEIIH 195 Query: 183 RFIPNREIKGISFIDA 198 F N+EIK + F D+ Sbjct: 196 NFFSNKEIKSLVFFDS 211 >gi|15150525|ref|NP_150520.1| LSDV086 mutT motif [lumpy skin disease virus] Length = 213 Score = 60.5 bits (145), Expect = 4e-012 Identities = 56/175 (32%), Positives = 82/175 (46%), Gaps = 10/175 (5%) Query: 41 VIGIMKTIDDKFVLCHRYNSFLFSEIAFTKDKRRKI-RLFKKYSKYMSN-----IERDIL 94 V I T D K ++ R NSF F EI + I ++ K KYM N I+R +L Sbjct: 29 VFAICITSDGKPLIAARRNSFAFQEIMSQRVSPTSILKVSKHLLKYMYNNEIKEIQRRLL 88 Query: 95 --SYKLSLPNNYNTNHIDIIFPGGKIKDLESITNCLVREIKEELNIDSSYLAICKNCFVY 152 SY L++ N + ++I GGKI ESI+ CL REI+EE + + + C V Sbjct: 89 KGSY-LNVSQMTNNSFEELILLGGKINKSESISECLQREIQEESDSNLTIKCFGNKC-VK 146 Query: 153 GSIYDRLIDKDFEVIALYVETDLTSRQILNRFIPNREIKGISFIDARDINKDYLY 207 +I+D+L DK + T Q ++ I N EI+ + + N Y Y Sbjct: 147 LTIFDKLFDKTYISYCTTCYITETISQAISSIIYNVEIRELKSLLECSKNDKYHY 201 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.141 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,453 Number of Sequences: 156 Number of extensions: 1801 Number of successful extensions: 17 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 3 length of query: 225 length of database: 48,119 effective HSP length: 59 effective length of query: 166 effective length of database: 38,915 effective search space: 6459890 effective search space used: 6459890 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634724|ref|NP_039017.1| ORF FPV054 mutT motif [Fowlpox virus] (231 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150525|ref|NP_150520.1| LSDV086 mutT motif [lumpy skin dise... 199 6e-054 gi|15150526|ref|NP_150521.1| LSDV087 mutT motif putative gene ex... 55 1e-010 >gi|15150525|ref|NP_150520.1| LSDV086 mutT motif [lumpy skin disease virus] Length = 213 Score = 199 bits (506), Expect = 6e-054 Identities = 106/209 (50%), Positives = 141/209 (66%), Gaps = 7/209 (3%) Query: 23 ETNRERITIENTNIKDILSDRRIHIFALCITSDNIPIIGIRRTSFMYQSVISKRRSFSEI 82 ET+RE +TIE N +I ++ H+FA+CITSD P+I RR SF +Q ++S+R S + I Sbjct: 7 ETDRENVTIERVN--EIPDEKNTHVFAICITSDGKPLIAARRNSFAFQEIMSQRVSPTSI 64 Query: 83 LAVDINHLKYMYNNEIKEICIR----SIVPFTYSGFNNFEELVLLGGRVKNKESIYQCLS 138 L V + LKYMYNNEIKEI R S + + N+FEEL+LLGG++ ESI +CL Sbjct: 65 LKVSKHLLKYMYNNEIKEIQRRLLKGSYLNVSQMTNNSFEELILLGGKINKSESISECLQ 124 Query: 139 RELSEESDGILTIKTFGNKILKLTIEDKILRRTFYGYCIVCFIDQLYSEIIKP-LYNIEI 197 RE+ EESD LTIK FGNK +KLTI DK+ +T+ YC C+I + S+ I +YN+EI Sbjct: 125 REIQEESDSNLTIKCFGNKCVKLTIFDKLFDKTYISYCTTCYITETISQAISSIIYNVEI 184 Query: 198 KELGSLFDRSSNEKYEYLHFIYNTLLTYK 226 +EL SL + S N+KY YL FIYNTL+ K Sbjct: 185 RELKSLLECSKNDKYHYLLFIYNTLVNSK 213 >gi|15150526|ref|NP_150521.1| LSDV087 mutT motif putative gene expression regulator [lumpy skin disease virus] Length = 253 Score = 55.5 bits (132), Expect = 1e-010 Identities = 51/205 (24%), Positives = 97/205 (46%), Gaps = 24/205 (11%) Query: 10 NMLEKNKDCVITF--ETNRERITIENTNIKDILSDRRIHIFALCITSDNIPIIGIRRTSF 67 +++++N+ T+ +N ++I + N + + + +++ I + +TSDN + RR SF Sbjct: 12 DIIKRNRKLSKTYILSSNNQKIYVTGFNNQSLDNVKKVSISIVMLTSDNKFLACSRRHSF 71 Query: 68 MYQSVISKRRSFSEILAVDINHLKYMYNNEIKE---ICIRSIVPFTYSGF---NNFEELV 121 ++ +I + F + L Y+N +K+ I + S + S N+F ++ Sbjct: 72 LFTEIIRSKNIFRK------RRLFLKYSNFLKKNERIILSSELDIKLSSSDHENDFSNII 125 Query: 122 LLGGRVKNKESIYQCLSRELSEE-----SDGILTIKTFGNKILKLTIEDKILRRTFYGYC 176 GG ++N+E + +CLSRE+ EE D L + F + + IED + R + Sbjct: 126 FPGGVIRNEEDVIKCLSREIKEEVNIDSKDIFLDYRFF----IHMLIEDLLTDRFYENIL 181 Query: 177 IVCFIDQLYSEIIKPLY-NIEIKEL 200 +EII + N EIK L Sbjct: 182 FFGKTFLTSNEIIHNFFSNKEIKSL 206 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.142 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,901 Number of Sequences: 156 Number of extensions: 1803 Number of successful extensions: 13 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 3 length of query: 231 length of database: 48,119 effective HSP length: 59 effective length of query: 172 effective length of database: 38,915 effective search space: 6693380 effective search space used: 6693380 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634725|ref|NP_039018.1| ORF FPV055 V-type Ig domain [Fowlpox virus] (275 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,503 Number of Sequences: 156 Number of extensions: 1126 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 275 length of database: 48,119 effective HSP length: 61 effective length of query: 214 effective length of database: 38,603 effective search space: 8261042 effective search space used: 8261042 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634726|ref|NP_039019.1| ORF FPV056 RNA polymerase subunit [Fowlpox virus] (161 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150524|ref|NP_150519.1| LSDV085 RNA polymerase subunit [lum... 195 7e-053 >gi|15150524|ref|NP_150519.1| LSDV085 RNA polymerase subunit [lumpy skin disease virus] Length = 163 Score = 195 bits (495), Expect = 7e-053 Identities = 91/160 (56%), Positives = 119/160 (73%) Query: 1 MSLFNTNAYLPVVIQPHELNLDLMDNIKKAVINKYLHKETSGFMAKKIQIVEDTPMPLAE 60 MS F N YLP+ + PHEL LD+ NIK A+ +YLH+E+ G MAKKI I D +PL E Sbjct: 1 MSTFIKNVYLPINLNPHELTLDIKKNIKDAIYKEYLHRESGGIMAKKIDICFDKELPLGE 60 Query: 61 LVNNEIVVHVTCNIDYKYYKVGDIVSGILTITDESDISVVCSDLICKIRSDSGTVSYDNS 120 ++NN I+V V C + YKYYK GDIVSG L I DES+I+V+C DL+CK+ DSG+VS+++S Sbjct: 61 IINNHIMVKVPCIVTYKYYKNGDIVSGTLNIEDESNITVLCGDLVCKLNRDSGSVSFNDS 120 Query: 121 KYCFIKNGKVYANESTVTVMLKEAQSGMESSFVFLGNIIE 160 KYCF++NG Y N S VTV+LKE Q GM S+FVFL +I++ Sbjct: 121 KYCFVRNGIAYDNGSMVTVILKEEQQGMNSNFVFLASIMD 160 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,953 Number of Sequences: 156 Number of extensions: 1107 Number of successful extensions: 8 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 1 length of query: 161 length of database: 48,119 effective HSP length: 56 effective length of query: 105 effective length of database: 39,383 effective search space: 4135215 effective search space used: 4135215 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634727|ref|NP_039020.1| ORF FPV057 Early transcription factor small subunit [Fowlpox virus] (633 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150523|ref|NP_150518.1| LSDV084 putative early transcriptio... 994 0.0 gi|15150527|ref|NP_150522.1| LSDV088 putative transcription term... 60 2e-011 >gi|15150523|ref|NP_150518.1| LSDV084 putative early transcription factor small subunit [lumpy skin disease virus] Length = 635 Score = 994 bits (2570), Expect = 0.0 Identities = 480/632 (75%), Positives = 564/632 (88%) Query: 1 MNLEILELFNGHIDNIPNILPHQLATLDYLLRTILDHNESVLLFHIMGSGKTIIALLFAL 60 MNL I++LFN H+++IPNILPHQLATLDYL+R+I+D N+SVLLFHIMGSGKTIIALLFAL Sbjct: 1 MNLGIIKLFNNHVNSIPNILPHQLATLDYLVRSIIDENKSVLLFHIMGSGKTIIALLFAL 60 Query: 61 IVSKFKKVYILVPNINILNIFTYNLDLATNLINTEYVIENIHIYSTINFYSLNYNDNVVN 120 + SKFKKVYILVPNINIL IF Y++D+A NL N+++++ENI IYST +FYSLNYNDNV+N Sbjct: 61 VASKFKKVYILVPNINILKIFNYSMDVAINLFNSDFILENIFIYSTTSFYSLNYNDNVIN 120 Query: 121 YNALSKYNDSIFIIDEAHNIFGNNTGELMTIIKNKNKVPFLLLSGSPITNTPITLSNIIS 180 YN LS+YN++IFIIDEAHNIFGNNTGELMT+IKNKNK+PFLLLSGSPITNTPITLSNIIS Sbjct: 121 YNGLSRYNNAIFIIDEAHNIFGNNTGELMTVIKNKNKIPFLLLSGSPITNTPITLSNIIS 180 Query: 181 IMSDEGINFNDIIIQGKKVFQIILNEKGVSVLKNILKNKISYYELCDTELPSIIFHGKEF 240 +MSDE INF DII+QGKKVFQI+LNE GV+VLKNIL+ +ISYYE+ D++LP I +HGK F Sbjct: 181 LMSDEEINFGDIIVQGKKVFQILLNEHGVNVLKNILRGRISYYEMPDSDLPMIKYHGKNF 240 Query: 241 LDTKVVYCKMSKLQETDYINVRKLCNNEMFEKNMTNVSLAVLGPLNLANSLELLFVEQDK 300 LDT+VVYC MSKLQE DYINVRKLCNNEMFEKNM NVSLAVLG LNL N+L++LF EQDK Sbjct: 241 LDTRVVYCNMSKLQEKDYINVRKLCNNEMFEKNMNNVSLAVLGQLNLINNLDILFQEQDK 300 Query: 301 ELYPNLKINDGVLYGDELTKLNISSKFKYFIDTIGNLTGKNFIYFSNSTYGGLVIKYIML 360 ELYPNLKI++G+LYGDEL LNISSKFKYFID I +L GK+FIYFSNSTYGGLVIKYIML Sbjct: 301 ELYPNLKISNGILYGDELINLNISSKFKYFIDKITSLKGKHFIYFSNSTYGGLVIKYIML 360 Query: 361 NNGYSEYAGSQGTNPKMINGHLKTFAIVTSKMKSSLEDLLEVYNSPGNDNGEKIMFLFSS 420 +NGYSEY GSQGTNPK+ING K F IVTSKMKSSLEDLL VYNSP ND+G +IMFLFSS Sbjct: 361 SNGYSEYNGSQGTNPKLINGKPKMFTIVTSKMKSSLEDLLSVYNSPTNDDGSQIMFLFSS 420 Query: 421 NIMSESYTLKEVRNIWFMTIPDTFSQYNQILGRSIRKFSYKDVSKPVNVYLLATVYSDFN 480 NIMSESYTLKEVRNIWFMTIPDTFSQYNQILGRSIRKFSY ++++PVNVYLLATVYSDF+ Sbjct: 421 NIMSESYTLKEVRNIWFMTIPDTFSQYNQILGRSIRKFSYNNITEPVNVYLLATVYSDFD 480 Query: 481 DTITSLDDYSIDDINTLPFDIKKLLYLKFKTKETKRIYSILKDLSINYRSSPHPYITDVV 540 D ITSLDDYS+D+INTLPFDIKKLLYLKFKTKET RIYSIL+ +S NY PHPYI ++V Sbjct: 481 DDITSLDDYSLDEINTLPFDIKKLLYLKFKTKETNRIYSILESISENYTKEPHPYIIEIV 540 Query: 541 LGELVRQFFYHNSRVSINDAKLFKMVNSIFKSKEKTQKYIEKITDDHFFVTNKVFEKSLL 600 LGE++RQFFYH+SR+ ++ +L K ++S+ ++ E +KYI+ I + HFFV+NKVF+KSLL Sbjct: 541 LGEIIRQFFYHHSRIKFDNKQLIKEISSVLQNIELVKKYIDDIVNGHFFVSNKVFDKSLL 600 Query: 601 YKHKNDIIVVPFNLLFTEYSWMINFRKELNVV 632 Y++ ++II VPF L + + W +NFRKE N+V Sbjct: 601 YRYNDEIITVPFKLSYEPFVWGVNFRKEHNLV 632 >gi|15150527|ref|NP_150522.1| LSDV088 putative transcription termination factor [lumpy skin disease virus] Length = 635 Score = 60.1 bits (144), Expect = 2e-011 Identities = 110/550 (20%), Positives = 209/550 (38%), Gaps = 112/550 (20%) Query: 35 LDHNESVLLFHIMGSGKTIIALLFALIVSKF----------KKVYILVPNINILNIFTYN 84 LD S+LLFH G GKTI + + F KK + P +N L Y+ Sbjct: 46 LDKMHSILLFHETGVGKTITTVFILKHLKDFYTNWTIILLVKKALVDDPWMNTL--MKYS 103 Query: 85 LDLATNLINTEYVIENIHIYSTINFYSLNYNDNVVNYNALSKYNDSIFIIDEAHNIFGNN 144 ++ + I Y +N H N ++N + IIDE HN + Sbjct: 104 PEIIKDCIFITYDDKNFHNKFFTNIKTINVRSRIC------------VIIDECHNFISKS 151 Query: 145 T----GELMT-------IIKN--KNKVPFLLLSGSPITNTPITLSNIISIMSDEGINFND 191 G++ ++KN + + LS +PI N + +++++ + + Sbjct: 152 LIKEDGKIRPTKSVYNYLVKNIAYHNHKLICLSATPIVNNVREFTMLVNLLRPKILQTQS 211 Query: 192 IIIQGKKVFQIILNEKGVSVLKNILKNKISYYELCD-----------------TELPSII 234 + K V + L K + I+ N+ S +E D T I Sbjct: 212 LFENKKLVNERELINKLGGICSYIVNNEFSIFEDVDGSDSFARKKVYMKYINMTPKQEFI 271 Query: 235 FHGKEFLDTKV------VYCKMSKLQETDYINVRKLCNNEMFEKNMTNV----SLAVLGP 284 + + L+ K +Y +M+ D + +K N + F K + + ++ G Sbjct: 272 YQKAKMLEIKSGISSFRIYRRMAATFSFDVLPEKKDRNLDDFNKEVNTLYKDFENSIKGR 331 Query: 285 LNLANSLELLFVEQDKELYPNLKINDGVLYGDELTKLNISSKFKYFIDTIGNLTGKNFIY 344 +L+ + ++ +EL ++ +D LY + K S KF +I + GK ++ Sbjct: 332 YFSDKALD--YFKKGEELKGDVNASDLSLYNELKEK---SCKFTEVCLSILSSPGKCLVF 386 Query: 345 FSNSTYGGLVIKYI---MLNNGYSEYAGSQGTNPKMINGHLKTFAIVTSKMKSSLEDLLE 401 G++I + + Y E++ S+ K++ ++ Sbjct: 387 EPFVNQSGIIILLLYFSVFKISYIEFS---------------------SRTKNTRVQMVS 425 Query: 402 VYNSPGNDNGEKIMFLFSSNIMSESYTLKEVRNIWFMTIPDTFSQYNQILGRSIRKFSYK 461 +N N +G I S E + + +I+ + + + QI+GR+IR S+ Sbjct: 426 KFNEEVNTDGTVIKVCVFSLSGGEGISFFSINDIFILDMTWNEASLRQIIGRAIRLNSHV 485 Query: 462 DVSKP---VNVYLLATVYSDFNDTITSLDDYSIDDINTLPFDIKKLLYLKFKTKETKRIY 518 + K VNV+ + S+ T+ DD ++ I T K+KE +++ Sbjct: 486 NTPKDRRYVNVHFIIARLSNGESTV---DDDLLEIIRT-------------KSKEFSQLF 529 Query: 519 SILKDLSINY 528 +LK+ SI + Sbjct: 530 KVLKESSIEW 539 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,389 Number of Sequences: 156 Number of extensions: 5950 Number of successful extensions: 50 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 2 length of query: 633 length of database: 48,119 effective HSP length: 67 effective length of query: 566 effective length of database: 37,667 effective search space: 21319522 effective search space used: 21319522 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634728|ref|NP_039021.1| ORF FPV058 NTPase, DNA replication [Fowlpox virus] (791 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150522|ref|NP_150517.1| LSDV083 putative NTPase [lumpy skin... 871 0.0 >gi|15150522|ref|NP_150517.1| LSDV083 putative NTPase [lumpy skin disease virus] Length = 786 Score = 871 bits (2250), Expect = 0.0 Identities = 427/783 (54%), Positives = 574/783 (72%), Gaps = 14/783 (1%) Query: 8 NNHIIFVLKQIGVRTKHRENNNSKYVESFTCDELERYIYSNPDCTLFETLKDEEYYSNVR 67 NN IFVLK+IGV T HRE+ + ++V+ FTC+ELE YI NP CTLFETL+DEE YS VR Sbjct: 7 NNEYIFVLKKIGVHTSHRESEDPRFVDIFTCEELENYILKNPSCTLFETLRDEEAYSVVR 66 Query: 68 VFFDVDMDGRLD--DKYQATHNFVNIITKFVADYAYNDCKMISNHRDKDKMITDMKSNFS 125 VFFDVD+D LD D A +F+ +TKFV+ ++ +C N ++ M+SNFS Sbjct: 67 VFFDVDLDIVLDEIDYTAALEDFILNVTKFVSIFSSRECGTNQNI-----VLKCMRSNFS 121 Query: 126 ITESTDKEKTSFHLIFFNCYTTLDTLINMRKKLIVLTKESNNRLVKAIDTSVYRHKPSLR 185 +T+STD +TSFH++F + YT +DTLI M+K L+ + S N L+++ID +VYR K +LR Sbjct: 122 LTKSTDTSRTSFHIVFPDTYTNMDTLIYMKKPLLEFLRSSENPLIRSIDPAVYRRKATLR 181 Query: 186 IVGTKKDSINIHVHKKTKQNIHFKNYLFTYVDYNEEDCYYFVSEQQHQSPDLLNWKEEYI 245 IVGT+K+ N +H + + + +YLFTYV+ NE+ CY+ +S++ + W+ YI Sbjct: 182 IVGTRKNPNNDKIHIRQPPHNNISDYLFTYVNMNEKSCYFTLSKKVDDKKADVLWEPNYI 241 Query: 246 PFHDAIKKISKAIGNSIINLKDITAENFTVTPLDIYYATPCNLCKKVSHKHPHHLLISND 305 F+DA+KK+SK I N I+N+ D NFT P+ I Y PC LCKK HKH H L + N Sbjct: 242 HFNDAMKKVSKIIINEIVNINDFNVNNFTSIPIIIDYIMPCALCKKKIHKHHHQLTLGNG 301 Query: 306 CIRIYKSGNPNSCKIKTISLEGNKLFSISQQIIDLNVINVSDRGEYLVWLKNVWRMCEDD 365 ++I+K+GNP+SCK+K I+LEGNKLF+ISQ IID NVI++++RG+++VW+KN W+ D+ Sbjct: 302 ILKIFKAGNPHSCKVKAIALEGNKLFTISQLIIDSNVIHLTERGDHVVWIKNSWKFNTDE 361 Query: 366 NNITKLILYMRDHLSSDCTDLLLCPRNRKVIEHNLKDMLIDTIETDTYPEKLQFLNGVYD 425 ITKLIL M+D L S+ +LCPR RKVIE+NLKDML+DTIETDTYP L F NGV D Sbjct: 362 PLITKLILNMKDQLPSEYIPDILCPRKRKVIENNLKDMLVDTIETDTYPFMLPFKNGVLD 421 Query: 426 IKDSIFYQGNDAKKFVCTVSTGYK--YEEGINVD-DITTELMSILDDIQPKTKENFENRE 482 I FY+G ++KKF+CTVSTG+ E+ +N D +L +I++DIQP T+EN ENRE Sbjct: 422 ICSGKFYKGAESKKFICTVSTGFNLDIEQYLNEDSQEMKDLNNIINDIQPLTEENKENRE 481 Query: 483 LYEQILSSCLMGTTKQCIFFFYGETATGXXXXXXXXXXVMHNMFLETGQVILTEQMDKGP 542 LYE+ LSSCL G+TKQC+ FF+GETATG + +F+ETGQ ILT+ +DKGP Sbjct: 482 LYERTLSSCLCGSTKQCLTFFFGETATGKSTTKKLLQSSIGELFIETGQTILTDIIDKGP 541 Query: 543 NPFIANMHLKRVVFCSELPDFSCNTSKKIRSDNIKKLTEPCVVGRSCYSNKINNRNHATI 602 NPFI+NMHLKR VFCSELPDFSC+ SKKI++DNIKKLTEPC+VGR C+SN+I+N+NHA+I Sbjct: 542 NPFISNMHLKRSVFCSELPDFSCSGSKKIKADNIKKLTEPCIVGRPCFSNRIHNKNHASI 601 Query: 603 IIDTNYKPVFDKVDNAIMRRIAL---XXXXXXXXXXXXXXXXSKYDFIKPLNESLDSKIQ 659 IIDTNYKPVFDKVDNA+MRRIAL + YD +KPL+E+LD KIQ Sbjct: 602 IIDTNYKPVFDKVDNALMRRIALVKFRTHFSQYSNSDSVKNNAAYDDVKPLDENLDMKIQ 661 Query: 660 SNYFRYAFLKILLGWFSKYHVPNLRILPTPDKIPDFKFRLKVESLIIPSNSTHVKYVDKL 719 NYFRYAFL +L+ W+ KYH+P +R+ PTP+ IPDF F+L+V SL+IPS+STH+K++ L Sbjct: 662 KNYFRYAFLNLLVKWYQKYHIPTMRLFPTPEAIPDFVFQLRVGSLLIPSSSTHLKFMSSL 721 Query: 720 MKLGYITDDDGIPVLQLNIFQQKLSLHFNVKLYGQDIDSFIMKNKKYMNLADEYMSFIFI 779 K+GY+ ++D + VL L +FQQK+S HFN+K+YG DI+SFI K+KK+ N+++EY+ +IFI Sbjct: 722 SKIGYVLEND-LMVLPLQLFQQKISKHFNIKVYGNDIESFITKHKKFANVSEEYLEYIFI 780 Query: 780 EDL 782 ED+ Sbjct: 781 EDI 783 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,592 Number of Sequences: 156 Number of extensions: 6028 Number of successful extensions: 32 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 1 length of query: 791 length of database: 48,119 effective HSP length: 69 effective length of query: 722 effective length of database: 37,355 effective search space: 26970310 effective search space used: 26970310 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634729|ref|NP_039022.1| ORF FPV059 Deoxycytidine kinase [Fowlpox virus] (219 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.137 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,885 Number of Sequences: 156 Number of extensions: 1150 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 219 length of database: 48,119 effective HSP length: 59 effective length of query: 160 effective length of database: 38,915 effective search space: 6226400 effective search space used: 6226400 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634730|ref|NP_039023.1| ORF FPV060 CC chemokine gene family protein [Fowlpox virus] (188 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.138 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,258 Number of Sequences: 156 Number of extensions: 1216 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 188 length of database: 48,119 effective HSP length: 57 effective length of query: 131 effective length of database: 39,227 effective search space: 5138737 effective search space used: 5138737 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634731|ref|NP_039024.1| ORF FPV061 CC chemokine gene family protein [Fowlpox virus] (129 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.141 0.472 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,743 Number of Sequences: 156 Number of extensions: 672 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 129 length of database: 48,119 effective HSP length: 53 effective length of query: 76 effective length of database: 39,851 effective search space: 3028676 effective search space used: 3028676 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634732|ref|NP_039025.1| ORF FPV062 Uracil DNA glycosylase [Fowlpox virus] (218 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150521|ref|NP_150516.1| LSDV082 uracil DNA glycosylase [lum... 269 6e-075 >gi|15150521|ref|NP_150516.1| LSDV082 uracil DNA glycosylase [lumpy skin disease virus] Length = 218 Score = 269 bits (687), Expect = 6e-075 Identities = 119/216 (55%), Positives = 159/216 (73%) Query: 1 MKTLKLNNWPYPIEYHEDWENIINHISDVIEETGPWLLEENTSPSHENIFKQLKQSLKDK 60 MKT+K ++PY IEYH+DWE +IN + D+ +E W+L++ TSP EN FKQL+ L DK Sbjct: 1 MKTIKTKSFPYCIEYHDDWEAVINQLVDLYDEIAEWILKDETSPIPENFFKQLRNPLNDK 60 Query: 61 RVCIVGIDPYPTDATGVPFESPDFSKKTIKAIAENISRRYNVRLFKNYNFLFVEGVLAWN 120 VCI GIDPYP DATGVPFESP+FSKKTIK+IAE IS + +K YN V+GV WN Sbjct: 61 LVCICGIDPYPRDATGVPFESPNFSKKTIKSIAETISNITGISNYKGYNLNNVKGVFPWN 120 Query: 121 YYLSCREGETKSHKIFWERLADVFINHIAAYVSVFYFLGKSDFSNFRSILNSPTTVVVGY 180 YYLSC+ GETKSH + W++++ + + HI YV++ Y LGK+DFSN +SI+ P T ++GY Sbjct: 121 YYLSCKIGETKSHSLHWKKISKLLLQHITKYVNILYCLGKTDFSNIKSIIEVPVTTIIGY 180 Query: 181 HPAARNRQFDTDETFEIVNTLLELKNEPRINWVQGF 216 HPAAR+RQF D++FE +N LLE+ + I+W +GF Sbjct: 181 HPAARDRQFSKDKSFEAINILLEINGKEIIHWEEGF 216 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.138 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,418 Number of Sequences: 156 Number of extensions: 1437 Number of successful extensions: 5 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 1 length of query: 218 length of database: 48,119 effective HSP length: 59 effective length of query: 159 effective length of database: 38,915 effective search space: 6187485 effective search space used: 6187485 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634733|ref|NP_039026.1| ORF FPV063 hypothetical protein [Fowlpox virus] (400 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.139 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,267 Number of Sequences: 156 Number of extensions: 3144 Number of successful extensions: 26 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 0 length of query: 400 length of database: 48,119 effective HSP length: 64 effective length of query: 336 effective length of database: 38,135 effective search space: 12813360 effective search space used: 12813360 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634734|ref|NP_039027.1| ORF FPV064 Glutathione peroxidase [Fowlpox virus] (200 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.141 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,540 Number of Sequences: 156 Number of extensions: 1180 Number of successful extensions: 5 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 200 length of database: 48,119 effective HSP length: 58 effective length of query: 142 effective length of database: 39,071 effective search space: 5548082 effective search space used: 5548082 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634735|ref|NP_039028.1| ORF FPV065 hypothetical protein [Fowlpox virus] (111 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,930 Number of Sequences: 156 Number of extensions: 986 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 111 length of database: 48,119 effective HSP length: 52 effective length of query: 59 effective length of database: 40,007 effective search space: 2360413 effective search space used: 2360413 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634736|ref|NP_039029.1| ORF FPV066 hypothetical protein [Fowlpox virus] (122 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.139 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,518 Number of Sequences: 156 Number of extensions: 1210 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 122 length of database: 48,119 effective HSP length: 53 effective length of query: 69 effective length of database: 39,851 effective search space: 2749719 effective search space used: 2749719 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634737|ref|NP_039030.1| ORF FPV067 HT motif gene family protein [Fowlpox virus] (90 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.332 0.143 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,565 Number of Sequences: 156 Number of extensions: 420 Number of successful extensions: 3 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 90 length of database: 48,119 effective HSP length: 49 effective length of query: 41 effective length of database: 40,475 effective search space: 1659475 effective search space used: 1659475 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 85 (37.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634738|ref|NP_039031.1| ORF FPV068 hypothetical protein [Fowlpox virus] (133 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.311 0.131 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9736 Number of Sequences: 156 Number of extensions: 254 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 133 length of database: 48,119 effective HSP length: 54 effective length of query: 79 effective length of database: 39,695 effective search space: 3135905 effective search space used: 3135905 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634739|ref|NP_039032.1| ORF FPV069 Virion protein [Fowlpox virus] (270 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150520|ref|NP_150515.1| LSDV081 putative virion protein [lu... 45 2e-007 >gi|15150520|ref|NP_150515.1| LSDV081 putative virion protein [lumpy skin disease virus] Length = 245 Score = 45.1 bits (105), Expect = 2e-007 Identities = 62/251 (24%), Positives = 113/251 (44%), Gaps = 43/251 (17%) Query: 23 YILLGDTDEFINKRIILLMNNIELYYV-YEISVNDEDELYHSFITSNVVCPIKQRINLML 81 + LLG+ F + ++ +N + ++ YE+S +++ L + S+ + IK R + Sbjct: 21 FFLLGNHKGFF-ENVLEKINKYKYFFSQYEVSSDNDGVLELKNVKSSHI--IKDRY--VT 75 Query: 82 YKEYKKVIGSC-------VINNEGNIKMYSQPDKLHVYVLCYRCNGDIKTITMIKCHQLL 134 +E+ ++ C +I NI Y D + + + Y K + + C ++ Sbjct: 76 TREF--ILSGCQKEWCNEIIQKNDNITNY---DTIIIQDITYFEKKIWKRLLFVNCPEMK 130 Query: 135 KPEKEIVIDGYQVNDSSFFYTSPNLIKQINMDKSDLFYKNILLRKEINCLIRKQESSNLY 194 EI F +P +IK + +D+F KN++LR IN I Y Sbjct: 131 NSSYEI------------FLINPFVIK----NNTDIF-KNLILRSSINYFIFDN-----Y 168 Query: 195 CILNKHIVSLSDT-DIWKVIISDELFDSSDIEKLVKFDYDRDKFHAFVRAWYSGQL-SNC 252 L K + + + +I K I + ++I K++K Y R+K AFV AW++ Q+ N Sbjct: 169 APLKKILTHIYPSFNIEKTYIYINFNEINNI-KIIKKCYHRNKIRAFVYAWFNFQICENS 227 Query: 253 KEENETIKTVY 263 + ENE +K Y Sbjct: 228 EIENEKVKKKY 238 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,277 Number of Sequences: 156 Number of extensions: 2339 Number of successful extensions: 9 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 1 length of query: 270 length of database: 48,119 effective HSP length: 61 effective length of query: 209 effective length of database: 38,603 effective search space: 8068027 effective search space used: 8068027 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634740|ref|NP_039033.1| ORF FPV070 T10 gene product [Fowlpox virus] (273 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,189 Number of Sequences: 156 Number of extensions: 1790 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 273 length of database: 48,119 effective HSP length: 61 effective length of query: 212 effective length of database: 38,603 effective search space: 8183836 effective search space used: 8183836 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634741|ref|NP_039034.1| ORF FPV071 Conserved hypothetical protein [Fowlpox virus] (289 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.317 0.132 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,677 Number of Sequences: 156 Number of extensions: 1539 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 289 length of database: 48,119 effective HSP length: 61 effective length of query: 228 effective length of database: 38,603 effective search space: 8801484 effective search space used: 8801484 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634742|ref|NP_039035.1| ORF FPV072 beta-Nerve growth factor [Fowlpox virus] (186 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.137 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,619 Number of Sequences: 156 Number of extensions: 1024 Number of successful extensions: 5 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 186 length of database: 48,119 effective HSP length: 57 effective length of query: 129 effective length of database: 39,227 effective search space: 5060283 effective search space used: 5060283 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634743|ref|NP_039036.1| ORF FPV073 Interleukin binding protein [Fowlpox virus] (174 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.139 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,606 Number of Sequences: 156 Number of extensions: 880 Number of successful extensions: 4 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 174 length of database: 48,119 effective HSP length: 57 effective length of query: 117 effective length of database: 39,227 effective search space: 4589559 effective search space used: 4589559 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634744|ref|NP_039037.1| ORF FPV074 hypothetical protein [Fowlpox virus] (104 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.335 0.148 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6757 Number of Sequences: 156 Number of extensions: 187 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 104 length of database: 48,119 effective HSP length: 51 effective length of query: 53 effective length of database: 40,163 effective search space: 2128639 effective search space used: 2128639 T: 11 A: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634745|ref|NP_039038.1| ORF FPV075 N1R/p28 gene family protein [Fowlpox virus] (199 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host r... 60 6e-012 >gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host range protein [lumpy skin disease virus] Length = 240 Score = 59.7 bits (143), Expect = 6e-012 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 18/149 (12%) Query: 15 FCFINYANIEVIMLKYNGYINATKICDLGNKNFRQWCRLESSKKLIKTLNYKNGIYNKAV 74 F +NY ++VI++ N Y+N TK+C K+F W L+SS ++I + + I Sbjct: 9 FILLNYEKVKVIIVLANNYVNITKLCKPMGKSFHNWWNLKSSYQIICNIAKEEDI----- 63 Query: 75 LEIGLASNSAYK----YELVGTYVHIDLVPHIICWV-------FPSIALNF-SKILNSYL 122 E+ S + +K E+ G Y+H L+ +I+ W+ SI F SKILN+ Sbjct: 64 -EVENLSFNVWKGQETKEVYGKYIHPKLLVYILNWISEEYCAKILSIINEFNSKILNNIT 122 Query: 123 SNSYCTRLKKGSDNEDQIRSGFFSEGISK 151 +N+ ++ E+ + + F++ SK Sbjct: 123 TNTKINKIYTRLPKEESMFNAIFNKENSK 151 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,462 Number of Sequences: 156 Number of extensions: 1338 Number of successful extensions: 9 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 1 length of query: 199 length of database: 48,119 effective HSP length: 58 effective length of query: 141 effective length of database: 39,071 effective search space: 5509011 effective search space used: 5509011 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634746|ref|NP_039039.1| ORF FPV076 beta-Nerve growth factor [Fowlpox virus] (144 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.134 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,373 Number of Sequences: 156 Number of extensions: 823 Number of successful extensions: 5 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 144 length of database: 48,119 effective HSP length: 55 effective length of query: 89 effective length of database: 39,539 effective search space: 3518971 effective search space used: 3518971 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634747|ref|NP_039040.1| ORF FPV077 Glutaredoxin vaccinia G4L and Molluscum contagiosum virus MC059L homolog [Fowlpox virus] (125 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150492|ref|NP_150487.1| LSDV053 putative glutaredoxin [lump... 82 4e-019 >gi|15150492|ref|NP_150487.1| LSDV053 putative glutaredoxin [lumpy skin disease virus] Length = 126 Score = 82.4 bits (202), Expect = 4e-019 Identities = 41/120 (34%), Positives = 72/120 (59%), Gaps = 2/120 (1%) Query: 1 MKGTIILFGKPNCPLCKFSNEILSNKKIASKYEIVRINIATFFDKSKVVEILGMDKSYDL 60 MK T+ILFGKP C +C+ ++ + K + +Y+I+RINI +FF K+ ++ +D+ Sbjct: 1 MKKTLILFGKPLCGVCESISDAI--KILEDEYDILRINILSFFSKNGQIKEFEIDEGVAF 58 Query: 61 LNSIGEKLGNEYVLVFRYDDTSKQMAYIPFKKYIVIGQISQDSIDFDKLLNELETTPYNI 120 +N+ + L +E +F+Y+ + QMAY+ K+ + I + I DKL E+E +PY + Sbjct: 59 INNFFKYLSSEAASLFKYNPETGQMAYVNISKFFNLAVIDKSFIKKDKLKEEIENSPYGV 118 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.141 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,170 Number of Sequences: 156 Number of extensions: 876 Number of successful extensions: 8 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 1 length of query: 125 length of database: 48,119 effective HSP length: 53 effective length of query: 72 effective length of database: 39,851 effective search space: 2869272 effective search space used: 2869272 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634749|ref|NP_039041.1| ORF FPV079 Putative elongation factor [Fowlpox virus] (225 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150491|ref|NP_150486.1| LSDV051 putative transcriptional el... 99 1e-023 >gi|15150491|ref|NP_150486.1| LSDV051 putative transcriptional elongation factor [lumpy skin disease virus] Length = 222 Score = 98.6 bits (244), Expect = 1e-023 Identities = 64/223 (28%), Positives = 122/223 (54%), Gaps = 11/223 (4%) Query: 1 MSFRTLISYNLLKYLDSGDEAYMEKFISLCNSFNVDRVKVLTKYYNSKNTKLISKALNCD 60 M FR LI ++L K++ + +E ++ +SLC F+VD +++ + + K K ++ + + Sbjct: 1 MPFRDLILFHLSKFILTKNEESIKTTLSLCRGFDVDLEELMLSFLSKKYLKKLTN-IEYN 59 Query: 61 TYLKEIELSYPDNILKELVTIKLGKFTKTIKRSYKLPXXXXXXXXXXXXXXKY-NADNNT 119 L E+ +S+P++I+ EL+ ++L KF K IK S KL + ++ Sbjct: 60 NLLPELTISFPNDIVNELIKLRLYKFYKIIKPSLKLKNTMKGIVFIKNRNVYILHTNDEL 119 Query: 120 IAYSKLKYIPSIYRYT-EYPDGIKTEDIPKESIVLIFGKDYLDYFTYMLAKKVLSNKDIK 178 I + +Y P IY Y + PD + S +++ G D + ++TY++ K +++N+ + Sbjct: 120 IDFLFKEYDPYIYTYEIDKPDNLSG------SKIILCGYDKVTFYTYLITK-IVTNQTVD 172 Query: 179 IKVTDQCIDHLLNESNTDMLDTVFSNKPNNIISSTLNDIYLSL 221 I VTD+CI+ LL N +L +F+N N++I+ L I+ S+ Sbjct: 173 IVVTDKCIELLLQPQNKQLLKDLFNNS-NDMINKILKKIFYSV 214 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,057 Number of Sequences: 156 Number of extensions: 1896 Number of successful extensions: 14 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 1 length of query: 225 length of database: 48,119 effective HSP length: 59 effective length of query: 166 effective length of database: 38,915 effective search space: 6459890 effective search space used: 6459890 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634748|ref|NP_039042.1| ORF FPV078 [Fowlpox virus] (103 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,441 Number of Sequences: 156 Number of extensions: 559 Number of successful extensions: 5 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 103 length of database: 48,119 effective HSP length: 51 effective length of query: 52 effective length of database: 40,163 effective search space: 2088476 effective search space used: 2088476 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634750|ref|NP_039043.1| ORF FPV080 Transforming growth factor-beta [Fowlpox virus] (363 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.139 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,837 Number of Sequences: 156 Number of extensions: 2907 Number of successful extensions: 14 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 363 length of database: 48,119 effective HSP length: 63 effective length of query: 300 effective length of database: 38,291 effective search space: 11487300 effective search space used: 11487300 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634751|ref|NP_039044.1| ORF FPV081 Metalloprotease [Fowlpox virus] (626 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150489|ref|NP_150484.1| LSDV050 putative metalloprotease [l... 492 e-141 >gi|15150489|ref|NP_150484.1| LSDV050 putative metalloprotease [lumpy skin disease virus] Length = 596 Score = 492 bits (1267), Expect = e-141 Identities = 260/625 (41%), Positives = 392/625 (62%), Gaps = 34/625 (5%) Query: 1 MIQLNNGIRIFVNHSMKKDIYIGISDFGFEKDINDGILGIAHLLEHILISFDNKYFNANA 60 MI L+NG+RIF++ M KDIY+GI+ FGFE DI + I+GIAHLLEHILI+FD F ANA Sbjct: 1 MIVLSNGVRIFIDELMNKDIYLGIASFGFENDIGN-IIGIAHLLEHILITFDPSKFVANA 59 Query: 61 STSRTYMSFWCVALQ-KRHYEDAIRTAISWFFDKKYILKTDFSRIVLENYITELENEYYY 119 ST+R+YMSFWC +++ K DA+ T ISWFFD+ I K FS ++++I ELENEYY+ Sbjct: 60 STARSYMSFWCRSIKGKSKTIDAVETLISWFFDENKI-KDTFSISKIKDHIKELENEYYF 118 Query: 120 RTEMYHCMDVLAYLYGGDLYNGGRITMLERLPEIRNMLSNRMKFLSGKNIVIFVKRXXXX 179 R E++HCMD L++L GDLYNGGRI+ML+ + I +MLS+RM + G N+VIFVK Sbjct: 119 RNEIFHCMDALSFLANGDLYNGGRISMLQNINNIDDMLSSRMHRIIGPNVVIFVKALDEY 178 Query: 180 XXXXXXXXFGSIPKYXXXXXXXXXXXXARRKIIMMPCPFYTLLIQVDNTMNNLLAIICLV 239 FG +P + K +MMP PFYT+++ + T++N+L++I L Sbjct: 179 TLSLLSKTFGKLPT-CPLTIPYNNLPTIKGKFVMMPSPFYTVMVNIKPTLDNILSMISLY 237 Query: 240 ENYNLIDYETISDKLYVCISFANEDQYEYLLYNIKDMDFN-INRIELDLGEDYIMNLYIN 298 E Y+LIDYETI D+LY+ ISF NED +E + I +DF I + G+D++MN+Y++ Sbjct: 238 EMYHLIDYETIGDQLYISISFINEDDFEKFIKGIYIIDFEAYKNITFNYGDDFLMNIYLS 297 Query: 299 FPWLKNDIFEYIHTMNTKSAMLLADLKKNMHNSILEHKFMIIYPSFTKLLYNITDKQNHG 358 FPW+++DI++YI +N +++L L+ N++NSI ++ IYP+F+ +++N D Q H Sbjct: 298 FPWIQHDIYDYITEINCNISIILKSLEDNIYNSIASGNYVAIYPNFSNVIFNKNDSQMHK 357 Query: 359 ILVVGDVSFTPEKDPSMHHSNKENNNNYSKTVTKRKSKYVMYRKTPTTNNIVIDYTDSSF 418 I+V M ++N N+ Y+ T TK + K + K + N I I Y D F Sbjct: 358 IIV-------------MDNNNFSINDIYNNTNTKSRIKLM---KKQSQNEIYIKYDDVEF 401 Query: 419 FDYATFYHVMKSKYEKTNLFSRLKTSTGMCYKHCFDNDDLNELINSDTFIRYNSSKPAVL 478 Y K+K +K N G+ H F ++D+ ++ S+TF++Y+ SKPA + Sbjct: 402 ISYVNLALGFKNKIKKKN--------DGVQINHQFSSEDIKNILESETFLKYSKSKPATM 453 Query: 479 YQYILLAYFVTERDIKELVDYKDAIELDMKYYSKNKILFGKNTRYDIRTKSMFVCGLIKG 538 YQY+LL++FV+ I++++ ++++ +K++ KNKI+FGK ++Y I+T S FVCGL+KG Sbjct: 454 YQYLLLSFFVSGNSIEDILLNRESVLKPVKHF-KNKIVFGKKSKYHIKTFSSFVCGLVKG 512 Query: 539 RKLSEKVITDYMWKLKSLGLIYYLTSIKLGISNTFYIFAFTIFPEKVYNFFVGLKEITNR 598 ++ + +T+ MW LK GLIY L KL + +Y+F FTI+P V + N Sbjct: 513 INITNESLTNMMWVLKRKGLIYSLDFTKLD-KHLYYVFMFTIYPNSVVKYITTENIFKNH 571 Query: 599 CLIVSNKNTKIEEDDYSSLNKQIVI 623 CL++S K +D+SS+ K IVI Sbjct: 572 CLVISEKGI---VEDFSSMKKDIVI 593 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.140 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,503 Number of Sequences: 156 Number of extensions: 5529 Number of successful extensions: 37 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 1 length of query: 626 length of database: 48,119 effective HSP length: 67 effective length of query: 559 effective length of database: 37,667 effective search space: 21055853 effective search space used: 21055853 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634752|ref|NP_039045.1| ORF FPV082 RNA helicase/NPH-II [Fowlpox virus] (682 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150488|ref|NP_150483.1| LSDV049 putative RNA helicase [lump... 562 e-163 >gi|15150488|ref|NP_150483.1| LSDV049 putative RNA helicase [lumpy skin disease virus] Length = 676 Score = 562 bits (1449), Expect = e-163 Identities = 305/675 (45%), Positives = 423/675 (62%), Gaps = 12/675 (1%) Query: 8 SIYAFSNMYDIFPRKYSQKELEEYHRKNPLFFSYTIFPVIKHRWSKAYICFQNNVYMLNI 67 +IY F N ++FP +YSQ E E FS+ IFP+IKHRW K+Y+ N Y L+ Sbjct: 6 NIYYFPNCVNLFPYQYSQNEFENMSNDEKKNFSFAIFPLIKHRWKKSYVVKDNKTYKLSN 65 Query: 68 ELDTSKPYDRVPIQHLIDIRPISTDIKKEIYKISDKTFITFECYSYLKCKGYNSIYDITL 127 E++ K +V ++ I P D + Y I++ I+FECYSYL +++I+ Sbjct: 66 EVN--KTLKKVTNVNIPSIYPTKIDGASKEYTINNIK-ISFECYSYLNYSKFDNIHSFDE 122 Query: 128 DDKRGLLSAGNILSIFSSNKQMPEKSSIGILKNPKPFTVIKFKSLSLITQLQIFELLRKR 187 RGLL GN L IFS+N S+IGI N +PF IK SL +Q +IF+ Sbjct: 123 YILRGLLEGGNKLKIFSNNIGSAN-STIGIFNNTEPFFKIKLASLQPKSQQEIFKSWISH 181 Query: 188 KQIVVTGSTGIGKTSQLPKVIMWYNYLFGGWDNLDRVRFDYISRPIVLSLPRVALVKSNG 247 K I++TG TG+GKTSQ+PK+I+W+NYLFGG+ NL + YI +PIVLSLPR+ LVK + Sbjct: 182 KPIILTGGTGVGKTSQVPKLILWFNYLFGGFKNLSN-DYTYIEKPIVLSLPRITLVKLHS 240 Query: 248 INFLQSLGFSDFEGSPVELRYGGKTE---HTTRQHDGIVLSTNKLTSYSLSNYNIIIVDE 304 N L SLGF SP+ L++G T+ + +++ GIV ST+++T L +Y II+DE Sbjct: 241 KNLLNSLGFKSLNESPISLKFGSITKDLINLNQRNYGIVFSTHRITLSKLFDYGTIILDE 300 Query: 305 IHEHDRIADIIISVLRKNIDTIHSLVLMSATLEDDRDRLQEFLPDVEFYHIEGPVLYSIK 364 +HEHD+I DIIISV RK I+ I SL LM+ATLEDD DR++ F F HI G L++I Sbjct: 301 VHEHDQIGDIIISVTRKYINKIESLFLMTATLEDDIDRIKVFFESPIFVHIPGSTLFNIS 360 Query: 365 EIYVKNKYSYDSK-AYTEEEKKNISTTLNWCRPRNGMCGILFLASVSQCISYKKYLEKSN 423 E+Y+KN + +K Y EEEKKN+ + P GI+F++S++QC +YKK+L K + Sbjct: 361 EVYIKNSVNIKNKFKYIEEEKKNMLNAIKKYTPPKNSSGIVFVSSIAQCENYKKFLSK-H 419 Query: 424 SDMDFIIIHGKIPDITEVLNAVQRPGRERPCILVSTPYLESSITIRTATHVYDTGRVYVP 483 D IIHGK+ +I ++L+ + I++STPYLESS+TI TH+YD+GRVY+P Sbjct: 420 IPYDIHIIHGKVKNIEDILSDIY--STNNTSIIISTPYLESSVTINNVTHIYDSGRVYIP 477 Query: 484 KPFGGDQLFISKSMMTQRKGRVGRVSKGIYVYFYDMCLLKPIKSIDHEFLYEYIVYAKKF 543 +P+GG ++FISKSM QRKGRVGRV G Y+YFYD+ LKPIK ID EFL+ YI+Y K F Sbjct: 478 EPYGGKEIFISKSMREQRKGRVGRVKPGTYIYFYDIAYLKPIKRIDSEFLHNYILYGKIF 537 Query: 544 KLSLPNDLLVIPSDKDMLKKSEEYIKSFNISFDRLFEIYVNYFVNMVEYVKIYNKGGKKA 603 LSLPNDL V PS+ D L K YI SF IS ++ I +Y+VN++EY KIY+KGG A Sbjct: 538 NLSLPNDLFVQPSNLDFLNKVSTYIDSFCISDEKWTFIMSSYYVNILEYAKIYSKGGNDA 597 Query: 604 ENLDMFERNDILTGETLKDIKNLQLLVKINTTTRRKKMYCYKGEILFGPYMNTVIRLSSK 663 LD+FER ++L + IK L + KI R K+Y +++FG Y + Sbjct: 598 CALDIFERENVLNDDAFNAIKLLNMKAKIIKHRRYNKLYVLTCKLMFGVYFGKTFNIIHN 657 Query: 664 QLYRNYVYMLTERSF 678 + Y+ M+T+ +F Sbjct: 658 RPLFGYITMITDSTF 672 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.140 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,677 Number of Sequences: 156 Number of extensions: 4879 Number of successful extensions: 30 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 1 length of query: 682 length of database: 48,119 effective HSP length: 68 effective length of query: 614 effective length of database: 37,511 effective search space: 23031754 effective search space used: 23031754 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634753|ref|NP_039046.1| ORF FPV083 Virion core protein [Fowlpox virus] (421 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150487|ref|NP_150482.1| LSDV048 putative virion core protei... 484 e-139 >gi|15150487|ref|NP_150482.1| LSDV048 putative virion core protein [lumpy skin disease virus] Length = 433 Score = 484 bits (1245), Expect = e-139 Identities = 237/432 (54%), Positives = 307/432 (70%), Gaps = 12/432 (2%) Query: 1 MDKYTELVINKIPELGFVNLLSHIYQTVGLCSSIDISKFKTNCNGYVVERFDKSETAGKV 60 MD+YT+LV+NKIPELGF NLLS+IY GLC ++DISKF TNCNGYVVE++DKS TAGK Sbjct: 1 MDRYTDLVVNKIPELGFTNLLSYIYSESGLCFNLDISKFLTNCNGYVVEKYDKSVTAGKE 60 Query: 61 SCVPISILMELVERGMLSKP---------DNSKSQLEVKTDLVNELISKNNGFEDIMTIP 111 SC+P+ +L+ELV+ L +N++ +L +K LVN+L +K ++I P Sbjct: 61 SCIPLFLLLELVDLKYLENNYQKDKDNVINNNEYELSLKKYLVNQLKNKYKNIQEIFNFP 120 Query: 112 TSIPMKYFFKPVLKEKVSKAIDFSVMDIKGDDVSRMGIRYGENDKVVKIKIAPERDAWMT 171 TSIP++YFFKP LKEK+SKAIDFS MDIK DD+S+ G GEN K+VKIKI P++ AWM+ Sbjct: 121 TSIPIEYFFKPKLKEKISKAIDFSQMDIKVDDLSKRGFLAGENSKIVKIKIEPDKRAWMS 180 Query: 172 NTSIHQFLIPMCYGTEVIYIGQFNFNFMNRHAIYEKSSVF-NKNTEVFKLKDRIRDNRSS 230 N SI + YGT+V Y+GQ++ F+N IYEK F NK+ + LKD+IR ++ Sbjct: 181 NKSIQSLVSQFSYGTDVDYLGQYDMRFLNNVPIYEKFDFFINKHILSYILKDKIRKSKY- 239 Query: 231 RFIMFGFCYLHHWKCAIYDKNRDFICFYDSGGNNPNEFNHYRNFFFYSNSDGLNRNSYLS 290 R+ MFGFCYL HWKC I+DK + +CFYDSGGN P+EF+HY NF+FYS SDG N N Sbjct: 240 RYAMFGFCYLSHWKCVIFDKEKLVVCFYDSGGNIPSEFHHYDNFYFYSFSDGFNTNDKDD 299 Query: 291 S-LANENADIDILFNFFIDNYGVTAGCINVEVNQLLESECGMFTCLFMAVCCLNPPKGFK 349 S L N N D+D+LF FF ++G GCINVEVNQLLESECGMF +FM +C PPKGFK Sbjct: 300 SVLENGNGDVDVLFRFFKYSFGAKVGCINVEVNQLLESECGMFISIFMIICTQTPPKGFK 359 Query: 350 GIRKIYTYFKFLADKKVTMLKSILFNVGKMEFTIKEVDGEGMQQYKKMEKWCANTINILA 409 IRKIYT+FKFLADKK+T+ KSILFN+G++ + ++ +++YK+ME W I L Sbjct: 360 SIRKIYTFFKFLADKKMTLFKSILFNIGEINIETEYLECPALKEYKRMEAWTKKAITALY 419 Query: 410 NKITSRVEDIIN 421 NKI + I+N Sbjct: 420 NKIVIKANKIVN 431 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.140 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,363 Number of Sequences: 156 Number of extensions: 3304 Number of successful extensions: 19 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 1 length of query: 421 length of database: 48,119 effective HSP length: 64 effective length of query: 357 effective length of database: 38,135 effective search space: 13614195 effective search space used: 13614195 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634754|ref|NP_039047.1| ORF FPV084 Fowlpox PIR:E48563, vaccinia I6L and Molluscum contagiosum virus MC048L homolog, similar to canarypox virus virus GB:D86731 [Fowlpox virus] (390 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150486|ref|NP_150481.1| LSDV047 hypothetical protein [lumpy... 187 3e-050 >gi|15150486|ref|NP_150481.1| LSDV047 hypothetical protein [lumpy skin disease virus] Length = 394 Score = 187 bits (476), Expect = 3e-050 Identities = 118/373 (31%), Positives = 193/373 (51%), Gaps = 21/373 (5%) Query: 1 MDNFLKQISSNVKKPIAELEDP-DAVIKFHYMNISFNFPDLYYCNNNLFDKPENNLLDIS 59 M+NF+K +S + KP +L D IK ISFNF + YY N LF+KP N+L D++ Sbjct: 1 MNNFIKHVSYKILKPNKKLSKKLDDEIKLKECIISFNFENFYYSNEILFNKPTNSLDDVN 60 Query: 60 KSLLMLNSFSHECFILQDILRVIRRYGHVYDVYFLPIGWLVGHG-----EAPKYHASIKL 114 KS L++ SF +E +++ ++ ++++ ++ D +F+PIGW+VG+ H IK+ Sbjct: 61 KSWLIMESFKYEKYVIMGLINILKKKSYITDFFFIPIGWIVGNNINNDDNINNNHVVIKI 120 Query: 115 IRSNTQ--EIIDGIIRRQLSQYGIQGDNLSIFVDSSNEVAINRHSIIGARQLN--PICVV 170 N + + + I+ LS Y I + + E+ +I+ + N P V+ Sbjct: 121 TIENNKPFQPLSNKIKDFLSHYDIFD---LLIIQKEKEL-----NILSFKTPNNFPSVVI 172 Query: 171 SFYPFDPEHKVFFVIYVGRYKDKYCGISYVADREDMYKVINRIYPYVSCFYLVSDGIINF 230 S +PFD + V++ G + D YCG+SY+ +++++ VI + P S ++SD I F Sbjct: 173 SLFPFDVT-SIIIVLFFGIFDDSYCGLSYITNKDNLNYVIEVLKPISSEINILSDEITRF 231 Query: 231 HTTPVANHTRN-IKPLPVNYCNTLCEIVYDFEYLKFEQGVMSIPV-FMPFVPKQFVSIIN 288 + + N+ N K P +CE + FE KFE+ I F+PK+ +S+I+ Sbjct: 232 VSIKLFNNELNKNKKFPEEKIFFICEFIKIFEKTKFEEPKSVIQTNITTFIPKKMISLID 291 Query: 289 LPDDILITCTASSNIEYITHIDNXXXXXXXXXXXXXXXXGTIMQGTFKKVNIIRHKKYTY 348 LP ++ I + + I+YITHI++ GTFKK NII YTY Sbjct: 292 LPSNVEIRTLSKNGIDYITHINDKKLSTILIITKDNFLKNVSFSGTFKKENIIWKGYYTY 351 Query: 349 TITYSSFDCPKLE 361 I S+FD PKL+ Sbjct: 352 RIIESTFDVPKLK 364 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.325 0.142 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,621 Number of Sequences: 156 Number of extensions: 2836 Number of successful extensions: 16 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 1 length of query: 390 length of database: 48,119 effective HSP length: 64 effective length of query: 326 effective length of database: 38,135 effective search space: 12432010 effective search space used: 12432010 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634755|ref|NP_039048.1| ORF FPV085 [Fowlpox virus] (81 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.334 0.146 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5434 Number of Sequences: 156 Number of extensions: 156 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 81 length of database: 48,119 effective HSP length: 48 effective length of query: 33 effective length of database: 40,631 effective search space: 1340823 effective search space used: 1340823 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 84 (37.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634756|ref|NP_039049.1| ORF FPV086 Thymidine kinase [Fowlpox virus] (183 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150505|ref|NP_150500.1| LSDV066 thymidine kinase [lumpy ski... 187 2e-050 >gi|15150505|ref|NP_150500.1| LSDV066 thymidine kinase [lumpy skin disease virus] Length = 177 Score = 187 bits (475), Expect = 2e-050 Identities = 90/181 (49%), Positives = 132/181 (72%), Gaps = 6/181 (3%) Query: 1 MSSGSIHVITGPMFSGKTSELVRRIKRFMLSNFKCIIIKHCGDNRYNEDDINKVYTHDLL 60 M G IH+I GPMFSGK++EL+R +KR+ ++ +KC ++K+ D RY N VYTHD Sbjct: 1 MDYGYIHLIIGPMFSGKSTELIRIVKRYQIAQYKCCVVKYLKDIRYG----NSVYTHDNN 56 Query: 61 FMEATASSNLSVLVPTLLNDGVQVIGIDEAQFFLDIVEFSESMANLGKTVIVAALNGDFK 120 + A +++ L +V ++N +IGIDE QFF DIV FSE+MAN+GK +I+AAL+ F+ Sbjct: 57 HVSAISTTLLYDVVDKIMN--FDIIGIDEGQFFKDIVSFSENMANMGKIIIIAALDSTFQ 114 Query: 121 RELFGNVYKLLSLAETVSSLTAICVKCYCDASFSKRVTENKEVMDIGGKDKYIAVCRKCF 180 R+ F ++ KL+ L+E V+ L A+C++CY DA+FSKR+T+ KE+ IGGK+KY +VCRKC+ Sbjct: 115 RKEFNDILKLIPLSEKVTKLNAVCMECYKDAAFSKRITKEKEIELIGGKEKYKSVCRKCY 174 Query: 181 F 181 F Sbjct: 175 F 175 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.138 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,689 Number of Sequences: 156 Number of extensions: 1055 Number of successful extensions: 8 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 183 length of database: 48,119 effective HSP length: 57 effective length of query: 126 effective length of database: 39,227 effective search space: 4942602 effective search space used: 4942602 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634757|ref|NP_039050.1| ORF FPV087 HT motif gene family protein [Fowlpox virus] (91 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.329 0.143 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,708 Number of Sequences: 156 Number of extensions: 684 Number of successful extensions: 4 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 91 length of database: 48,119 effective HSP length: 49 effective length of query: 42 effective length of database: 40,475 effective search space: 1699950 effective search space used: 1699950 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 85 (37.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634758|ref|NP_039051.1| ORF FPV088 DNA-binding phosphoprotein [Fowlpox virus] (290 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150484|ref|NP_150479.1| LSDV045 putative DNA-binding phosph... 139 7e-036 >gi|15150484|ref|NP_150479.1| LSDV045 putative DNA-binding phosphoprotein [lumpy skin disease virus] Length = 276 Score = 139 bits (351), Expect = 7e-036 Identities = 85/234 (36%), Positives = 134/234 (56%), Gaps = 15/234 (6%) Query: 8 EKMNMSKKQVKTQSKCNNNASRFTCLDAVQYAKALCTKDTKIVKSVKLTPSHHNLCSNIS 67 +K + KK+ S ++ C + ++Y K L K V+SV L+ S + CS+I Sbjct: 6 QKSVVVKKETPGMSTQSDEKKYSKCHEVIEYLKTLSKSKEKCVESVILSQSQYPSCSSIM 65 Query: 68 VTLEPKYNEKLVSPFILVEGEGKIYQTRSDNFSREESYFLKIRPSVISPILHQMMECIYS 127 + L + K+ S +I VEGE KIY+ + D E YFLKI+ S SPIL+Q++E IY+ Sbjct: 66 INLTEALSSKMTSTYIAVEGEAKIYKNKKD-VKLGEQYFLKIKLSATSPILYQLLENIYT 124 Query: 128 DL--GYLDPE-------NTMDEKTFKDGYIYINKNKMSSTIIEY-TRNNKEVAGRKTLSS 177 ++ G P N +DEKT G +YI NKM+ IIEY N+ + +++ Sbjct: 125 NIKEGKKVPPSLVNISINDLDEKTLNKGCLYI--NKMNGAIIEYKVPGNRSIV--QSMIE 180 Query: 178 EVEHLSKKDPQMVKAVLVASIFFENAVMCKISFSLKKLIMEKVCRKTLIDTNGE 231 E+E LSK+D QM KA++V + ++N+ K++F+LKKLIME+ ++D +G+ Sbjct: 181 ELESLSKRDKQMAKAIIVPIVLYKNSETIKVTFALKKLIMERDFSANIVDVDGK 234 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.314 0.131 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,163 Number of Sequences: 156 Number of extensions: 1727 Number of successful extensions: 17 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 1 length of query: 290 length of database: 48,119 effective HSP length: 61 effective length of query: 229 effective length of database: 38,603 effective search space: 8840087 effective search space used: 8840087 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634759|ref|NP_039052.1| ORF FPV089 [Fowlpox virus] (65 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150483|ref|NP_150478.1| LSDV044 hypothetical protein [lumpy... 40 1e-006 >gi|15150483|ref|NP_150478.1| LSDV044 hypothetical protein [lumpy skin disease virus] Length = 72 Score = 39.7 bits (91), Expect = 1e-006 Identities = 15/31 (48%), Positives = 24/31 (77%) Query: 1 MEKLFTGTYGVFLESNDSDFEDFINTIMTVL 31 M+KL++ +GVF+ S+D DF +FIN + +VL Sbjct: 1 MDKLYSAIFGVFMSSSDDDFNNFINVVKSVL 31 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5799 Number of Sequences: 156 Number of extensions: 142 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1 length of query: 65 length of database: 48,119 effective HSP length: 41 effective length of query: 24 effective length of database: 41,723 effective search space: 1001352 effective search space used: 1001352 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634760|ref|NP_039053.1| ORF FPV090 Virion protein [Fowlpox virus] (311 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150482|ref|NP_150477.1| LSDV043 putative DNA-binding virion... 341 2e-096 >gi|15150482|ref|NP_150477.1| LSDV043 putative DNA-binding virion core protein [lumpy skin disease virus] Length = 314 Score = 341 bits (874), Expect = 2e-096 Identities = 173/304 (56%), Positives = 234/304 (76%), Gaps = 1/304 (0%) Query: 5 DQLVLNSISAKALKSYLTTKIAEAIDELAAKKNSPKKKAQTKKPENRIPLDLINKNFVSK 64 DQLVLNSISA+ALK + T+KI + +DEL KK KKK+ K+ E RIP+DLI ++FV + Sbjct: 6 DQLVLNSISARALKIFFTSKINDIVDELVTKKYPQKKKSLAKRIETRIPIDLIREDFVKR 65 Query: 65 FGLKGYKDGVLNSLICSLVENNYF-ENGKLKRGKHDELVLLDIEKEILARIDENSSLNID 123 F L YK+G+L++LI SLVENNYF ++GKL +ELV+ DIEK+IL +I ++SSL ID Sbjct: 66 FKLDNYKNGILSTLINSLVENNYFSKDGKLNDDAINELVINDIEKKILEKISKSSSLYID 125 Query: 124 VLDVKVLANRLRTNADRFEFKGHTYYLEQNKTEDIINQLIKNSAISMDMKNTIKDTFYMI 183 V DVK+L++RL+ A F F + Y LE +K E++INQL KN+ I++D K ++KD Y++ Sbjct: 126 VSDVKILSSRLKKPASFFIFNKNRYVLENDKIEELINQLAKNNDITLDEKYSVKDNVYIL 185 Query: 184 SDELLDVFKNRLFKCPQVKDNIISRARLYEYFIKATKPDDSKIYVILKDDNIAKILNIET 243 SDELL+V K+RLFKCPQVKDN+IS+ RLY+YF + TK ++SKIYVILKD IA IL I+T Sbjct: 186 SDELLEVLKSRLFKCPQVKDNLISKTRLYDYFNRITKQEESKIYVILKDKKIADILGIDT 245 Query: 244 IVIDHFIYTKHSLLVSSISNQIDKYSKKFNDQFYSSISEYIKDNEKINLSKVIEYLTIST 303 I I FIYTKHS+L++SIS+ +D+YSKKF + FY ISE++KDNEK+N+SKV+E L Sbjct: 246 IKIGSFIYTKHSMLMNSISSNVDRYSKKFQESFYEKISEFVKDNEKVNVSKVVECLITPN 305 Query: 304 VKIE 307 + +E Sbjct: 306 IVLE 309 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.316 0.135 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,093 Number of Sequences: 156 Number of extensions: 2667 Number of successful extensions: 17 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 1 length of query: 311 length of database: 48,119 effective HSP length: 62 effective length of query: 249 effective length of database: 38,447 effective search space: 9573303 effective search space used: 9573303 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634761|ref|NP_039054.1| ORF FPV091 [Fowlpox virus] (656 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150481|ref|NP_150476.1| LSDV042 hypothetical protein [lumpy... 144 6e-037 gi|15150472|ref|NP_150467.1| LSDV033 hypothetical protein [lumpy... 46 3e-007 >gi|15150481|ref|NP_150476.1| LSDV042 hypothetical protein [lumpy skin disease virus] Length = 684 Score = 144 bits (364), Expect = 6e-037 Identities = 156/707 (22%), Positives = 312/707 (44%), Gaps = 97/707 (13%) Query: 4 LYSKKVRKSIRKFIRSGLNFDLLHEKHGRRLIINNIFVK----------LPPKYYNFAKG 53 +Y K+ R ++ K I S + + R + +N+FV LP YN A Sbjct: 6 IYPKRARDALSKIISSSITIE--------RFLNSNVFVDTILEFGFHGILPVSLYNRAID 57 Query: 54 LDLNNILAFDSEIIQLNDLKKLIMRLPLLPDCFTDVISCHKKYLLSDA---AIVNKLINS 110 D+NN+ F E I+L+DL L++ + + + ++K L++ ++ +I + Sbjct: 58 FDINNLKYFPVESIRLDDLINLLLESNTIDSKLHNAVLTYRKDLITSRNGDKLIKLMIEN 117 Query: 111 NMVSLSDIRNIIDNRIKTPVEIALLNSSLVIPGTPFSLDEVKYIFENTSAENVKELYKRI 170 +++++ DI I+ I I LN LV S DE+ + + T + K LYK + Sbjct: 118 DLLNIDDINYIVSECIVPNSYILKLNPMLVSNAMILSKDELIEVIKFTPSYTWKYLYKHL 177 Query: 171 ETPIHSVLYMEEKFSISPVHSSLYQVTDVXXXXXXXXXXXXXXXXXXVNGIVKSKKDFIE 230 + ++LY+ + ++ P + SL ++ ++ V+ +K FIE Sbjct: 178 SIELDTLLYISDTLNVPPTNISLLKLNNMKKAIEIIKKYPNDDIITYVSSDIKLNLPFIE 237 Query: 231 SIITIIKDRLPDISPCLNKWISTQLPPDKLRDEFGIYFYALFEWIDIPLYIDKYLFLNIT 290 I I+ D P + +N ++ + + ++L +GI A+F + ++ L+ + I+ Sbjct: 238 KIHEIVNDNFPRMLTHMNDFLFSTVSKEELIKRYGIKSVAMFSF-NLELHPE-----TIS 291 Query: 291 EDETKFICRYIDIYKKKSELFVNAFRWHLYYCNSMY-PQKVFPVITYKQDSK---EKYVV 346 +D+ FI I+IY+ K + F + + Y +Y P + ++K+++ E+ + Sbjct: 292 DDDKNFILENINIYESKCKNFFDFKKKIFYNQLKLYKPPSIIKSPSFKKNNNIDDEEKTI 351 Query: 347 KESFKYLDNKQT------MKVLLNDFKYNYAIGKYILDSSSSNEVKMDAL---------- 390 + Y+DN + ++ L++ FK+N I + I S+SS + K+ L Sbjct: 352 DDVLNYIDNSKRKILITEVEFLISPFKFNPCIVRNICLSNSSIKTKLLLLKIIKKWKYSY 411 Query: 391 NMLQKQVVCLENAK------CFDLGNLYSVLIKFQYHPV-DYVMYSDKL----------- 432 N+ K + +++ K FD+ N + +I +Y + D + + L Sbjct: 412 NLTNKFLFGIQSFKKINDIITFDMTNYITSVILCKYKKIYDRIKTLENLVNMNLICNCEN 471 Query: 433 -----LDYMSKNSTFDN--NDIGLLTLASFLFSTAKKGIIDINFLNTNSLWSPLMYLIDD 485 +++ SKN +D ++ L + A G+++ + + W L+ L++ Sbjct: 472 CNNSKINHKSKNIYLGKKTSDDDIINCLYDLVNYAIHGLVNPSLIGIKG-WGALICLLNG 530 Query: 486 SCK--VDFTRFMMATKNIKADNINYLKNKDENINNNFEHIDNIDIYKLLDYSRIKLYGIN 543 + K +D + N + N + L + +N + I L + + +N Sbjct: 531 TKKNKIDINIYNTMDFNFVSTNGDILLSGSYLVNK----LIPITKTPLSSFVPFTCFSLN 586 Query: 544 --FIKKVILANVIFEYIFTLI---IIRYQKTSYNLRSFLEMLLYRCLKGFGISPKLYKNV 598 F K VIL N+I EY+ + + II Q+ + NL+ ++ ++ CL+ G V Sbjct: 587 DYFSKTVILFNIILEYMTSFVLYRIITIQRYN-NLKEYISKVVNTCLEASG--------V 637 Query: 599 YVNEMNICCELENLINNYVV----PFKTYGILMKLLITIFNNLNGIS 641 + ++NI +E IN V+ P + I +K++ TI +NGIS Sbjct: 638 FFAQINISNIIETEINEIVINGSFPVRLLNIFLKVITTILEEINGIS 684 >gi|15150472|ref|NP_150467.1| LSDV033 hypothetical protein [lumpy skin disease virus] Length = 735 Score = 46.2 bits (108), Expect = 3e-007 Identities = 115/567 (20%), Positives = 221/567 (38%), Gaps = 112/567 (19%) Query: 33 RLIINNIFVK-LPPKYYNFAKGLDLNNILAFDSEIIQLNDLKKLIMRLPLLPDCFTDVIS 91 +++IN I LP K+Y + + I F + + DL L+ + + + + I+ Sbjct: 34 KMLINGINPNNLPQKWYFRIRKEFPSKIYLFKPKTVPFVDLIALVYNQKNI-ELYREHIN 92 Query: 92 CHKKYLLSDAA--IVNKLINSNMVSLSDIRNIIDNRIKTPVEIAL--LNSSLVIPGTPFS 147 HKK ++ + I+ K I +++ DI +I VE L +NS S Sbjct: 93 FHKKDIIKKCSKRIILKCIQYMVIADDDIFCLIHRFSNIEVENILTKINSE--------S 144 Query: 148 LDEVKYIFENTSAENV--------KELYKRIETPIHSVLYMEEKFSISPVHSSLYQVTDV 199 + + Y+F + AE + LY+ ++ M K+ I P + + + Sbjct: 145 IKNINYLFSESLAEKIFINDFSLCDSLYQHQSFESKFLMDMLYKYGIIPNNDGILSAISI 204 Query: 200 XXXXXXXXXXXXXXXXXXVNGIVKSKKDFIESIITIIKDRLPDISPCLNKWISTQLPPDK 259 +K KD + + + ++L D + K+I T++ + Sbjct: 205 ELILDVLQS-------------IKFHKDILTFLDMLTFEQLKDDR--IKKFIITKIKNGE 249 Query: 260 L--------------RDEFGIYFYALFEWIDIPLYIDKYLFLNITEDETKFICRYIDIYK 305 + +DE G+Y+ F+ D + KY +T+D K C+YID Y Sbjct: 250 VDQYKTYAIEFLYDKKDELGLYYSFFFK--DPLIDFTKY---ELTKDFLKICCKYIDNYD 304 Query: 306 KKSELFVNAFRWHLYYCNSMYPQKVFPVITYKQDSKEKYVVKESFKYLDNKQTMKVLLND 365 Y N MY +I Y++++++ L + K+ LN Sbjct: 305 ---------------YNNKMY------II--------NYLIEKNYINLLSTIIDKIPLNI 335 Query: 366 FKYNYAIGKYILDSSSSNEVKMDALNMLQKQVVCLEN-----AKCFDLGNLYSVLIKFQY 420 I K + +S+ ++K ++ +VC+E + D ++ +L K Sbjct: 336 LTEELCI-KIVCESNIKVKIKDIPIHTSLVMIVCIEMGYEDLVELLDTIDINVLLEKNAN 394 Query: 421 HPVDYVMYSD------KLLDYMSKNSTFDNNDIGLLTLASFLFSTAKKGIIDINFLNTNS 474 DY +D KL+D + F ++ + L L T+ + +N ++N+ Sbjct: 395 LVSDYTFSTDWYNKNNKLIDIFVQKYGFCSHKMNKLMFEYPLNKTSTMYL--LNIFSSNN 452 Query: 475 LWSPLMYLIDDSCKVDFTRFMMATKNIKADNINYLKNKDENINNNFEHIDNIDIYKLLDY 534 + Y I S F ++ + ++ N+N++ K +I N I KL + Sbjct: 453 INKYFSYKIQPSL------FYLSCTHSES-NVNFILKKVSDIKN------LIPFKKLSNK 499 Query: 535 SRIKLYGINFIKKVILANVIFEYIFTL 561 + + +Y N IK +IL + I E T+ Sbjct: 500 NSMFIYDQNKIKSLILYSNIPEIDMTV 526 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.142 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,704 Number of Sequences: 156 Number of extensions: 6148 Number of successful extensions: 57 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 4 length of query: 656 length of database: 48,119 effective HSP length: 68 effective length of query: 588 effective length of database: 37,511 effective search space: 22056468 effective search space used: 22056468 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634762|ref|NP_039055.1| ORF FPV092 [Fowlpox virus] (131 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150480|ref|NP_150475.1| LSDV041 putative virion core protei... 102 3e-025 >gi|15150480|ref|NP_150475.1| LSDV041 putative virion core protein [lumpy skin disease virus] Length = 130 Score = 102 bits (255), Expect = 3e-025 Identities = 51/131 (38%), Positives = 85/131 (63%), Gaps = 1/131 (0%) Query: 1 MELVNILLESESERVKLYYDIPPKKSLRTKCEVDRAVKYFISVIKKYIKLKESTFYVVVK 60 MELVNI LES+ RVK+ + K V +++ FI +IK+YI +++STFY+ +K Sbjct: 1 MELVNIFLESDCGRVKIEVQNNTNECACKKSSVVKSIDTFIDIIKQYINVEKSTFYLAIK 60 Query: 61 DTTLFTYKYDKGELTPVDNTYYTFSKELASTDYSSSEITSICFTITDDMSISVKPKTGYI 120 +F +KYDKG+++ ++N ++TF+ EL + + ++IT I F +TD MS+ + PK G Sbjct: 61 HQDIFIFKYDKGKISQIENEFFTFNSELMFVN-NYNKITGIEFIVTDTMSMHIYPKVGLS 119 Query: 121 VKVRSDNSRYY 131 V S+N+++Y Sbjct: 120 VISSSNNNKFY 130 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.316 0.133 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,547 Number of Sequences: 156 Number of extensions: 920 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 131 length of database: 48,119 effective HSP length: 54 effective length of query: 77 effective length of database: 39,695 effective search space: 3056515 effective search space used: 3056515 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634763|ref|NP_039056.1| ORF FPV093 [Fowlpox virus] (94 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150479|ref|NP_150474.1| LSDV040 putative redox protein [lum... 115 3e-029 >gi|15150479|ref|NP_150474.1| LSDV040 putative redox protein [lumpy skin disease virus] Length = 95 Score = 115 bits (288), Expect = 3e-029 Identities = 51/95 (53%), Positives = 72/95 (75%), Gaps = 2/95 (2%) Query: 1 MDPRYWGSSFWIVIFIIITKFK--HDIETCKRHLYNICKALPCAECKDHALQAIQKNNIM 58 M+P++WG + W VIFI+ITK K ++E CK+H+Y I + LPC C+ HA++ I+KNN+M Sbjct: 1 MNPKHWGRAIWTVIFIVITKTKTHKNLELCKKHIYTIVETLPCPMCRIHAIREIEKNNVM 60 Query: 59 SSNDINYIYFFFISLYNNLVFNPERCIDIKKVKKL 93 SS+D+NYIYFFFISL+NNL + + ID+ KV L Sbjct: 61 SSDDLNYIYFFFISLFNNLASDEKYKIDLNKVLPL 95 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.331 0.144 0.474 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,787 Number of Sequences: 156 Number of extensions: 836 Number of successful extensions: 8 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 1 length of query: 94 length of database: 48,119 effective HSP length: 50 effective length of query: 44 effective length of database: 40,319 effective search space: 1774036 effective search space used: 1774036 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634764|ref|NP_039057.1| ORF FPV094 DNA polymerase [Fowlpox virus] (988 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150478|ref|NP_150473.1| LSDV039 DNA polymerase [lumpy skin ... 980 0.0 >gi|15150478|ref|NP_150473.1| LSDV039 DNA polymerase [lumpy skin disease virus] Length = 1010 Score = 980 bits (2533), Expect = 0.0 Identities = 510/1013 (50%), Positives = 681/1013 (66%), Gaps = 33/1013 (3%) Query: 1 MDIRCVNWFENKGETKYIYLKAINRESNVIFIRFNYYYHYVYDASKELEYKPNECID--L 58 M+I+C+NWFE+KG ++++LKA NR+S IF+RFN+Y++Y + P L Sbjct: 1 MEIKCINWFESKGNERFLFLKARNRQSETIFLRFNFYFYYAVTEDVYISLSPPAYSSDFL 60 Query: 59 GPFKIINIDEKLSTDIRYVEPRNYYTSELVLVKDLKRNREKQYLQEYLDITWFYLLNNIT 118 G +I+I E++S + VE + + ++ + KRN K ++E+L+++WF++ NNI+ Sbjct: 61 GNMNLIDISERVSNHVTDVEKKKTNVNVWLIKEPQKRNIPKAIMEEFLNVSWFFISNNIS 120 Query: 119 PDGCYKIDIEHLTPIKKDCYHCDDVSKVFIQEIPIFEVKFTYLLFDIECQFDKKFPSVFV 178 P+GCY I++E L I + CYHCD + F I F + +YL DIECQFDKKFPSVF Sbjct: 121 PEGCYSINVEKLKKINEQCYHCDCPKECFATPINRFNINRSYLFLDIECQFDKKFPSVFT 180 Query: 179 NPISHISCWIIDKVT-EYKFTLINTDILP--DKEPSIL--HHKDFSPKD-----RITYCT 228 NP+SHISC ID E+KFTLIN DIL DK+ + L ++K S D I C+ Sbjct: 181 NPVSHISCCYIDLTNLEFKFTLINEDILSNKDKKDATLKGYYKAKSVSDVDYTKEIIICS 240 Query: 229 EIVMLLIMKKILEHRFDFVITFNGNNFDIRYISGRLEILEKSFIYFSLPDATETVKLKIF 288 EI ML + KK+LE FD+V+TFNGNNFD+RYIS RLE+L I F PD E V L I+ Sbjct: 241 EITMLKVAKKLLELTFDYVVTFNGNNFDLRYISNRLELLTSGKIIFKSPDKKEHVHLCIY 300 Query: 289 ERFVTG----GTFTNKTYHINNNNGVMFFDLYAFIQKTERLDSYKLDSISKNIFNCNVAI 344 ER ++ G N TYH+NNNNG FFDLY +IQK+E+LDSYKLDSISKN F+C+V + Sbjct: 301 ERNLSSHKGVGGVANTTYHVNNNNGTTFFDLYTYIQKSEKLDSYKLDSISKNAFSCSVKL 360 Query: 345 KEIDDTILTLEATVKDNSKD---KLSIFSRVLETGNYITIGDNNVSKIVYKDINQDSFII 401 K +D +LT V DN+ D K+S FS VL TGNYITI D+ V KIV K + D F + Sbjct: 361 KSENDNLLTF---VGDNTTDDIGKISSFSEVLSTGNYITIVDD-VFKIVDKSVGNDKFQL 416 Query: 402 KVISNRDYEIGSVHN----ISFGKDDVDLKDMYKNYNLEIALDMERYCIHDACLCKYIWD 457 +++ + ++ N ISFGKDDV L DMYKNY+L +++M +YCIHDACLCKY+W+ Sbjct: 417 TILNKNNTLKKNIDNDIYTISFGKDDVSLSDMYKNYDLNTSIEMAKYCIHDACLCKYLWN 476 Query: 458 YYRVPSKINAASSTYLLPQSLALEYRASTLIKGPXXXXXXEERVIYTRKITKVRYPYIGG 517 YY + +KI+A + TY+LPQS+ EYRASTLIKGP +E++I +R K +Y Y GG Sbjct: 477 YYGIETKIDAGAFTYILPQSMVFEYRASTLIKGPLLNLLLDEKIILSRSEKKNKYHYEGG 536 Query: 518 KVFLPSQKTFENNVMIFDYNSLYPNVCIYGNLSPEKLVCILLNSNKLESEINMRTIKSKY 577 KVF P QK F NNV+IFDYNSLYPNVC++GNLSPE LV + + +N+LE+EIN + I+ KY Sbjct: 537 KVFAPKQKMFINNVLIFDYNSLYPNVCLFGNLSPETLVSVFVANNRLEAEINKQEIEKKY 596 Query: 578 PYPEYVCVSCESRLSDYYSEIIVYDRREKGIIPKLLEMFIGKRKEYKNLLKTASTTIEST 637 P P Y+ + CE R D SEI V+DR +GIIPKLL+ F+ +R YK K A+ + + + Sbjct: 597 PPPRYISIHCEPRCDDLISEIAVFDRNVEGIIPKLLKTFLTERARYKKKYKEATLSTDKS 656 Query: 638 LYDSLQYIYKIIANSVYGLMGFSNSTLYSYSSAKTCTTIGRNMITYLDSIMNGAVWENDK 697 +Y+S+QY YKIIANSVYGLMGF NS LYSYSSAK+CT IGR MI YL+S++NG+ EN K Sbjct: 657 IYNSMQYTYKIIANSVYGLMGFKNSVLYSYSSAKSCTAIGRKMIDYLNSVLNGSKVENGK 716 Query: 698 LILADFPRNIF--SGETM-FNKELEVPNMNESFKFRSVYGDTDSIFSEISTKDIEKTAKI 754 ++LA P N F G + N + ++P +F F+SVYGDTDSIF E+ T DI K+ ++ Sbjct: 717 VLLATKPINPFFEDGRNVDINIDTKLPT-EYTFNFKSVYGDTDSIFLEMDTNDISKSIRV 775 Query: 755 AKHLEHIINTKILHANFKIEFEAIYTQLILQSKKKYTTIKYLANYKPGDKPIRVNKGTSE 814 AK LE IIN +IL +NFKIEFEA+Y LI+QSKKKYTT+KYL ++ P R+NKGTSE Sbjct: 776 AKELEKIINERILFSNFKIEFEAVYKNLIMQSKKKYTTLKYLPSFTNESIPERINKGTSE 835 Query: 815 TRRDVALFHKHMIQRYKDMLMKLLM-ESKGQQEITRLILQSLETDMISEF-THNREFEKY 872 TRRDV+ FHK+MI+ YK L+++L + ++ IL SLE+D+ EF T + + Sbjct: 836 TRRDVSKFHKYMIRIYKTRLLQMLSGGNMSSVQVCVEILSSLESDLQIEFETKTAPLDMF 895 Query: 873 LLSRKHHNNYKSATHSNFELVKRYNLENTXXXXXXXXXXXXXXCDISLPWQKKLCNILSY 932 LLSR HH NYKS+ + N LV YN N C+ PWQKKL NI +Y Sbjct: 896 LLSRTHHCNYKSSDNPNMYLVNEYNKNNDEIIEIGERYYFAYICNKKEPWQKKLVNIKTY 955 Query: 933 EVIADSKFYLPKDKRIFYEIYFKRIASEVVNLLTDKTQCMLFFSRLFGTKPVF 985 E I D F L +RIFYE+YFKR+A+E+VNLL +K + FF ++FGT+P+F Sbjct: 956 ERIIDRSFKLKSTERIFYEVYFKRLATEIVNLLDNKVLSISFFEKMFGTRPIF 1008 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 132,578 Number of Sequences: 156 Number of extensions: 8016 Number of successful extensions: 46 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38 Number of HSP's gapped (non-prelim): 1 length of query: 988 length of database: 48,119 effective HSP length: 71 effective length of query: 917 effective length of database: 37,043 effective search space: 33968431 effective search space used: 33968431 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 97 (42.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634765|ref|NP_039058.1| ORF FPV095 [Fowlpox virus] (272 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150477|ref|NP_150472.1| LSDV038 hypothetical protein [lumpy... 266 5e-074 >gi|15150477|ref|NP_150472.1| LSDV038 hypothetical protein [lumpy skin disease virus] Length = 266 Score = 266 bits (680), Expect = 5e-074 Identities = 129/265 (48%), Positives = 184/265 (68%), Gaps = 4/265 (1%) Query: 10 DIIGNAHERTDDQKTFNRMNLPPILNNTFLYHDYAYGWIPETALWNTQYEKLDIRSYYPI 69 DI + +R DDQKT+ NL P++ NT+LYH+Y+YGWIPETA+W++++ LD+ +YPI Sbjct: 4 DIYSESQKRNDDQKTYFTRNLSPLMKNTYLYHNYSYGWIPETAIWSSRFANLDVTEFYPI 63 Query: 70 TLGLLNKFEFMLGLHQGPPPQYTPKINIQYLNQIS-TVNLNDYFKKFSILPVDQLISFLL 128 T+ L+ KFEFML L+ GP Y KIN +++++ S + ++ + FS+LP + ISFLL Sbjct: 64 TINLIKKFEFMLSLYDGPILPYEEKINTEFISRGSFSGRYINFLRNFSLLPTSEFISFLL 123 Query: 129 LTSIPIYNILFFFKNTTFNPRIHSLTGSFYIDDAKHIELAKYLIRGGDYKPIFGKLDRQG 188 LTSIPIYNILF+FKNT F+ + H+L Y ++ KHIEL KY + GDYKP+F +L Sbjct: 124 LTSIPIYNILFWFKNTQFDIKKHTLFSEVYTNNDKHIELGKYFRQTGDYKPLFSRLKDNN 183 Query: 189 LYDGTL-FPVNMATLQIPATSPNLYLLNIETLENLSVIISNTKQDPVLIFLIFYLPGLSV 247 +Y TL FP+N + + P + ETL NLS I+ T DPVL+FL+FY+P +S+ Sbjct: 184 IY--TLPFPINQSNINNPTLPIGFSKSDYETLSNLSAILYLTNYDPVLMFLVFYVPKISI 241 Query: 248 TTKITPAVEYLMNKLGLKKENVILV 272 TTKITPAV+YLM+KL + + ++ LV Sbjct: 242 TTKITPAVKYLMDKLNMNETDITLV 266 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.143 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,428 Number of Sequences: 156 Number of extensions: 1905 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 1 length of query: 272 length of database: 48,119 effective HSP length: 61 effective length of query: 211 effective length of database: 38,603 effective search space: 8145233 effective search space used: 8145233 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634766|ref|NP_039059.1| ORF FPV096 [Fowlpox virus] (571 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150476|ref|NP_150471.1| LSDV037 hypothetical protein [lumpy... 567 e-164 >gi|15150476|ref|NP_150471.1| LSDV037 hypothetical protein [lumpy skin disease virus] Length = 566 Score = 567 bits (1461), Expect = e-164 Identities = 280/567 (49%), Positives = 394/567 (69%), Gaps = 7/567 (1%) Query: 1 MDFIRRKYLIYTVENNINFFTQELADKISNFCLNHVVAINYIIKKYHKSVLTKDIFNNTN 60 MDFIRRKYLIYT+EN ++F E+ KISNF LNH++AI Y+I + + V++KD+ +N N Sbjct: 1 MDFIRRKYLIYTIENKVDFLKDEVLTKISNFTLNHILAIKYLILNFPRDVISKDVLSNPN 60 Query: 61 FYIFLHFIRDCETYDIVLKSSFDVTLLYLNQLVKNYTSFTDFIDIYKQQSNTLLDDKRFL 120 FY+FLH ++ + Y+ VLK SFD+ LY+ L+KNY F + I+ YK + L D +F+ Sbjct: 61 FYVFLHMVKCDDIYETVLKHSFDIPTLYIKALIKNYPLFNNTIERYKTLVSELFLDDKFI 120 Query: 121 FVTKLSPYFQDIISVNFSTELNPLFHLNEPIKDLEIIYSKLFKETRFIKVDRISVLRLLI 180 + K S F +II+VN+ LNPLFH NEPIK++EIIYSKLFK++ F KV ++ V+RL+I Sbjct: 121 EIVKYSSEFDNIIAVNYDLLLNPLFHNNEPIKNMEIIYSKLFKKSNFRKVKKMEVIRLMI 180 Query: 181 WAYSLKMDTGMKFDDNDSHDLYTILQKTGPV-VSSIMTETFKEFVFPKNSTTSYWLFMKE 239 WAY K DTG+ F D DS D+YT+ QK+ V + S MTE FKE++F + TSYWL++ E Sbjct: 181 WAYLSKQDTGLDFTDFDSQDIYTLFQKSDKVIIHSDMTEKFKEYIF-GSEKTSYWLWLNE 239 Query: 240 RIYNDEKVYTNEPAITIYEKVLSYIYSEIKQARVNKNMLKVVYMLDSDSEIKKFMLELIY 299 I+ND VY A +Y+K+LS+IYSEIKQ RVNKNMLK+VY+ ++D I+ +L++IY Sbjct: 240 SIFND-NVYNEGVAELMYDKILSFIYSEIKQGRVNKNMLKLVYIFENDEYIQSILLQIIY 298 Query: 300 GIPGDILSIIDERDETWKSYFVDFYHDNFIDDKTFTSANRFYDDLFNVIAKIDPEKFDIR 359 G+PGDILSIID +D+ WK YF+ FY +NFID KTF SA F DLF V+AKI+PE FD Sbjct: 299 GVPGDILSIIDVKDDNWKKYFIGFYKENFIDGKTFISAKTFNYDLFKVVAKINPEYFDPD 358 Query: 360 RDIESIFRTDATLVKRFDDMKINSTYVSQMIYQTQNVDLLALENKKLCQIYNKDTEYAIK 419 + I SIF VK FD + IN+T++S +IY+T ++L +E + CQIYN++TEY IK Sbjct: 359 K-IISIFDHKPEKVKYFDTIDINNTFISNIIYETNELNLSTIEELQSCQIYNEETEYFIK 417 Query: 420 EYNTYLYLNEDNPIVIYKGELKKLSDLDLNSPSIVXXXXXXXXXXXXXXXXXXXXGLIIE 479 EYNTYLYL E +P ++Y G L +S + N GL++ Sbjct: 418 EYNTYLYLKEKDPYILYNGILTNISKVPSNKK---FSLFSKNILKYYIDGKLANIGLVLP 474 Query: 480 NYKDDIILKIITGSSCLQNFTSFIVYATCNDKSILKSVVRTIINHFKVAIIILFKQFLQE 539 NYK DI++KI++ C+++ T FI ++ C + SIL S++RTI+ +F ++IIILF++FL+E Sbjct: 475 NYKGDILVKILSHLKCVEDVTVFIKFSVCKNSSILPSIIRTILANFNISIIILFQKFLRE 534 Query: 540 NIYYVNEYLDNTKHLSKNDKKFILQII 566 N++YV +L+ T HL+ NDKK+IL+II Sbjct: 535 NLFYVESFLEKTNHLTNNDKKYILEII 561 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.141 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,021 Number of Sequences: 156 Number of extensions: 5204 Number of successful extensions: 31 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 1 length of query: 571 length of database: 48,119 effective HSP length: 67 effective length of query: 504 effective length of database: 37,667 effective search space: 18984168 effective search space used: 18984168 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 94 (40.8 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634767|ref|NP_039060.1| ORF FPV097 variola B22R gene family protein [Fowlpox virus] (1912 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150573|ref|NP_150568.1| LSDV134 variola virus B22R-like pro... 500 e-143 >gi|15150573|ref|NP_150568.1| LSDV134 variola virus B22R-like protein [lumpy skin disease virus] Length = 2025 Score = 500 bits (1288), Expect = e-143 Identities = 313/971 (32%), Positives = 493/971 (50%), Gaps = 60/971 (6%) Query: 963 ILEAVSTSLTTVGTSMATVGIVTSPHLAFAGMGLSLISGLIDAGKDIYYFFSGVPRPLDP 1022 I+ V++ L+ +G ++A G SP A AG+ + ISGLIDA IY+ SG +P DP Sbjct: 984 IVNIVTSVLSQIGGTLAMAGS-GSPKAAAAGLVIQGISGLIDAATSIYFLLSGQEQPKDP 1042 Query: 1023 VVQKFSMYRDIVSDTSHMGVRKCMMPGYDITVFLSYRNDSSFMPTTEKLATYFIDTIDSV 1082 ++KFS Y VS T G R CMMP DIT+ L+YR+ S+ EK + D I S Sbjct: 1043 AIEKFSNYASYVSKTD-AGARVCMMPDSDITITLAYRH-SNMNVEAEKTRGEYTDIIPST 1100 Query: 1083 LYYLNTSGIIIDFSLTVACPIGYLRSPTLDITSYTKLKFTTEDNVKFYQFTRLGAMLSKF 1142 +YYL S I +T+ CPIG LR DI +Y L +D VKFY + +LS Sbjct: 1101 VYYLKNSQISYTVKVTLVCPIGQLRLLEADINTYATLTREDKDGVKFYHVFGILELLSYH 1160 Query: 1143 STVELTCGKDSTLTLKPFEVPISEMELLKMSTPGEPEETKSIPSNVCDIFPMKNFYLSVK 1202 V TCG + + PFE +S+M+LL++STPGEP E +++ S+VCDI+P+K FY+ Sbjct: 1161 PNVTFTCGNEPGVIFIPFEQKLSDMQLLRISTPGEPREAEAMSSDVCDIYPLKKFYVLAG 1220 Query: 1203 GCPYDGSQVAITRTTCSILLRMATWDDVRDRWVLENPFER-NSKHRQLFTFEKYDFN--H 1259 CP+D S+ ++ TCS LLRM+T++ + RW+L NPF N + QLFTF+KYDF+ Sbjct: 1221 NCPFDMSRKSVAYVTCSTLLRMSTYEHEKQRWILMNPFSNGNEDNIQLFTFKKYDFSAEK 1280 Query: 1260 TVIKPNTIPGHAKFCSNRQIKECYWTDVMILDDITTCSNRARTLYVELNTFDSNRGFTSF 1319 IK N+I CS C+W D MIL+D+T+C++R R L VE++T S +G+ +F Sbjct: 1281 DKIKLNSISHSDTICSQSDTSTCFWADAMILEDVTSCNSRIRKLSVEMSTV-SEKGYNNF 1339 Query: 1320 VLTCPSGSTPVAVGDKDGIIELPLADFYTVKMFSSIKPRTIGVFCVNNYDKRYKSDMIMV 1379 VLTCP GSTP + + II +P+ T F+S + C++N + YKSD++ V Sbjct: 1340 VLTCPYGSTPFYISN-GSIISIPMNTRRTSVRFASKHNNVALISCIHNSNPAYKSDIVEV 1398 Query: 1380 SFINPKYDNESVLIDTYEGKNRIFDDLTGNHRMPWRSRTCVTWKQGRTCIGYYGKVEVWT 1439 F + + ++ + +FD + MP RS+TC + C YY V Sbjct: 1399 MFKQSNMSDMYLDFKYFKDRKYLFDSF--SDIMPKRSKTCKRASENSNCKNYYYIKHVPE 1456 Query: 1440 PDFLLQVDVGSELLVTEKYDPNTVDIYNIEKANLKFPYELDVEFSVGNLGMAYDDPDRFW 1499 +F + V + + Y ++ +EK N F + + L Y + + FW Sbjct: 1457 IEFKVYVAKLPMVRLGTSYS-GVLNYQTLEKVNKYFSTPISISVDASTLSDVYKNQEHFW 1515 Query: 1500 LDAEKQFRTYSSILLVVLPCTSRANILTYKAEEIISVLG----------YIQSMTNDYGD 1549 A ++ RT+SSI + C +++ K + V G YI + D+ Sbjct: 1516 KFAMEKKRTFSSITATIFAC----SVVAGKVNVNMGVKGSHDYYGRSGKYIYMGSKDFAS 1571 Query: 1550 GKKYTFKHIEG----------GECMAELDLKTKLMRLKCPMFTIPR---TINKYEGLCFV 1596 K FK I GEC LDLKT+ + + CP TIP+ LC + Sbjct: 1572 NDKIYFKFIPDKAEYRLKDTYGECEIYLDLKTRRVNVNCPELTIPQHPFDSPDVNSLCVL 1631 Query: 1597 TITSRDHCAIQSDDYKKYG----------YPKTTADKVRYCGSHVWPDERDPGHYCGYIS 1646 TSRDHCAI ++++ Y Y D R +P + ++C I Sbjct: 1632 VATSRDHCAISEENWRSYDRTHGVGYSHEYVDAEFDSCRKSHGPTYPVDNFCFYWCAGI- 1690 Query: 1647 NLNHVPYTHPKYEACRANILIHYRDTWIESEVLDKPPYVFDFKYDKKSTNEYVDKELSDK 1706 Y P Y+ C +++++ Y + E+ ++ PPY+ +F Y+ NEYV +EL +K Sbjct: 1691 ------YWPPDYDPCASSMVLGYSPIFPENRIV-HPPYIKEFGYE-PGKNEYVKRELYNK 1742 Query: 1707 LEKLYKDYTRLMEYRDGSLPNAINRLASALTNDGRSISDVVVDSEVLEIAYEADKEKILE 1766 L+ LY+ Y L+ Y + N LA ++T++ R I ++ +S ++ A E + K + Sbjct: 1743 LQNLYEKYNMLVLYSMNPVVEMSNGLAKSMTSEAREIFRLIANSNEMQKAKEENDMKAEK 1802 Query: 1767 LEESIVQTTRDVLINTLSDEDVEEIFYKESDEKCCLLDVVNNSSIKLYPDEHYTCGVLKD 1826 ++ I +T ++ ++TLS + + +CC+LD S K + E+Y CG D Sbjct: 1803 VKMEIEETLNNIYVDTLSYSESTSLLRSAISTRCCVLD--GTSVYKYFDLEYYLCGNYSD 1860 Query: 1827 FMYTDDENTWLLVNGSFVDYDLVGVTGIPILTCFYPTIVPL-KQSVIKDIEKNLLLHAIE 1885 ++ + T++ +N S ++ D+ V IP +TCF+ T+V + + K E ++ A E Sbjct: 1861 YLININNVTYVKINDSLIEEDIYLVRNIPQVTCFHITLVSVNNEEQQKKFETEIVTMAFE 1920 Query: 1886 DAMQDLIYDLD 1896 D + ++ + D Sbjct: 1921 DVLTEIFDEYD 1931 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.317 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,210 Number of Sequences: 156 Number of extensions: 10152 Number of successful extensions: 71 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 5 length of query: 1912 length of database: 48,119 effective HSP length: 75 effective length of query: 1837 effective length of database: 36,419 effective search space: 66901703 effective search space used: 66901703 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 99 (42.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634768|ref|NP_039061.1| ORF FPV098 variola B22R gene family protein [Fowlpox virus] (1802 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150573|ref|NP_150568.1| LSDV134 variola virus B22R-like pro... 459 e-131 >gi|15150573|ref|NP_150568.1| LSDV134 variola virus B22R-like protein [lumpy skin disease virus] Length = 2025 Score = 459 bits (1182), Expect = e-131 Identities = 313/993 (31%), Positives = 482/993 (48%), Gaps = 63/993 (6%) Query: 827 LRSFMIQXXXXXXXXXXXXXXSTAIGTIGSVVTASGIIASPQVAFAGMGLSAISGLLDAG 886 + S M Q ++ + IG + +G SP+ A AG+ + ISGL+DA Sbjct: 968 ISSIMAQANHQPKELTIVNIVTSVLSQIGGTLAMAGS-GSPKAAAAGLVIQGISGLIDAA 1026 Query: 887 RDIYYILSGKQRPQDPVLKTFNAYRDYVTDTSKSGVRKCMMPGTETIVYMSYRNDSIVIP 946 IY++LSG+++P+DP ++ F+ Y YV+ T +G R CMMP ++ + ++YR+ ++ + Sbjct: 1027 TSIYFLLSGQEQPKDPAIEKFSNYASYVSKTD-AGARVCMMPDSDITITLAYRHSNMNVE 1085 Query: 947 SLEKLSLFFVDSIDSVLYYLNTSNIILDFSLTVACPIGYLRSPTLDINAYTVLKFTSEDG 1006 + EK + D I S +YYL S I +T+ CPIG LR DIN Y L +DG Sbjct: 1086 A-EKTRGEYTDIIPSTVYYLKNSQISYTVKVTLVCPIGQLRLLEADINTYATLTREDKDG 1144 Query: 1007 ARFYTFTRLGAMLSKFPVVLLTCGRDITLTLRPFEIALNEMQLLKMSTPGEPEETKSIPS 1066 +FY + +LS P V TCG + + PFE L++MQLL++STPGEP E +++ S Sbjct: 1145 VKFYHVFGILELLSYHPNVTFTCGNEPGVIFIPFEQKLSDMQLLRISTPGEPREAEAMSS 1204 Query: 1067 NVCDIFPLKRFYLTVRGCPFDNSMVSVVYTTCSVLLRLATWEPLYQRWVLENPFEQ-NGR 1125 +VCDI+PLK+FY+ CPFD S SV Y TCS LLR++T+E QRW+L NPF N Sbjct: 1205 DVCDIYPLKKFYVLAGNCPFDMSRKSVAYVTCSTLLRMSTYEHEKQRWILMNPFSNGNED 1264 Query: 1126 LRQLFTFQKYDFN--ETVIKPNEIPGHSKFCTNRHATECYWAELMVLDDTSPSCASRSRT 1183 QLFTF+KYDF+ + IK N I C+ + C+WA+ M+L+D + SC SR R Sbjct: 1265 NIQLFTFKKYDFSAEKDKIKLNSISHSDTICSQSDTSTCFWADAMILEDVT-SCNSRIRK 1323 Query: 1184 IYLELYTFGNGRGFTSFVLTCPSGSTPVAVGDKDGIIELPLADFYTVKMFASKKEKKIGV 1243 + +E+ T +G+ +FVLTCP GSTP + + II +P+ T FASK + Sbjct: 1324 LSVEMSTVSE-KGYNNFVLTCPYGSTPFYISN-GSIISIPMNTRRTSVRFASKHNNVALI 1381 Query: 1244 FCVDNYNSALKSDLININFVSQRYQEGIIYLDEYMGKEKVFEDVSQLGNMPWRSRRCVTW 1303 C+ N N A KSD++ + F + + + ++ +F+ S + MP RS+ C Sbjct: 1382 SCIHNSNPAYKSDIVEVMFKQSNMSDMYLDFKYFKDRKYLFDSFSDI--MPKRSKTCKRA 1439 Query: 1304 QHKRQCISFHGKIDVWMEDYNLETDVGSELMITEKYEPSTITLQNINKSATLFPYELKVE 1363 C +++ V ++ + + + Y + Q + K F + + Sbjct: 1440 SENSNCKNYYYIKHVPEIEFKVYVAKLPMVRLGTSYS-GVLNYQTLEKVNKYFSTPISIS 1498 Query: 1364 FYIGNLGNAYSKPERFWDDATRSYRTYSSIVLALIPCTMRANMLMYNISDFISVMAYHQS 1423 L + Y E FW A RT+SSI + C++ A + N+ S Y +S Sbjct: 1499 VDASTLSDVYKNQEHFWKFAMEKKRTFSSITATIFACSVVAGKVNVNMGVKGSHDYYGRS 1558 Query: 1424 TTY------DYGDGSKYTF--------YRI--TGSECIAYLDLKSKMMSVRCEPFSIPR- 1466 Y D+ K F YR+ T EC YLDLK++ ++V C +IP+ Sbjct: 1559 GKYIYMGSKDFASNDKIYFKFIPDKAEYRLKDTYGECEIYLDLKTRRVNVNCPELTIPQH 1618 Query: 1467 --TINEYEGMCFITVTSRDHCA------TDIDDIKNSGYTKEQADKP-RYCDTYITPSVS 1517 + +C + TSRDHCA D GY+ E D C P+ Sbjct: 1619 PFDSPDVNSLCVLVATSRDHCAISEENWRSYDRTHGVGYSHEYVDAEFDSCRKSHGPTYP 1678 Query: 1518 EDAGHYCGYFSQLRHIGYIHPDYEACKSYINIHYKDVWIENEVLLKPPYAFEFKYNK-NN 1576 D ++C Y+ Y PDY+ C S + + Y ++ EN + + PPY EF Y N Sbjct: 1679 VD--NFCFYWCAGI---YWPPDYDPCASSMVLGYSPIFPENRI-VHPPYIKEFGYEPGKN 1732 Query: 1577 EYIDPKLADSLKKLYDEYKSISQYANSSLPESINRLSTSLTPEGRSITDVSIDSGVLEAA 1636 EY+ +L + L+ LY++Y + Y+ + + E N L+ S+T E R I + +S ++ A Sbjct: 1733 EYVKRELYNKLQNLYEKYNMLVLYSMNPVVEMSNGLAKSMTSEAREIFRLIANSNEMQKA 1792 Query: 1637 FEANVEKLIELEEQIADTAYTVLTNTLSDDDLQEIYSD--EETCCKIDFYDNSVSKTVTS 1694 E N K +++ +I +T + +TLS + + CC +D SV K Sbjct: 1793 KEENDMKAEKVKMEIEETLNNIYVDTLSYSESTSLLRSAISTRCCVLD--GTSVYKYFDL 1850 Query: 1695 GNYSCGKLDDYLYDDFVEYDDPSDDENRVLILINGTL--EDFDVLKNIGKPVITCXXXXX 1752 Y CG DYL + N + IN +L ED +++NI P +TC Sbjct: 1851 EYYLCGNYSDYLI----------NINNVTYVKINDSLIEEDIYLVRNI--PQVTCFHITL 1898 Query: 1753 XXXXXXXXXXXXXXTIVLRAFKEGMEEIMHELD 1785 IV AF++ + EI E D Sbjct: 1899 VSVNNEEQQKKFETEIVTMAFEDVLTEIFDEYD 1931 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 180,541 Number of Sequences: 156 Number of extensions: 9173 Number of successful extensions: 57 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 5 length of query: 1802 length of database: 48,119 effective HSP length: 75 effective length of query: 1727 effective length of database: 36,419 effective search space: 62895613 effective search space used: 62895613 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 99 (42.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634769|ref|NP_039062.1| ORF FPV099 variola B22R gene family protein [Fowlpox virus] (1949 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150573|ref|NP_150568.1| LSDV134 variola virus B22R-like pro... 499 e-143 >gi|15150573|ref|NP_150568.1| LSDV134 variola virus B22R-like protein [lumpy skin disease virus] Length = 2025 Score = 499 bits (1284), Expect = e-143 Identities = 299/955 (31%), Positives = 502/955 (52%), Gaps = 47/955 (4%) Query: 972 PKLMIAGMAVTAITGIIDTVKDVFYLFSGIERPKDPLIKLLDTYSGLINDREKSGVRKCM 1031 PK AG+ + I+G+ID +++L SG E+PKDP I+ Y+ ++ + +G R CM Sbjct: 1007 PKAAAAGLVIQGISGLIDAATSIYFLLSGQEQPKDPAIEKFSNYASYVSKTD-AGARVCM 1065 Query: 1032 VPGDSMMIYMAYQNDTKSFKPEKENTELYFLDTINSELLYMNTSDIILDYQLRVACPIGV 1091 +P + I +AY++ + + EK E + D I S + Y+ S I ++ + CPIG Sbjct: 1066 MPDSDITITLAYRHSNMNVEAEKTRGE--YTDIIPSTVYYLKNSQISYTVKVTLVCPIGQ 1123 Query: 1092 LRSPDTDITAYTIMY--DDGEVKKYVFTRLGILLSRTPVVRLTCGRVTTLTIRPYEVPMS 1149 LR + DI Y + D VK Y + LLS P V TCG + P+E +S Sbjct: 1124 LRLLEADINTYATLTREDKDGVKFYHVFGILELLSYHPNVTFTCGNEPGVIFIPFEQKLS 1183 Query: 1150 SMQLLKMATPGEPKSTRSIPSDVCDKYPLKKFYLLADGCPYDTSQTMIVHTTCSILLKMS 1209 MQLL+++TPGEP+ ++ SDVCD YPLKKFY+LA CP+D S+ + + TCS LL+MS Sbjct: 1184 DMQLLRISTPGEPREAEAMSSDVCDIYPLKKFYVLAGNCPFDMSRKSVAYVTCSTLLRMS 1243 Query: 1210 TWDPFRNRWVLKNPFRQEGEFK-QLFTFSKYDFN--DTIIDPNGVPGHSDFCTNKQSSQC 1266 T++ + RW+L NPF E QLFTF KYDF+ I N + C+ +S C Sbjct: 1244 TYEHEKQRWILMNPFSNGNEDNIQLFTFKKYDFSAEKDKIKLNSISHSDTICSQSDTSTC 1303 Query: 1267 YWTESMMLEDVTSCQTRVRKIYVKIALFGDRGFDSFVLTCPSGSTPVSIDGNDKIIELPV 1326 +W ++M+LEDVTSC +R+RK+ V+++ ++G+++FVLTCP GSTP I N II +P+ Sbjct: 1304 FWADAMILEDVTSCNSRIRKLSVEMSTVSEKGYNNFVLTCPYGSTPFYI-SNGSIISIPM 1362 Query: 1327 GDYGTSKLFASTEKKRIGVFCMHNYDTRYKSDIIVILF-DKNSNPRGIHKSNYNDRDKLF 1385 TS FAS + C+HN + YKSDI+ ++F N + + + DR LF Sbjct: 1363 NTRRTSVRFASKHNNVALISCIHNSNPAYKSDIVEVMFKQSNMSDMYLDFKYFKDRKYLF 1422 Query: 1386 TGLSSGMPFRSRYCDNRRQECYFGDVDFTN--PDVELDIHHSSQEIMLKESYEMESIDPD 1443 S MP RS+ C + + + P++E ++ + ++ + ++ Sbjct: 1423 DSFSDIMPKRSKTCKRASENSNCKNYYYIKHVPEIEFKVYVAKLPMVRLGTSYSGVLNYQ 1482 Query: 1444 IVKKSKTSFPTSIKVTFTVNNLGNAYKNPSRFWEDAINKKRTYSAILISLVPCT--SRNK 1501 ++K F T I ++ + L + YKN FW+ A+ KKRT+S+I ++ C+ + Sbjct: 1483 TLEKVNKYFSTPISISVDASTLSDVYKNQEHFWKFAMEKKRTFSSITATIFACSVVAGKV 1542 Query: 1502 DIKLG------YIVSTMGYLQSETEDYGDGKHYYFK--------KIDTSEGNCRAELDLN 1547 ++ +G Y + Y+ ++D+ YFK ++ + G C LDL Sbjct: 1543 NVNMGVKGSHDYYGRSGKYIYMGSKDFASNDKIYFKFIPDKAEYRLKDTYGECEIYLDLK 1602 Query: 1548 SRDITVSCDPFSIPR--ANVVNYEGLCFAVVTSKDHCATEKEWMKNH------GYTSKYS 1599 +R + V+C +IP+ + + LC V TS+DHCA +E +++ GY+ +Y Sbjct: 1603 TRRVNVNCPELTIPQHPFDSPDVNSLCVLVATSRDHCAISEENWRSYDRTHGVGYSHEYV 1662 Query: 1600 SHSRTCIKRTAFYYTPTDYYCGYNGDIYDYFPDYDSCKSYIHIEYKDLWIESEVIQSPPY 1659 +++ P D +C Y + PDYD C S + + Y ++ E+ ++ PPY Sbjct: 1663 DAEFDSCRKSHGPTYPVDNFCFYWCAGIYWPPDYDPCASSMVLGYSPIFPENRIVH-PPY 1721 Query: 1660 TFEFTHD-RNNEYVSKELSDRMNXXXXXXXXXXXXTDGTLPKSINRLATALTKEGREITS 1718 EF ++ NEYV +EL +++ + + + N LA ++T E REI Sbjct: 1722 IKEFGYEPGKNEYVKRELYNKLQNLYEKYNMLVLYSMNPVVEMSNGLAKSMTSEAREIFR 1781 Query: 1719 VNVDGNILELAYQADKEKIMEIQDKISEITNDIFIHTLTDQDLKEIMEAAENDRCCIIDV 1778 + + N ++ A + + K +++ +I E N+I++ TL+ + ++ +A + RCC++D Sbjct: 1782 LIANSNEMQKAKEENDMKAEKVKMEIEETLNNIYVDTLSYSESTSLLRSAISTRCCVLD- 1840 Query: 1779 RNNLTVKYYPIDKYICGEVSDYVYTDEEETKYVLINDTYITYE-YLNRSGAVVTTCYNVS 1837 KY+ ++ Y+CG SDY+ T YV IND+ I + YL R+ V TC++++ Sbjct: 1841 -GTSVYKYFDLEYYLCGNYSDYLININNVT-YVKINDSLIEEDIYLVRNIPQV-TCFHIT 1897 Query: 1838 IIPLDTKESRKIVEDAIIYNAVSDALNDVFDEMDANISLALIASENDYIESSSSN 1892 ++ ++ +E +K E I+ A D L ++FDE D +++ + YI ++N Sbjct: 1898 LVSVNNEEQQKKFETEIVTMAFEDVLTEIFDEYDDR----MVSYFDKYISDDNNN 1948 Score = 62.0 bits (149), Expect = 1e-011 Identities = 74/327 (22%), Positives = 130/327 (39%), Gaps = 62/327 (18%) Query: 186 DVNETTVEAFMYSNESLIMAGNINSTKNTSEENDPNILKGSTKILQYSNC----NNVTAN 241 ++ E+ AF Y ++ T T N L +T ++ NN T+N Sbjct: 281 NMTESFTTAFSYYSDD---------TTTTEPFTTSNYLNDTTSEPSFTTSRYYLNNGTSN 331 Query: 242 KVNFSII-NTTNGVKVRVSLSNINTDDGSNVNSDELIKCISININNDTVYTHEVISGCEK 300 N S + N G+ +NI N T+ T E + C + Sbjct: 332 YKNISYVYNNKTGIVFVKQQNNI--------------------FKNITIQT-EFKNLCNE 370 Query: 301 CSMKFMASVTSVPEDFNNTMKELGIEMDNSTDSFYLCNLIDD-DDCMEFIDLSSITVGKT 359 S++ VPE FN +K + +E N +DS+++C +IDD +C I + + T Sbjct: 371 SSLETKVYAVGVPEKFNTILKNISVEKSNDSDSYFICKMIDDGGNCGIDIFMDAATNNIN 430 Query: 360 AEMLKHSNLNNTSHSRHRRSIALKTESSSIEEFDCRYLYYPDVSNMDGCEAKIRN----- 414 E+ + S +RH RS+ + ++ F C ++Y+ +D C K N Sbjct: 431 DEL---DSSKKGSSTRHARSV----DHMELDPF-CLHMYHGIDETID-CSLKKNNKDMSS 481 Query: 415 -----RRSDKEPKKEKDTGFTAN----ARKHLGNKPVLPPKASHLQVGIQQKRESGVTGD 465 RRS + K+ N + + +G +P + + +Q+G + + V+G Sbjct: 482 RTNRIRRSPPDKGKKPQVPAKGNLQLMSAEEMGARPKIRKQTQDIQIGARGV-DGPVSGS 540 Query: 466 GAIYNDVKKRAKDLVSSIAPSLPSTGK 492 IY+ V+K + S+ L GK Sbjct: 541 EEIYSQVRKELSQKLKSLV--LDDNGK 565 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.316 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 207,357 Number of Sequences: 156 Number of extensions: 10459 Number of successful extensions: 54 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 7 length of query: 1949 length of database: 48,119 effective HSP length: 76 effective length of query: 1873 effective length of database: 36,263 effective search space: 67920599 effective search space used: 67920599 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 99 (42.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634770|ref|NP_039063.1| ORF FPV100 RNA polymerase subunit, RPO30 [Fowlpox virus] (182 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150474|ref|NP_150469.1| LSDV036 hypothetical protein [lumpy... 219 5e-060 >gi|15150474|ref|NP_150469.1| LSDV036 hypothetical protein [lumpy skin disease virus] Length = 201 Score = 219 bits (557), Expect = 5e-060 Identities = 99/179 (55%), Positives = 136/179 (75%) Query: 2 DMMKIIKKYINSEEEAQKLLKWAIDNANIYYLRNIVNTKVNIEETKFKTVHNIGIEYSKD 61 D+ II KY+ + + +++LKWA D A+ +Y+RNI+NTK NIEETKF+ +NIGIEYSKD Sbjct: 19 DIEDIIYKYVKEKSKVKEILKWATDKASKFYIRNIINTKSNIEETKFEPRNNIGIEYSKD 78 Query: 62 NKYKLSYRNKPSIATNEKYKELCNLIRSTNGIEKETLRYLLFGIKCVHAKVEYDIEKVPD 121 +K KLSYRNKP I TN+ Y ++C+LIR+TNG EKE LRY+LFGIKCV VE++I+ + D Sbjct: 79 SKNKLSYRNKPLIETNKDYPDICDLIRTTNGTEKEILRYILFGIKCVQKNVEFNIDNIRD 138 Query: 122 YDYSNYFDVLKEKSTIRCVACKSNNTIPMILQTRSSDEEPTVRVVCKDCGKNFAPPRLK 180 ++ YF+VL +K + C CKS NTIP+++QTR++DE P V C+DC KNF PP+ + Sbjct: 139 INHEEYFNVLDKKYNLPCPECKSKNTIPVMIQTRAADEPPLVMHSCRDCKKNFKPPKFR 197 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.317 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,269 Number of Sequences: 156 Number of extensions: 1587 Number of successful extensions: 10 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 1 length of query: 182 length of database: 48,119 effective HSP length: 57 effective length of query: 125 effective length of database: 39,227 effective search space: 4903375 effective search space used: 4903375 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634771|ref|NP_039064.1| ORF FPV101 [Fowlpox virus] (717 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150472|ref|NP_150467.1| LSDV033 hypothetical protein [lumpy... 210 1e-056 >gi|15150472|ref|NP_150467.1| LSDV033 hypothetical protein [lumpy skin disease virus] Length = 735 Score = 210 bits (534), Expect = 1e-056 Identities = 192/749 (25%), Positives = 324/749 (42%), Gaps = 80/749 (10%) Query: 21 YKHSQLQKAFLKLPITEVVMLVKSGFYPSKLSKKFYKPIAKFCVDKIYLFKPEYVSLKDL 80 Y L +++ K+ I + + ++ +G P+ L +K+Y I K KIYLFKP+ V DL Sbjct: 15 YNCDNLTESYKKVNIDDAMKMLINGINPNNLPQKWYFRIRKEFPSKIYLFKPKTVPFVDL 74 Query: 81 FTVIYTFDDLSXXXXXXXXXXXXLSVSNSYQVYKKC-----------------------K 117 ++Y ++ + S ++ KC + Sbjct: 75 IALVYNQKNIELYREHINFHKKDIIKKCSKRIILKCIQYMVIADDDIFCLIHRFSNIEVE 134 Query: 118 NILGYKDEYDNDIIEELSENDLVEKM-VNFPGFRKIVYKKKILSIRILKEMYYKHKVLPI 176 NIL + I L L EK+ +N +Y+ + + L +M YK+ ++P Sbjct: 135 NILTKINSESIKNINYLFSESLAEKIFINDFSLCDSLYQHQSFESKFLMDMLYKYGIIPN 194 Query: 177 NKGITPIREEDICFFIXXXXXXXXXXXXXXXXXEINEQILDSDEVKETIIRKICKGENID 236 N GI ++ + + L D +K+ II KI GE +D Sbjct: 195 NDGILSAISIELILDVLQSIKFHKDILTFLDMLTFEQ--LKDDRIKKFIITKIKNGE-VD 251 Query: 237 VLRYYVSHYLIDHA-KLGVYYNIFFSERDI-ISEYGLTDESLKVICKYIDRYXXXXXXXX 294 + Y +L D +LG+YY+ FF + I ++Y LT + LK+ CKYID Y Sbjct: 252 QYKTYAIEFLYDKKDELGLYYSFFFKDPLIDFTKYELTKDFLKICCKYIDNYDYNNKMYI 311 Query: 295 XXXXDNSNY-TLLASVIDYIPEERLNENLYMQIVRHSNDNKPKIKSFKAEFLSECLMVMC 353 NY LL+++ID IP L E L ++IV SN K KIK + +M++C Sbjct: 312 INYLIEKNYINLLSTIIDKIPLNILTEELCIKIVCESNI-KVKIKDIPIH--TSLVMIVC 368 Query: 354 YLRGYEDIVDFLIALDVETIVRNRINPFNDYTFTTDWFNKNTELVRLYISFYFIDPVMMR 413 GYED+V+ L +D+ ++ N +DYTF+TDW+NKN +L+ +++ Y M Sbjct: 369 IEMGYEDLVELLDTIDINVLLEKNANLVSDYTFSTDWYNKNNKLIDIFVQKYGFCSHKMN 428 Query: 414 KLLFEYPLCETSTTVAIEELKKYRSSINNNYNIDYHEEFKIVDLPRSFNIPISEVVS--- 470 KL+FEYPL +TST Y +I ++ NI+ + +KI P F + + S Sbjct: 429 KLMFEYPLNKTST--------MYLLNIFSSNNINKYFSYKI--QPSLFYLSCTHSESNVN 478 Query: 471 -----TKEYNSIISF--ISDKSYKF-----KITSQLLKYNILQTIKVENLCYSHINNLHS 518 + ++I F +S+K+ F KI S +L NI + S+I + Sbjct: 479 FILKKVSDIKNLIPFKKLSNKNSMFIYDQNKIKSLILYSNIPEIDMTVFKNISYIEDSTG 538 Query: 519 FYFNITKPSGIIDNISR-LIYQIGDLGRLLRHGFLSFTDNYFGKWIPSLNYSKILDHYQY 577 I K + II ++ Q+ + +L +G + YF W+P ++ I+ +Y Sbjct: 539 IKIQINKENDIILKTEEDILNQVFTIAKLTTYGLVYLPYRYFPSWVPIID---IIKGSKY 595 Query: 578 NGPDYVLSWQIGKLDLKAFVKYKDFPKFFLTKYNIDFLLEKEVXXXXXXXXXXXXXXXVG 637 + P + I K+ F++YK + Y+++ + VG Sbjct: 596 SHPSKIEHGVIFKISPVDFIEYKFLGNYITNIYSLNEPISNFHSIINSFIQILFLYLVVG 655 Query: 638 SVTYVEQENIYYFITNIINSFIQGLGIRNSIDSLSEEVVKELIIIQK---------LPEN 688 S N+ FI+ +I++F G+ I ++ V KEL + +K + +N Sbjct: 656 STYSSRGTNV--FISLLISNFFTGMKINETLTEDISSVCKELNLFKKYICDSGFVIIKKN 713 Query: 689 KRKLSSIRPVSLLNLCKRVCAFISRDGKK 717 K + L C++VC FI + +K Sbjct: 714 YLK-------NTLLFCEKVCTFIVLNKQK 735 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.142 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,915 Number of Sequences: 156 Number of extensions: 5467 Number of successful extensions: 42 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 1 length of query: 717 length of database: 48,119 effective HSP length: 68 effective length of query: 649 effective length of database: 37,511 effective search space: 24344639 effective search space used: 24344639 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634772|ref|NP_039065.1| ORF FPV102 Poly(A) polymerase large subunit, PAP-L [Fowlpox virus] (472 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150471|ref|NP_150466.1| LSDV032 poly(A) polymerase large su... 429 e-123 >gi|15150471|ref|NP_150466.1| LSDV032 poly(A) polymerase large subunit [lumpy skin disease virus] Length = 474 Score = 429 bits (1104), Expect = e-123 Identities = 223/467 (47%), Positives = 306/467 (64%), Gaps = 5/467 (1%) Query: 10 IINEYLGRHPSSTEYQVLKHQVEKISKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 69 ++ YL R PS TE+ +LK Q + I ++ Sbjct: 9 VLKLYLKRDPSLTEFHMLKSQYKNIQRVNIFNKEIFISLIKKNKKKFFSDIKSSPSDIKR 68 Query: 70 RIDEYFSKQKHAKRLGNLFAIMELQKILISSFTKTIGILTTKVPEYYHSTIKLEYSSMEK 129 I YFSKQ++ +G L+ I+ELQ IL++++T +GILTTK P+ + S I SSM+ Sbjct: 69 SILTYFSKQENTYSIGKLYTIIELQSILVTTYTDVLGILTTKGPDLFTSNIYYNTSSMQS 128 Query: 130 IADDILDSYNVVEPSKEVKGRHKVSDLVGHVYKIMEEYLRRHSNSCLCYGSYSLHFLNNK 189 +A D L+ NV + + + GRH VS LV +V +MEEYLRRH+ +C+CYGSYSLH LN Sbjct: 129 LARDALNFMNVAQMTDKTMGRHNVSSLVDNVNSLMEEYLRRHNKNCICYGSYSLHLLNPD 188 Query: 190 IEYGDIDVLQTNARTFLINIAFLIKFITGRRIVLLKVPFLKNYVIMHDEETNHVMDTFNI 249 ++YGDID+LQTN+RTFLI++AFLIKFITG +VLLKVP+LKNY+++ D+ +H++D+FNI Sbjct: 189 VKYGDIDILQTNSRTFLIDLAFLIKFITGLNVVLLKVPYLKNYMVLKDQNDSHIIDSFNI 248 Query: 250 REKTMNMIPKIMIDNMYIVDPCIQLLNMIKMLSQIDRLEELQAKFEKLSVRLGTLLEYTR 309 R+ TM IPK++IDN+YIVDP +QL++M+KM SQIDRLE+L EKL+VRL TLLEY R Sbjct: 249 RQDTMQSIPKVLIDNIYIVDPALQLMSMLKMFSQIDRLEDLAKNPEKLTVRLATLLEYVR 308 Query: 310 YRYSIPLDS----ESILEVRAKLDKDKRKITVDFKKYKLNYIKCYFYLDEVELKKFISKN 365 Y I S ++ + + + +D DKR ITVD Y + KC YLDE L I + Sbjct: 309 VNYGINFISNQTKKNNMPMYSVIDIDKRIITVDTSNYDFPFKKCLVYLDESSLSSDI-LD 367 Query: 366 SGLDEYEDFEAVTNSEYAIRNKTMYTYFSNTALMRSENEIHPITINALTSHALLYHVITR 425 D+ DFE V+NS + I N +YTYFSNT LM+S+ +IH I+ L++H L+Y ++T+ Sbjct: 368 LNADDAIDFENVSNSAFLINNNILYTYFSNTILMKSKTDIHEISSRGLSAHILIYQILTK 427 Query: 426 KFYDDLLGDLVRSLMIVEKVPVFKIIPRDKKQGRHTIIDIEKDIIFH 472 L D+V SL+ VEK P++ IIPRDKK G+H IIDIEKDII H Sbjct: 428 GDIIKPLTDIVNSLIGVEKNPIYDIIPRDKKSGKHGIIDIEKDIITH 474 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.139 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,890 Number of Sequences: 156 Number of extensions: 2926 Number of successful extensions: 20 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 1 length of query: 472 length of database: 48,119 effective HSP length: 65 effective length of query: 407 effective length of database: 37,979 effective search space: 15457453 effective search space used: 15457453 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634773|ref|NP_039066.1| ORF FPV103 DNA-binding, virion core phosphoprotein [Fowlpox virus] (114 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150470|ref|NP_150465.1| LSDV031 putative DNA-binding virion... 67 2e-014 >gi|15150470|ref|NP_150465.1| LSDV031 putative DNA-binding virion core phosphoprotein [lumpy skin disease virus] Length = 104 Score = 66.6 bits (161), Expect = 2e-014 Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 4/104 (3%) Query: 9 FHDPKYFVSPFILNTDEGRYLVLKAIKLCNVRTIDCMKQETSCVLKVDKPQSPCPISSSD 68 ++ Y +PF + T EG+YLVLKAIK+C++RT++C + SC+LKV+K C SS Sbjct: 4 YNSQYYANTPFYITTKEGKYLVLKAIKVCDIRTVECDGDKASCILKVEKSNQTCDRPSS- 62 Query: 69 SAPKCYMXXXXXXXXXXXXXLRFINTGALSNLFANTTDKAARVI 112 C + F+ T L +L A +R++ Sbjct: 63 ---PCERAARASSPNRGNNSVPFMRTNMLEDLQAKNRSVMSRIL 103 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,722 Number of Sequences: 156 Number of extensions: 371 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1 length of query: 114 length of database: 48,119 effective HSP length: 52 effective length of query: 62 effective length of database: 40,007 effective search space: 2480434 effective search space used: 2480434 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634774|ref|NP_039067.1| ORF FPV104 hypothetical protein [Fowlpox virus] (210 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.142 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,335 Number of Sequences: 156 Number of extensions: 1796 Number of successful extensions: 12 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 210 length of database: 48,119 effective HSP length: 58 effective length of query: 152 effective length of database: 39,071 effective search space: 5938792 effective search space used: 5938792 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634775|ref|NP_039068.1| ORF FPV105 [Fowlpox virus] (148 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150468|ref|NP_150463.1| LSDV029 hypothetical protein [lumpy... 149 4e-039 >gi|15150468|ref|NP_150463.1| LSDV029 hypothetical protein [lumpy skin disease virus] Length = 145 Score = 149 bits (376), Expect = 4e-039 Identities = 67/146 (45%), Positives = 102/146 (68%), Gaps = 2/146 (1%) Query: 1 MNVSRLEELISMNPFSDMENIVINEKEKCILGNRCFVKLSEVYNMPMCCIDTNQCLTMNR 60 MNV++L+E+I ++PF +M+ I IN+ + C+LGNRCFVK+ V + P + T+ + + Sbjct: 1 MNVNKLDEIIKLSPFRNMDKIKINKDDNCLLGNRCFVKMDTVKHFPTNSVATSDSVIIKG 60 Query: 61 FKFSLNELLYTPFYYKQLQYQYLTPQFIFRCIQEANENNMSCYYCYTKKKEHNGLNIDIF 120 ++F+L ELLY+PF+++Q Q QYL P F+ +CI EA +N C YC K+ N LNI+IF Sbjct: 61 YRFTLTELLYSPFHFQQPQCQYLLPSFVLKCIDEATKNKTICKYCII-NKDDNSLNINIF 119 Query: 121 IPTANSKSYIVIGLRIKDFWKQSFKV 146 +PT + K Y++IGLRIK FW F++ Sbjct: 120 VPTFDLK-YLIIGLRIKHFWSSKFQI 144 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.325 0.139 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,267 Number of Sequences: 156 Number of extensions: 1238 Number of successful extensions: 10 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 1 length of query: 148 length of database: 48,119 effective HSP length: 55 effective length of query: 93 effective length of database: 39,539 effective search space: 3677127 effective search space used: 3677127 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634776|ref|NP_039069.1| ORF FPV106 hypothetical protein [Fowlpox virus] (71 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,173 Number of Sequences: 156 Number of extensions: 518 Number of successful extensions: 5 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 71 length of database: 48,119 effective HSP length: 47 effective length of query: 24 effective length of database: 40,787 effective search space: 978888 effective search space used: 978888 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634777|ref|NP_039070.1| ORF FPV107 variola B22R gene family protein [Fowlpox virus] (1777 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150573|ref|NP_150568.1| LSDV134 variola virus B22R-like pro... 481 e-138 >gi|15150573|ref|NP_150568.1| LSDV134 variola virus B22R-like protein [lumpy skin disease virus] Length = 2025 Score = 481 bits (1239), Expect = e-138 Identities = 322/1079 (29%), Positives = 531/1079 (48%), Gaps = 87/1079 (8%) Query: 730 SRTYSGGTRSNRLRSESGYQGDTSRSDMEGSVYQPSIKELDIKSKKVYREKMI---ETAK 786 + TY+ ++N G+ S + + + IK K R K + T Sbjct: 893 ANTYNNNDKANNKDKNKGF------SYLNNDIQKDEKNVNKIKKSKKGRTKRLTELSTDN 946 Query: 787 KFD---KTAALTSATQLIVQGMISARIRNENFKNVDFNEAETIFEAVSASFSSVGNAMLS 843 K + KT A++S IS+ + N + + TI V++ S +G + Sbjct: 947 KMNNMIKTIAISSYLSS-TNSRISSIMAQANHQPKEL----TIVNIVTSVLSQIGGTLAM 1001 Query: 844 AGIIASPTVAFAGMGLSFISGLLDLGNHLYQLITGKPKPEDPLVKKFNQYNELVSDSTRM 903 AG SP A AG+ + ISGL+D +Y L++G+ +P+DP ++KF+ Y VS T Sbjct: 1002 AGS-GSPKAAAAGLVIQGISGLIDAATSIYFLLSGQEQPKDPAIEKFSNYASYVS-KTDA 1059 Query: 904 GVRTCLMPGSDLVIYLAYRNDSSFKPSLEKLNLHFIDVPESIVYYLNTSNIIMDYSLTIA 963 G R C+MP SD+ I LAYR+ S+ EK + D+ S VYYL S I +T+ Sbjct: 1060 GARVCMMPDSDITITLAYRH-SNMNVEAEKTRGEYTDIIPSTVYYLKNSQISYTVKVTLV 1118 Query: 964 CPIGYLRSPDLDVNAFVTL-KDVTEEVRFYQVTRLGAMLSKSPIVRFTCGREVTLTLKPF 1022 CPIG LR + D+N + TL ++ + V+FY V + +LS P V FTCG E + PF Sbjct: 1119 CPIGQLRLLEADINTYATLTREDKDGVKFYHVFGILELLSYHPNVTFTCGNEPGVIFIPF 1178 Query: 1023 EIPLSNMQLLKMATPGEPEESKSMPSNVCDLFPLKNFYLLVKGCPFDNSKVAIAYTTCSV 1082 E LS+MQLL+++TPGEP E+++M S+VCD++PLK FY+L CPFD S+ ++AY TCS Sbjct: 1179 EQKLSDMQLLRISTPGEPREAEAMSSDVCDIYPLKKFYVLAGNCPFDMSRKSVAYVTCST 1238 Query: 1083 LLRMSIWEEENRRWLLENPFDNKNRFK-QLFTFNRFNFN--DTVIKPNEISGHAKFCANR 1139 LLRMS +E E +RW+L NPF N N QLFTF +++F+ IK N IS C+ Sbjct: 1239 LLRMSTYEHEKQRWILMNPFSNGNEDNIQLFTFKKYDFSAEKDKIKLNSISHSDTICSQS 1298 Query: 1140 QSNHCHWFDVMVLDDISSCENRVRKIYVEIYLFSGSRGFTSFVLTCPSGSTPVAVGNKDG 1199 ++ C W D M+L+D++SC +R+RK+ VE+ S +G+ +FVLTCP GSTP + N Sbjct: 1299 DTSTCFWADAMILEDVTSCNSRIRKLSVEMSTVS-EKGYNNFVLTCPYGSTPFYISN-GS 1356 Query: 1200 IIELPFSDLFTVKMFASVKKTNIGVFCVNDYDTRYRSDMIILKFVEPNFPKDVLPLDTYD 1259 II +P + T FAS + C+++ + Y+SD++ + F + N L + Sbjct: 1357 IISIPMNTRRTSVRFASKHNNVALISCIHNSNPAYKSDIVEVMFKQSNMSDMYLDFKYFK 1416 Query: 1260 GQNKLFNELVYNHMPWRSRTCSNIVGSKSCISFHGRIDIWNPNYVVDTEIGSEIMITEKY 1319 + LF+ + MP RS+TC + +C +++ + + V + + Y Sbjct: 1417 DRKYLFDSF-SDIMPKRSKTCKRASENSNCKNYYYIKHVPEIEFKVYVAKLPMVRLGTSY 1475 Query: 1320 DPDIATLSSISKSSHYFPYKLQLKYSLSGLGKVYDTADRFWQDAKKKFRTFSSMLIVLVP 1379 + ++ K + YF + + S L VY + FW+ A +K RTFSS+ + Sbjct: 1476 S-GVLNYQTLEKVNKYFSTPISISVDASTLSDVYKNQEHFWKFAMEKKRTFSSITATIFA 1534 Query: 1380 CNMIQNIIKYHSQRISILQYQQALTNKYGDGKKYVFTTLSGSK----------------- 1422 C+++ + ++++ + + YG KY++ GSK Sbjct: 1535 CSVV-------AGKVNVNMGVKGSHDYYGRSGKYIY---MGSKDFASNDKIYFKFIPDKA 1584 Query: 1423 ----------CTAELDLTTKLLSLQCEEFSLPRSTL--PQYEGICSITISSKDHCGTTLD 1470 C LDL T+ +++ C E ++P+ P +C + +S+DHC + + Sbjct: 1585 EYRLKDTYGECEIYLDLKTRRVNVNCPELTIPQHPFDSPDVNSLCVLVATSRDHCAISEE 1644 Query: 1471 S----SKYRGYSSSHANTPRRCDMYKYPSISMYVPDNYCGYGSLYGTYYPPQYEACKSYI 1526 + + G SH D + Y DN+C Y G Y+PP Y+ C S + Sbjct: 1645 NWRSYDRTHGVGYSHEYVDAEFDSCRKSHGPTYPVDNFCFYWCA-GIYWPPDYDPCASSM 1703 Query: 1527 HIYYSDTWIEKEILDEPPYAFNFKYDTSKNEYIDSTISGKLRGLYQAYKELYEYTDGTLP 1586 + YS + E I+ PPY F Y+ KNEY+ + KL+ LY+ Y L Y+ + Sbjct: 1704 VLGYSPIFPENRIV-HPPYIKEFGYEPGKNEYVKRELYNKLQNLYEKYNMLVLYSMNPVV 1762 Query: 1587 KSINRLAGALSDKGRDIASVNIDSSVLEVAYLADMEKMAQLEEKIKDLSKEVLISTLSDN 1646 + N LA +++ + R+I + +S+ ++ A + K +++ +I++ + + TLS + Sbjct: 1763 EMSNGLAKSMTSEAREIFRLIANSNEMQKAKEENDMKAEKVKMEIEETLNNIYVDTLSYS 1822 Query: 1647 DLYEIIMKEQYGMCCLLDFKLNTSTKVYPNCN---YTCGTLDDFIYEEDTGNTTEIT-VL 1702 + ++ CC+LD T VY + Y CG D++ N +T V Sbjct: 1823 ESTSLLRSAISTRCCVLD-----GTSVYKYFDLEYYLCGNYSDYLI-----NINNVTYVK 1872 Query: 1703 INGTHMDYDMFSVSEASVVTCLDDNVIPLSIGSARSEVEKNILLYSIELGLGSLMEELD 1761 IN + ++ D++ V VTC ++ ++ + + E I+ + E L + +E D Sbjct: 1873 INDSLIEEDIYLVRNIPQVTCFHITLVSVNNEEQQKKFETEIVTMAFEDVLTEIFDEYD 1931 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.317 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 203,195 Number of Sequences: 156 Number of extensions: 10474 Number of successful extensions: 60 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46 Number of HSP's gapped (non-prelim): 2 length of query: 1777 length of database: 48,119 effective HSP length: 75 effective length of query: 1702 effective length of database: 36,419 effective search space: 61985138 effective search space used: 61985138 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 99 (42.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634778|ref|NP_039071.1| ORF FPV108 Virion envelope protein [Fowlpox virus] (377 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150467|ref|NP_150462.1| LSDV028 putative palmitylated virio... 286 8e-080 gi|15150585|ref|NP_150580.1| LSDV146 phospholipase D-like protei... 148 3e-038 >gi|15150467|ref|NP_150462.1| LSDV028 putative palmitylated virion envelope protein [lumpy skin disease virus] Length = 370 Score = 286 bits (731), Expect = 8e-080 Identities = 157/367 (42%), Positives = 229/367 (61%), Gaps = 20/367 (5%) Query: 6 KPIPKADYQIVETVPQSLTAINSTNLSTYECFKRLIDLAKKEIYIATFCCNLSTNPEGTD 65 KP A ++VET+P++ + I + ++ T+ECF +I AKK I IA+FCCNL T+ G + Sbjct: 8 KPPSGAGCRLVETLPKT-SGITTQHMLTHECFDEIISQAKKNINIASFCCNLRTSEHGKN 66 Query: 66 ILNRLIDVS-SKVSVYILVDESSPHKDYEKIKSSHISYIKVDIGVLNNESVGNLLGNFWV 124 ILN+L + + S + V ILVD S +KD E++ S+ I Y+KV IG N+ V LLG+FWV Sbjct: 67 ILNKLKEAAASGIKVTILVDHQSGNKDEEELISNKIEYVKVKIGGDNDPGV--LLGSFWV 124 Query: 125 VDKLHFYIGSASLMGNALTTIKNMGIYSENNSLAMDLYFRSLDYKIISKKKCLF------ 178 D YIG+ASL G +++ IK +GIYS LA+DL R +K ++ +F Sbjct: 125 SDYNKCYIGNASLTGGSISNIKTLGIYSTYAPLALDLQRRFETFKALNNNSSIFRGIYIT 184 Query: 179 -FTRMATKYHFFKNHNGIFFSDSPEHMVGRKRTFDLDCVIHYIDAAKSTIDLAIVSLLPT 237 ++TKYH G+F SDSP+H++G RT D D V+ I++AK +IDL ++SL+P Sbjct: 185 CCLPVSTKYHINNPIGGVFLSDSPDHILGYSRTLDADVVLSKINSAKKSIDLELLSLVPV 244 Query: 238 KRTKDSIVYWPIIKDALIRAVLERGVKLRVLLGFWKKTDVISKASIKSLNELGVDHIDIS 297 R +WP I +A+I A + RGVK+R+L+G W K DV +S+KSL L + D++ Sbjct: 245 IREDLKTTFWPDIYNAIIGATINRGVKVRLLVGSWDKNDVYVMSSVKSLQSL-CSNNDLT 303 Query: 298 TKVFRFPVNSKVDDINNSKMMIIDGRYAHVMTANLDGSHFNHHAFVSFNCMDQQFTKKIA 357 K+F D NN+K+MIID +AH+ AN DG+H+ H+AFVSFN D + K ++ Sbjct: 304 VKIFH--------DTNNTKLMIIDNEFAHITPANFDGTHYLHYAFVSFNTNDNELVKMLS 355 Query: 358 EVFERDW 364 +FERDW Sbjct: 356 NIFERDW 362 >gi|15150585|ref|NP_150580.1| LSDV146 phospholipase D-like protein [lumpy skin disease virus] Length = 413 Score = 148 bits (373), Expect = 3e-038 Identities = 111/379 (29%), Positives = 192/379 (50%), Gaps = 30/379 (7%) Query: 15 IVETVPQSLTAINSTNLSTYECFKRLIDLAKKEIYIATFCCNL--------STNPEGTDI 66 IVET+P L + N+STY+ + +LI K+ +YIA+F +L T+ G + Sbjct: 12 IVETIPCDLDLLY--NVSTYDFWMKLISETKESLYIASFYWSLCDEDSKKDETSNNGKMV 69 Query: 67 LNRLIDVSSKVSVYILVDESS-PHKDYEKIKSSHISYIKVDIGVLNNESVGNLLGNFWVV 125 L LI ++S+ S+ I+V++S+ P +D + S I VDI N G L F + Sbjct: 70 LKELIKLTSRASLKIVVNKSNQPSEDLLLLSSYGAQVIYVDI---KNIFGGVLHTKFLIS 126 Query: 126 DKLHFYIGSASLMGNALTTIKNMGIYSENNS-LAMDLY--FRSLDYKIISKKKCLFFTRM 182 D+LH YIGSA++ +L+ +K +GI N+S L MDL F Y + C + + Sbjct: 127 DELHAYIGSANMDWRSLSQVKELGIGIYNSSCLVMDLIKIFNEYCYIGYTNVPCFWSSEY 186 Query: 183 ATKYHF------FKNHNGIFFSDSPEHMVGRKRTFDLDCVIHYIDAAKSTIDLAIVSLLP 236 Y+ ++ +F + SP + T DL ++ I A+ I +++++ +P Sbjct: 187 QLCYNIDNPLSLINSNYKMFIASSPPSLSKNNGTDDLYSLLSAIKNAEKFIYISVMNYIP 246 Query: 237 TKRTKDSIVYWPIIKDALIRAVLERGVKLRVLLGFWKKTDVISKASIKSLNELGVDHIDI 296 + ++WP I L R +++ + +++L+ FW T +I K +KSL ++ +I+I Sbjct: 247 VIYQNNKTLFWPDIDIELRRVAIDKKINIKLLVSFWDHTPLIMKGFLKSLKDINYKNINI 306 Query: 297 STKVFRFP---VNSKVDDINNSKMMIIDGRYAHVMTANLDGSHFNHHAFVSFNCMD---Q 350 + F P +N +N++K M+ D + A+V T+N G++F VS N +D Sbjct: 307 EVRFFIIPKNQLNIPYTRVNHTKYMVTD-KVAYVGTSNWSGNYFTDTCGVSLNIIDFNEL 365 Query: 351 QFTKKIAEVFERDWISPYA 369 K+ +F RDW S Y+ Sbjct: 366 AIRSKLENIFIRDWYSVYS 384 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,257 Number of Sequences: 156 Number of extensions: 2292 Number of successful extensions: 22 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 2 length of query: 377 length of database: 48,119 effective HSP length: 63 effective length of query: 314 effective length of database: 38,291 effective search space: 12023374 effective search space used: 12023374 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634779|ref|NP_039072.1| ORF FPV109 Virion release protein [Fowlpox virus] (630 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150466|ref|NP_150461.1| LSDV027 putative EEV maturation pro... 115 3e-028 >gi|15150466|ref|NP_150461.1| LSDV027 putative EEV maturation protein [lumpy skin disease virus] Length = 638 Score = 115 bits (288), Expect = 3e-028 Identities = 155/613 (25%), Positives = 251/613 (40%), Gaps = 62/613 (10%) Query: 27 HNVIFTTIDDETLIVITVNNVPLV---TRLITFEKI---TFFRSFXXXXXXXXXXXXXXX 80 H++I + ++I +NN+ LV T+L E + + + Sbjct: 20 HSIILARLGSGKGVIIYLNNLDLVRSVTKLSHLEIVGITKYAEPYFIDMHMHKLFIDEVD 79 Query: 81 XXXYFIPN-SLS-LLDILKKRAYDVELRDLSFAIMSEMNNDELRNSDIVSLNKWLHKHNL 138 +F P S+S L+DI+K+RA + + + S + +++ E +N + +N W+ + L Sbjct: 80 TETFFSPKTSISPLVDIVKRRALENDKINKS---VHKLHVFENKNISLSEINYWMCDNGL 136 Query: 139 LDYKLVLISDIDRRYKLYNKKN--TIID--VISVNGRNYNIWVKDVIEYYSPE-----YL 189 +Y+ V YK K N T+ID +I G++Y IWVK +Y PE Y Sbjct: 137 SNYRFV-------NYKNSKKGNDYTLIDEMIIGCIGKHY-IWVKQKKKYNRPELDILPYN 188 Query: 190 RWSIDIKRATESNNWLPYSQSINPLNENIYAFEFIATLERSNERL-NIGAIFLYPDIIIT 248 SI K+ NN +I P+ N I L S + + G F+ Sbjct: 189 VKSIASKKLWSKNNIYDEVVTIIPIIIN----SIITPLGPSIYMMTSFGKSFI------- 237 Query: 249 GRNNEDIIEKFLDQLEEVIYKKNSDSIVLTGYHLTFLENTILERYISKYKDWIFTCNRLV 308 N++++I FL L+E I N + L G+ + +L+ K W F N + Sbjct: 238 NFNSKELILCFLKWLKETILI-NIKTAFLVGFLSNVFDFLLLKASWPKNIGWNFIGNDYI 296 Query: 309 HCKTGTEVFLFDAAIFFPSSNKKGYVKHWTGKKLNF--KNFFQKDSQLEKYINNNSVA-E 365 G ++ L D A F Y K W KK K+F ++ K +A E Sbjct: 297 VSDDGFKLILVDIANFSCKMEISDYFKQWNDKKKIIIPKDFITEEEAKCKIKALEKMALE 356 Query: 366 RIYYLQSSLHKHISCLIE-IFELNGFDFN-FSGLLDILIFSIRVKNNNGNYYYPKHSSAV 423 + L S++K L I+ N F FN + I + N YYP V Sbjct: 357 SVLVLYDSINKQYDVLNNLIYPFNMFSFNRIEDIFLTKIIQTSLSKVNNFMYYPLEHDTV 416 Query: 424 NLMLXXXXXXXXXXXXXXXXXXXLVFN--SIFPLIMEGYYPEGKPYYTKTP--KEGYLSI 479 ++ ++F SI +I G YP G P Y ++ L I Sbjct: 417 RFIMQLIRFKNVKTVNYSPKKKIVIFKVKSILDIISLGRYPIGFPIYKRSIDINNNNLYI 476 Query: 480 CLCDVEISNDIKNPILYCKENKSARKFTGVFTSVDIDTAVKLRGYKIKILECIEWPNKIK 539 LC V +N++K PI+ + F TS+DI K+ GYKIK L +EW N Sbjct: 477 ALCKVSKNNNVKIPII--DDELETSVFFTPLTSIDIKLMRKIGGYKIKELGVLEWEN--- 531 Query: 540 LFDNICYLNKLFIEHQDYTHDEKSLQGYLFSYLLKGNVTEDVLAMKSCRNNLSII--SFI 597 +I + N F++ D H ++ L + Y++ N + + NN ++ +F Sbjct: 532 ---SITFHNDDFMKTID--HIKEILSDDIVDYIVNNNELLEHYENNTTLNNYLLLFKAFS 586 Query: 598 ISYCRNYTYKLLE 610 ISYCR + L++ Sbjct: 587 ISYCRFNIHSLIQ 599 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.141 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,450 Number of Sequences: 156 Number of extensions: 5094 Number of successful extensions: 35 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 1 length of query: 630 length of database: 48,119 effective HSP length: 67 effective length of query: 563 effective length of database: 37,667 effective search space: 21206521 effective search space used: 21206521 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634780|ref|NP_039073.1| ORF FPV110 [Fowlpox virus] (451 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150465|ref|NP_150460.1| LSDV026 hypothetical protein [lumpy... 47 1e-007 >gi|15150465|ref|NP_150460.1| LSDV026 hypothetical protein [lumpy skin disease virus] Length = 302 Score = 47.0 bits (110), Expect = 1e-007 Identities = 50/216 (23%), Positives = 93/216 (42%), Gaps = 14/216 (6%) Query: 108 KYFNVSEVSILQVSHGNDMMNIDKYVDGSFDYIAVLCLKNSGRSVIMLNHCNKQHVMQDN 167 ++F V ++++ HGN + S + C+KN G S + + + D Sbjct: 88 EFFTVIGSYLVKLKHGNAFFLNESTFSNSV--VITACVKNKGISGLFIPDTTFLKINIDE 145 Query: 168 FCLIFRSFY-GINILTQIIGESVYLLVKLSPSDLFKIRWSSVIDSN-----RFMGKKFYI 221 I F G+N L QI GES+YL+ LSP +L + N I Sbjct: 146 GDFIMSGFLNGVNFLPQIGGESIYLVTILSPKELSITEKAFFYKKNNEETLNITSNIISI 205 Query: 222 RNLQEDACIEKMKNMEKDIYKNIEFIIINSVLLEDLKSRLDITRELNHTIDKMFN-HNNN 280 R L+ + K+ ++K + K I N+ ++ D + L+ ++ K + ++ Sbjct: 206 RRLKIIELVNKIIKLKKVMKKENNCYIPNNFVIYD--TILNKNNNFLYSFKKKYKIDDDE 263 Query: 281 TLFSDIIKLSEEI---IDKDFKNMEKMSDSVLADVK 313 TL+ I L EI +D + K+ + +++ ++ VK Sbjct: 264 TLWEKITNLFLEIDKLLDYNIKHYQLINEYIINKVK 299 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.137 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,530 Number of Sequences: 156 Number of extensions: 3886 Number of successful extensions: 24 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 1 length of query: 451 length of database: 48,119 effective HSP length: 65 effective length of query: 386 effective length of database: 37,979 effective search space: 14659894 effective search space used: 14659894 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634781|ref|NP_039074.1| ORF FPV111 Serine/threonine protein kinase, virus assembly [Fowlpox virus] (444 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150464|ref|NP_150459.1| LSDV025 putative ser/thr protein ki... 420 e-120 >gi|15150464|ref|NP_150459.1| LSDV025 putative ser/thr protein kinase [lumpy skin disease virus] Length = 447 Score = 420 bits (1080), Expect = e-120 Identities = 216/427 (50%), Positives = 294/427 (68%), Gaps = 8/427 (1%) Query: 20 TTILGDTIQFQFIYENIDNKEHISLPKIKIFKYFRDKISFETLDRIIKNDYINPSYFQLK 79 TT+LGD I F ++ +D + S P +++ +YF+ K + ETL++I +N+YINPS+FQ K Sbjct: 24 TTVLGDDIYFDYVISQLDIYQSWS-PNVRLIRYFK-KFTKETLNKIAENEYINPSFFQQK 81 Query: 80 DKKFCAHNRDFYHLSTGGYGIIFRMEKYVVKFVFEDGSKKYKPMEVTSEFTIPRFLYNNL 139 DK+F N DFYH+STGGYGI+F+++KYVVKFV+E +K+Y P+E T+E+TIP+FL+NNL Sbjct: 82 DKRFYPINDDFYHISTGGYGIVFKIDKYVVKFVYEP-NKQYSPIETTAEYTIPKFLFNNL 140 Query: 140 KGDERKFIVCAIAMGINFKIDFLRTIYYNTMSLMSALFNIMEGEPLE-NKYSHRKVLRYF 198 KGDE+K IVCA AMG+NFK+ FL +Y + ++ L M+ + L + +SH+ L+ F Sbjct: 141 KGDEKKLIVCAWAMGVNFKLTFLYNLYKRVLYMILLLIQTMDDQKLSISNFSHKYFLKSF 200 Query: 199 AKYKQSNDFVKLISQFXXXXXXXXXXXXXXXXXXXXXXERSRRSNGYFNRGNIIIFPLAK 258 + K FVKL+S F E +RSN ++RGNIIIFPLAK Sbjct: 201 NEKKGDVKFVKLLSYFYPIVIQSNVNVINYFTHMFHFFEHEKRSNYLYDRGNIIIFPLAK 260 Query: 259 CSAEKITPDNYAQYGFSSIVEYTKFMFLQIALLYIKIYELP-CSNFVHLDLKPDNILIFD 317 S++K++ + GF S+VEY KF+FLQ+ALLY+KIYELP C+NF+H+DLKPDNILIFD Sbjct: 261 FSSDKVSEKMAIELGFKSLVEYIKFIFLQMALLYVKIYELPCCNNFLHVDLKPDNILIFD 320 Query: 318 SKEPINIYVGDMHYVFKEPIRCTLNDFDFSQISEIIPNKKAVTAINKEQNWYYDFHFFSH 377 S E I I + + Y+F EPI+ LNDFDFSQ++ II NKK I E NWYYDFHFF H Sbjct: 321 SDESIKISLNENTYIFNEPIKACLNDFDFSQVANII-NKKIKNNIKVEHNWYYDFHFFIH 379 Query: 378 VLFKVYPEISKDEDFTSLLNEFTI-CDKYICENFRLQVNKLPSISFLINIVS-RDIFSKW 435 L K YPEI D++F + L EF I C+K C+ FRL+++ L ISFL I+S ++IFS W Sbjct: 380 TLLKTYPEIETDKEFYNTLEEFIICCNKNTCDKFRLKISILHPISFLEKIISKKNIFSTW 439 Query: 436 IDGKSTS 442 I+GK S Sbjct: 440 INGKPLS 446 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.325 0.142 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,348 Number of Sequences: 156 Number of extensions: 3525 Number of successful extensions: 27 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 1 length of query: 444 length of database: 48,119 effective HSP length: 65 effective length of query: 379 effective length of database: 37,979 effective search space: 14394041 effective search space used: 14394041 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634782|ref|NP_039075.1| ORF FPV112 Putative membrane protein [Fowlpox virus] (213 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150463|ref|NP_150458.1| LSDV024 hypothetical protein [lumpy... 119 9e-030 gi|15150499|ref|NP_150494.1| LSDV060 putative myristylated IMV e... 56 9e-011 >gi|15150463|ref|NP_150458.1| LSDV024 hypothetical protein [lumpy skin disease virus] Length = 216 Score = 119 bits (297), Expect = 9e-030 Identities = 71/218 (32%), Positives = 113/218 (51%), Gaps = 9/218 (4%) Query: 1 MENQQVISNLYYLFSEKYLEKLNQHPDTSNVRCGIHIGYLSGEAKNCIVSIINACNSNEQ 60 MEN + LY LF E+YL+ L+ + N CGIHI + G K C + IIN C +++ Sbjct: 1 MENHFQVDTLYNLFIERYLQNLSLYSVPVNTTCGIHISEIKGTLKGCKLKIINLCIDDKE 60 Query: 61 KSFQLLIESLIETIENLPEKQQKEIAKSIGINIDDYKAGKKTELQQHCEAYANLTQHIDI 120 SF LLI++ E L + ++ E+A +GI++D+ E+ + C + A +T IDI Sbjct: 61 LSFYLLIKTFKEFANTLSQNEKYELANEVGIDLDNQDKNYIPEIIRKCTSSAAVTNVIDI 120 Query: 121 QHFNIGTCYSPNDKYTDIKIINTGSALSNCGVEIIL----NKIKTNNPIVPIDNKLSMES 176 Q +IG C +PN K ++IIN+G++ +NC + I+ N+ NN IDN++ + Sbjct: 121 QTLDIGECIAPNGKNILLQIINSGTSEANCVMNTIMKSMSNRYTINN---YIDNRIPFIN 177 Query: 177 FSIKWFXXXXXXXXXXXXXXX-XXXRTVRIKYTYGVYI 213 + WF R + IKY YG ++ Sbjct: 178 -DVHWFIFFVLIIFIIFLLGLCSIKRKINIKYKYGSFL 214 >gi|15150499|ref|NP_150494.1| LSDV060 putative myristylated IMV envelope protein [lumpy skin disease virus] Length = 245 Score = 55.8 bits (133), Expect = 9e-011 Identities = 34/151 (22%), Positives = 75/151 (49%), Gaps = 8/151 (5%) Query: 15 SEKYLEKLNQHPD-TSNVRCGIHIGYLS-GEAKNCIVSIINACNSNEQKSFQLLIESLIE 72 +EK KL Q + T+ +C I IG + + K C V++ N C+S + ++++ E Sbjct: 15 NEKISSKLEQTAEATAEAKCDIEIGSIVFRQNKGCNVTVKNLCSSKAESQLDAILKAATE 74 Query: 73 TIENLPEKQQKEI------AKSIGINIDDYKAGKKTELQQHCEAYANLTQHIDIQHFNIG 126 T ++L Q+ + A +I +++ +T ++Q C + + + + I + I Sbjct: 75 TYDSLTPDQKAYVPGLMTAALNIQTSVNTVVKDFETYVKQKCTSKSVIDNKLKIHNIFID 134 Query: 127 TCYSPNDKYTDIKIINTGSALSNCGVEIILN 157 C +P T+ + IN+G++ C ++ +++ Sbjct: 135 ECAAPTGTTTNFEFINSGTSQGICAIKTLMD 165 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.317 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,971 Number of Sequences: 156 Number of extensions: 1214 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 2 length of query: 213 length of database: 48,119 effective HSP length: 58 effective length of query: 155 effective length of database: 39,071 effective search space: 6056005 effective search space used: 6056005 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634783|ref|NP_039076.1| ORF FPV113 hypothetical protein [Fowlpox virus] (66 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.311 0.133 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7980 Number of Sequences: 156 Number of extensions: 319 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 66 length of database: 48,119 effective HSP length: 42 effective length of query: 24 effective length of database: 41,567 effective search space: 997608 effective search space used: 997608 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634784|ref|NP_039077.1| ORF FPV114 HAL3 domain [Fowlpox virus] (183 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,758 Number of Sequences: 156 Number of extensions: 775 Number of successful extensions: 3 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 183 length of database: 48,119 effective HSP length: 57 effective length of query: 126 effective length of database: 39,227 effective search space: 4942602 effective search space used: 4942602 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634785|ref|NP_039078.1| ORF FPV115 Ankyrin repeat gene family protein [Fowlpox virus] (542 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 67 1e-013 gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 65 4e-013 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 54 1e-009 gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 53 2e-009 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 67.0 bits (162), Expect = 1e-013 Identities = 109/481 (22%), Positives = 184/481 (37%), Gaps = 136/481 (28%) Query: 173 MVELLLSYGAKTNLHTRYEDS---IFMCA------------IKSNNVKTAKIISDLYN-- 215 ++EL+ SYG N +DS +F+ + +++NN+ + SD YN Sbjct: 93 IIELITSYGVSFNDEPIKKDSYPILFLVSNEKFNHISLYEYLENNNINFNIVRSDGYNLL 152 Query: 216 --YKNDINNI-----------------------LKTIQLY-------NADMLLFLIEIGL 243 Y NNI L + +Y N ++ FLI+ G Sbjct: 153 HLYLESCNNIKLSVLKLLIKNNVNVNGLTRFRNLTPLHIYLCKGYCLNYSVINFLIDTGS 212 Query: 244 DINTKDKKGKTALHYA----CNSINCIETVK-EIMKYGADINVKDREGLTPLHSACKYGD 298 +IN GK L Y+ C++ +++ +++K GADIN K GLTPL Y D Sbjct: 213 EINC----GKETLLYSFFTTCDNEKVFKSLTTKLIKKGADINQKSESGLTPLMGFVAYSD 268 Query: 299 LKLS---KLLIEYGA---------------------DVKVKTTSTVLNLAVESGNVELVK 334 L K ++ G DV + T ST+L + +V Sbjct: 269 LATPNNIKFILSCGGNQLVVNPQSNETLLHIYLRRYDVSLSTISTLLESGININSVNFKN 328 Query: 335 FL-----IEKNPEFITSDYLSLSL----------AIRCKDINIVLLLLDAGMDVNSSKCI 379 + ++KN E ++ D + + C I+ + L+ +N+S Sbjct: 329 YTPLHVYVDKNIEHLSLDVVDYLIYKGATTERVNRYDCFAKTILEVFLEKNKFLNNSSRY 388 Query: 380 S------------------TPLHLGVILGNSNIVKLLLDHGANINAIDKYGET----PLE 417 TPL V + N N L G++IN I + GET P+E Sbjct: 389 FINYILKYFPINEKDLYGFTPLLSSVYVNNVNFFNYFLRLGSSINVISEIGETCVSIPIE 448 Query: 418 AANKR---INIDYAELYKSNRFIIKYL---VFLSRYDYKIKNNIGFIKNMYIIDKDE--- 468 KR I +D K+ + ++YL F +R +K+ + IK ++ +D DE Sbjct: 449 NQYKRFLKIVLDSKPNIKTIKATLRYLSDKEFNTRTKFKLMKHC--IKYLFTLDPDEYKN 506 Query: 469 ---TLSCFR---NMCETELDKISSIKIGQYSLYSLLASDNDVKEYICKNRQEITQKIIDN 522 S F+ N C+ ++ + S + S+Y L+ + N N E+ + + N Sbjct: 507 HRFIFSKFKSVVNECQKDIITMKSTFLKTVSVYDLIFNKNGTMHKRYLNTMEVRKYLKSN 566 Query: 523 L 523 + Sbjct: 567 I 567 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 65.5 bits (158), Expect = 4e-013 Identities = 90/396 (22%), Positives = 165/396 (40%), Gaps = 92/396 (23%) Query: 210 ISDLYNY----------------KNDINNILKTIQLY------NADMLLFLIEIGLDINT 247 I D+YNY N+I N Q Y + D++ LI +G ++N Sbjct: 3 IDDIYNYIAFRGNPKLSIIKSCDPNEIVNEYSLFQKYLQRDSPSVDIVKLLINLGGNVNG 62 Query: 248 KDKKGKTALHYACNSI----NCIETVKEIMKYGADINVKDREGLTPLHSACKYGDLKLSK 303 + + T L ++I + ++ VK +++ AD+N K+ +G TPL+ G +K +K Sbjct: 63 LENEYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNK 122 Query: 304 LLIEYGADVKVKTT------STVLNLAVESG----NVELVKFLIEKNPEFITSDYLSLSL 353 ++ Y + +TT T+L + V++ ++E++K L+E + T Sbjct: 123 EILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIIDIEIIKILLESGIDINTISNKEKYD 182 Query: 354 AIRCK--------DINIVLLLLDAGM-----DVNSSKCISTPLHLGVILGNSNIVKLLLD 400 + C D NI+ L +D G D + K + L+ ++ N + K +LD Sbjct: 183 TLDCYFKYNIDRIDANILKLFVDNGFIIKKEDKSHKKKLMEYLN-SLLYDNRRVKKNILD 241 Query: 401 H---GANINAIDKYGETPLEAANKRINIDYAELYKSNRFIIKYLVFLSRYDYKIKNNIGF 457 N+N +D+ G PL Y + +NR I +Y++ ++ NI Sbjct: 242 FIFTYINVNQVDELGFNPL----------YYSVSHNNRTIFEYII-------QLGGNINC 284 Query: 458 IKN-----MYIIDKDETLSCFRNMCETELDKISSIKIGQYSLYSLLASDNDVKEYICKNR 512 I ++ ++ +L F ++ E + +K K Y+ Y L DV ++I + Sbjct: 285 ISELGDTLLFKAFENRSLFIFNSILEKKPNK----KTISYTYYKLRKHLLDVGDFINQIE 340 Query: 513 QEITQKII-------------DNLKDIIIYRSFIEK 535 +I +K I + K I + FIEK Sbjct: 341 FDIIKKFIAHVILYVKNFSVRNRTKAFIYFDDFIEK 376 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 53.5 bits (127), Expect = 1e-009 Identities = 78/337 (23%), Positives = 139/337 (41%), Gaps = 53/337 (15%) Query: 142 MDLLLRYGALPNSRK---DGLLPLYHAAAAGNTEMVELLLSYGAKTNLHTRYEDSIFMCA 198 ++LL+R G N + +L LY + +++ LLL GA N + Y+ SI Sbjct: 19 VELLIRTGFDVNEENCDNESILLLYLKRKDVSIDILRLLLENGADVNYRSYYDTSITSVI 78 Query: 199 ----IKSNNVKTAKIISDLYNYKNDIN----NILKTIQLY-------NADMLLFLIEIGL 243 + SN +K +II L + DIN N + TI + N +M FL+ G+ Sbjct: 79 RNYELDSNTIK--QIIILLLKFGADINLKPFNGVYTIMPFIYNFHINNCNMFKFLLSKGI 136 Query: 244 DINTK--DKKGKTALHYACNSINC-IETVKEIMKYGADINVKDREGLTPLHSACKYG--- 297 + D +G H S + I+ +K ++ + + K +GLTP++ + Sbjct: 137 YVKNDIIDSRGFNLFHMYFESFSVKIDVIKILLSFNVGLFEKSFKGLTPMNIYFDHFIDV 196 Query: 298 -DLKLSKLLIEYGADVKVKTTSTVLNLAVESGNVELVKFLIEKNPEFITSDYLSLSLAIR 356 LK+ K LI G +++ +G+ L++ + N + L+ ++ Sbjct: 197 ISLKVIKYLISKGVNIETNN----------NGSKSLLETFLRSNKILSRKCFKVLNFILK 246 Query: 357 CKDINIVLLLLDAGMDVNSSKCISTPLHLGVILGNSNIVKLLLDHGANINAIDKYGETPL 416 +N V + G++ P+ + N + LL G +I + K G T + Sbjct: 247 YVKLNKVD---EKGLN---------PILISAKADNYDAFNHLLKLGDDIYNVSKKGNTVI 294 Query: 417 EAANKRINIDYAE---LYKSNRFIIKY-LVFLSRYDY 449 A KR NID + +++IK + S Y Y Sbjct: 295 TYAIKRENIDILNRVLAIEPKKYLIKQTFEYFSNYGY 331 Score = 44.7 bits (104), Expect = 6e-007 Identities = 59/252 (23%), Positives = 115/252 (45%), Gaps = 36/252 (14%) Query: 233 DMLLFLIEIGLDINTKDKKGKTALH-YACNSINCIETVKEIMKYGADINVKDREGLTPLH 291 D + LI G D+N ++ ++ L Y I+ ++ +++ GAD+N + T + Sbjct: 17 DAVELLIRTGFDVNEENCDNESILLLYLKRKDVSIDILRLLLENGADVNYRSYYD-TSIT 75 Query: 292 SACKYGDL------KLSKLLIEYGADVKVKTTSTVLNLA-----VESGNVELVKFLIEKN 340 S + +L ++ LL+++GAD+ +K + V + N + KFL+ K Sbjct: 76 SVIRNYELDSNTIKQIIILLLKFGADINLKPFNGVYTIMPFIYNFHINNCNMFKFLLSKG 135 Query: 341 PEFITSDYL-------------SLSLAIRCKDINIVLLLLDAGMDVNSSKCISTPLHLG- 386 ++ +D + S S+ I D+ +LL + G+ S K + TP+++ Sbjct: 136 I-YVKNDIIDSRGFNLFHMYFESFSVKI---DVIKILLSFNVGLFEKSFKGL-TPMNIYF 190 Query: 387 ---VILGNSNIVKLLLDHGANINAIDKYGETPLEAANKRINIDYAELYKSNRFIIKYLVF 443 + + + ++K L+ G NI + ++ LE + I + +K FI+KY V Sbjct: 191 DHFIDVISLKVIKYLISKGVNIETNNNGSKSLLETFLRSNKILSRKCFKVLNFILKY-VK 249 Query: 444 LSRYDYKIKNNI 455 L++ D K N I Sbjct: 250 LNKVDEKGLNPI 261 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,212 Number of Sequences: 156 Number of extensions: 4280 Number of successful extensions: 55 Number of sequences better than 1.0e-005: 4 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 13 length of query: 542 length of database: 48,119 effective HSP length: 66 effective length of query: 476 effective length of database: 37,823 effective search space: 18003748 effective search space used: 18003748 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634786|ref|NP_039079.1| ORF FPV116 CC chemokine gene family protein [Fowlpox virus] (120 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,920 Number of Sequences: 156 Number of extensions: 582 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 120 length of database: 48,119 effective HSP length: 53 effective length of query: 67 effective length of database: 39,851 effective search space: 2670017 effective search space used: 2670017 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634787|ref|NP_039080.1| ORF FPV117 [Fowlpox virus] (440 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150493|ref|NP_150488.1| LSDV054 hypothetical protein [lumpy... 197 5e-053 >gi|15150493|ref|NP_150488.1| LSDV054 hypothetical protein [lumpy skin disease virus] Length = 437 Score = 197 bits (501), Expect = 5e-053 Identities = 132/420 (31%), Positives = 215/420 (50%), Gaps = 20/420 (4%) Query: 28 IYVDFLGLFMAIAYSVTSTAMLHHIIKEKFKFIHSI---ADNVTVFVDRGSISLKTSLRE 84 I+VD + F++IA+ V + L+ E F S +T+FVDRG I +K SLRE Sbjct: 30 IFVDTMSFFVSIAHCVNNLDDLY----ESFMLYISQWKKQGKITLFVDRGVIPIKESLRE 85 Query: 85 KRKQSLKNQYKRKQEELKNLEIAIDNLSVDDEMYEEQKESLFSKIDKNSYYMFLADKKNM 144 KR+ + +N K+ E++ L I NL+VDD MY+E K L KI K + +LA+ + Sbjct: 86 KRRNASRNTSKKNVLEIEKLNNLIKNLNVDDMMYDEIKTDLELKIKKLEFNNYLANHVQL 145 Query: 145 EAIITDVLASL-KNTEIYYCDHIDAEFMMCCRAREYYTNNGTWPSILSSDQDTICLVCVD 203 + + + L L + I YCD IDAEF+MC A++ WP ++S+DQDT+ D Sbjct: 146 KDALDNSLKLLGSDVTIIYCDGIDAEFVMCQEAKKIAYMTEKWPLMISTDQDTLLFSSCD 205 Query: 204 TQEKILYDTKSVYKLSPNKYTSYLTKLIVLTNGCDFFRGLYGISINKDNYMRYELFTEFN 263 K + +Y P T YL+KL+ LTNGCD+F+GLYG SI + +LF +F Sbjct: 206 DLPKNIRTMNQIYSFIPCAKTRYLSKLVALTNGCDYFQGLYGFSITAKSLKSIKLFDDFT 265 Query: 264 RENAFRSIAHKNYSLNNSNTDENIDEISTNIDVIFDFINHYTSLNEDAYKFEDLPDIRVK 323 +N +S+ +NYS +TD I N + I FIN Y+ LNE Y I V+ Sbjct: 266 IDNVIKSLIIRNYS--RKDTDRYI-----NAEKIIHFINKYSCLNESIYNEVPPESITVQ 318 Query: 324 DFLDVMVRSKWYEAKNKYDLGSDILQNIYNVYKVHRRNYEKEKETNILKMIESYKYRXXX 383 +F+ + KW + + G + ++ V K +++ ++ + + + +I + + Sbjct: 319 EFIFSALYHKWKKFDDSLLKGISLCCSLICVLK-PKKDIKRNEISKLCNIINNDSNKKSS 377 Query: 384 XXXXXXXXXLLGIE-TSDSICVLGILAPSELYIGFEGRFYFNKTSIIKSSPK---LININ 439 + G + + V GI ++ + ++ FYFN +II+++ K +INI+ Sbjct: 378 LNNIKSVIDIFGYDLNKNKNIVYGISKLKKIMLCYDDLFYFNNENIIRNNLKKNGIINIS 437 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,209 Number of Sequences: 156 Number of extensions: 3375 Number of successful extensions: 30 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 1 length of query: 440 length of database: 48,119 effective HSP length: 65 effective length of query: 375 effective length of database: 37,979 effective search space: 14242125 effective search space used: 14242125 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634788|ref|NP_039081.1| ORF FPV118 RNA polymerase subunit, RP07 [Fowlpox virus] (63 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150494|ref|NP_150489.1| LSDV055 RNA polymerase subunit [lum... 95 3e-023 >gi|15150494|ref|NP_150489.1| LSDV055 RNA polymerase subunit [lumpy skin disease virus] Length = 63 Score = 94.7 bits (234), Expect = 3e-023 Identities = 44/63 (69%), Positives = 51/63 (80%) Query: 1 MVFPLVCSTCGRDLSEARYRLLVEQMELKKVVITYSRKCCRLKLSTQIEPYRNLTVQPSL 60 MVF LVCSTCGRD+SE RY LL++++ +KKV+ CCRLKLSTQIEP RNLTVQP L Sbjct: 1 MVFQLVCSTCGRDISEERYALLIKEVNIKKVLSRVKNSCCRLKLSTQIEPQRNLTVQPLL 60 Query: 61 DIN 63 DIN Sbjct: 61 DIN 63 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.326 0.138 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5880 Number of Sequences: 156 Number of extensions: 188 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 1 length of query: 63 length of database: 48,119 effective HSP length: 39 effective length of query: 24 effective length of database: 42,035 effective search space: 1008840 effective search space used: 1008840 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634789|ref|NP_039082.1| ORF FPV119 [Fowlpox virus] (188 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150495|ref|NP_150490.1| LSDV056 hypothetical protein [lumpy... 83 6e-019 >gi|15150495|ref|NP_150490.1| LSDV056 hypothetical protein [lumpy skin disease virus] Length = 174 Score = 82.8 bits (203), Expect = 6e-019 Identities = 52/169 (30%), Positives = 82/169 (47%), Gaps = 9/169 (5%) Query: 1 MDISLF--DYVAPGAVILSQSNHSIVNFFNPSEEKHSSLYFGYGIVDFIIKNDINFSING 58 MD + F +Y GAVI S+ +FNPSE+KH+++Y G N + ++ Sbjct: 1 MDPATFIKNYAPKGAVIFINYEFSLTEYFNPSEDKHAAIYIGSDCTS----NHVKMFLSC 56 Query: 59 LNNFTNYIIEFN-TSGFAIIPLREFMLDRKYAKVYYYMEGIFPNYRLMEDTVKQAFLHAN 117 IE + +G ++ + + + KV + + Y+ M A Sbjct: 57 SKFDEKMAIEASYKNGVRLVNIDDLIKGAISVKVLT-LNDVISQYK-MGLAADNAMSFLG 114 Query: 118 KEYGFGKDKTYCFKMIADCYLDIGINVKSYKILGKYIYLSQSFCTDDRW 166 YGFG D YCFK++AD Y +G+ + +Y ILGK I+LSQSF + +W Sbjct: 115 MPYGFGNDNIYCFKLVADSYKFLGVTLPTYNILGKQIFLSQSFVNNKQW 163 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.325 0.143 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,620 Number of Sequences: 156 Number of extensions: 1688 Number of successful extensions: 10 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 1 length of query: 188 length of database: 48,119 effective HSP length: 57 effective length of query: 131 effective length of database: 39,227 effective search space: 5138737 effective search space used: 5138737 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634790|ref|NP_039083.1| ORF FPV120 Virion core protein [Fowlpox virus] (343 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150496|ref|NP_150491.1| LSDV057 putative virion core protei... 195 2e-052 >gi|15150496|ref|NP_150491.1| LSDV057 putative virion core protein [lumpy skin disease virus] Length = 373 Score = 195 bits (495), Expect = 2e-052 Identities = 129/373 (34%), Positives = 201/373 (53%), Gaps = 38/373 (10%) Query: 1 MEDQKQSRIFNMVSKSLIETLLK------DYLDDKAIAGIVARAKXXXXXXXXXXXXXXX 54 M + KQS I++++SKS+I++++K +YL++K+ + Sbjct: 1 MIEPKQSSIYSIISKSIIKSVVKGLSVNNEYLENKS------KHLCYCNNSSYKENIINS 54 Query: 55 XQKC-ESDISIPTIAGVKSLVDKTRNYERHVQDEIEFNELRNILTRLTHNKSFFITCXXX 113 C E DISI +K +++ + + +V + EF L N L R TH+KSFF+TC Sbjct: 55 IYNCIEKDISINDNNHLKDILNNLKAHSVYVYNIGEFWRLYNSLYRFTHSKSFFVTCMPT 114 Query: 114 XXXXXXXXXXXXXXXXXXHAAKIVMEIENYLFDSKKRPSSEVSDLLDMKYAILKFAQYKI 173 +AA++V IE YLF S+K P+ E++DLL+MKY ++ QYKI Sbjct: 115 IVTTLATLITLVLSNKLLYAAEMVESIETYLFSSQKTPAQELADLLEMKYGLINLVQYKI 174 Query: 174 FPILTGQQD--IETIA-------GGKVMSFSEEIDIIIDLPLKSPKLDKMYKTICEIGL- 223 FPI+ G ++ I T++ +S E++ I++LP+K+ + +YK + E G+ Sbjct: 175 FPIIMGIKEPLIGTLSTPIFFAGSTSTTDYSVEVNKIMELPIKTDIIPNLYKFLSEKGIN 234 Query: 224 CKDTYPEYIAGLKIEEVGEE--AENTVKNQLATYIANNN-----KVLDM---AYKYSKGH 273 + + EY+AGLKI E+ + +N N + + NNN K++D+ A K+SKGH Sbjct: 235 TSNNFAEYVAGLKINEIVKNTCVQNDEDNNVKQVLKNNNENYSGKIIDLLKEAEKHSKGH 294 Query: 274 DLDGAVISPITE-----DRIRLTNNDLRKFAILDYLYTIRVLANCIXXXXXXXXXXPGTT 328 LDGAV SPITE ++I L+ D+ KF IL+YLY +RV+AN I G Sbjct: 295 VLDGAVSSPITENAFISNQIPLSVTDMEKFTILEYLYIMRVMANNIKKKNGDNKTSGGII 354 Query: 329 LTINSPYKIVTVP 341 L INSP+K +TVP Sbjct: 355 LNINSPFKTITVP 367 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,761 Number of Sequences: 156 Number of extensions: 1605 Number of successful extensions: 9 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 1 length of query: 343 length of database: 48,119 effective HSP length: 63 effective length of query: 280 effective length of database: 38,291 effective search space: 10721480 effective search space used: 10721480 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634791|ref|NP_039084.1| ORF FPV121 CC chemokine gene family protein [Fowlpox virus] (121 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.138 0.483 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,296 Number of Sequences: 156 Number of extensions: 555 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 121 length of database: 48,119 effective HSP length: 53 effective length of query: 68 effective length of database: 39,851 effective search space: 2709868 effective search space used: 2709868 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634792|ref|NP_039085.1| ORF FPV122 variola B22R gene family protein [Fowlpox virus] (1870 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150573|ref|NP_150568.1| LSDV134 variola virus B22R-like pro... 469 e-134 >gi|15150573|ref|NP_150568.1| LSDV134 variola virus B22R-like protein [lumpy skin disease virus] Length = 2025 Score = 469 bits (1206), Expect = e-134 Identities = 312/1034 (30%), Positives = 502/1034 (48%), Gaps = 62/1034 (5%) Query: 860 DDDSYKSTAISKYSEKMKKLSSSTDKAMVFSLAIQTMSMNMINRQSRLQRI--HEGFRDD 917 D+ + SK + STD M + +S + + SR+ I + Sbjct: 921 DEKNVNKIKKSKKGRTKRLTELSTDNKMNNMIKTIAISSYLSSTNSRISSIMAQANHQPK 980 Query: 918 AEAVIESVSTALSSIGTSMSTAGIVISPHLALAGMGLTLITGLIDIGKDIYYSLSGIKKP 977 ++ V++ LS IG +++ AG SP A AG+ + I+GLID IY+ LSG ++P Sbjct: 981 ELTIVNIVTSVLSQIGGTLAMAGSG-SPKAAAAGLVIQGISGLIDAATSIYFLLSGQEQP 1039 Query: 978 SDPLVLKFNMYREIVADTEHTGVRKCLMPGSDLTIFLSYRSDTSFMPQSEKLATHFIDTI 1037 DP + KF+ Y V+ T+ G R C+MP SD+TI L+YR ++ ++EK + D I Sbjct: 1040 KDPAIEKFSNYASYVSKTD-AGARVCMMPDSDITITLAYRH-SNMNVEAEKTRGEYTDII 1097 Query: 1038 DSVLYYLNTSGIIVDFGLTVACPIGHLRSTTLDITAYTTLKFTTDEGVKFYQFVGLAAML 1097 S +YYL S I +T+ CPIG LR DI Y TL +GVKFY G+ +L Sbjct: 1098 PSTVYYLKNSQISYTVKVTLVCPIGQLRLLEADINTYATLTREDKDGVKFYHVFGILELL 1157 Query: 1098 SKFPIVELTCGKDITLTLKPFEVKMTDMQLLKMSTSGEPPDTKTFPSNVCDLFPMKNFYL 1157 S P V TCG + + PFE K++DMQLL++ST GEP + + S+VCD++P+K FY+ Sbjct: 1158 SYHPNVTFTCGNEPGVIFIPFEQKLSDMQLLRISTPGEPREAEAMSSDVCDIYPLKKFYV 1217 Query: 1158 LLKGCPYDASQTSITRTTCSILMKMTIWDDKTQRWILENPFEDSNKHR-QLFTFDKYDFN 1216 L CP+D S+ S+ TCS L++M+ ++ + QRWIL NPF + N+ QLFTF KYDF+ Sbjct: 1218 LAGNCPFDMSRKSVAYVTCSTLLRMSTYEHEKQRWILMNPFSNGNEDNIQLFTFKKYDFS 1277 Query: 1217 --DTIIKPNTIPGHAKYCTNRHIKECFWNDVMILDDITSCNSRVRILYVEVYTFNSNAGF 1274 IK N+I C+ CFW D MIL+D+TSCNSR+R L VE+ T S G+ Sbjct: 1278 AEKDKIKLNSISHSDTICSQSDTSTCFWADAMILEDVTSCNSRIRKLSVEMSTV-SEKGY 1336 Query: 1275 NSFVLSCPSGSTPVAVGNTLGLIELPLSDFFSVKMFGSTEERSVAVFCVHNEDSRYKSDI 1334 N+FVL+CP GSTP + N +I +P++ + F S + C+HN + YKSDI Sbjct: 1337 NNFVLTCPYGSTPFYISNG-SIISIPMNTRRTSVRFASKHNNVALISCIHNSNPAYKSDI 1395 Query: 1335 LMVSFVKPVYPEDAVLVDTYKGKKKLFDDLVKAVRMPWRSRTCVTWRQGRTCIGYYGKVA 1394 + V F + + + +K +K LFD MP RS+TC + C YY Sbjct: 1396 VEVMFKQSNMSDMYLDFKYFKDRKYLFDSFSDI--MPKRSKTCKRASENSNCKNYYYIKH 1453 Query: 1395 VWPPDYILNIDIGTELLITEKYDPSTVDAMNLKKAITRFPYELDIEFSVSELGRAYDDPN 1454 V ++ + + + + Y ++ L+K F + I S L Y + Sbjct: 1454 VPEIEFKVYVAKLPMVRLGTSYS-GVLNYQTLEKVNKYFSTPISISVDASTLSDVYKNQE 1512 Query: 1455 RFWDDAKKQLRTYSSIXXXXXPCTSRANILIYDANVVISVLG----------YMQSQIND 1504 FW A ++ RT+SSI C +++ NV + V G Y+ D Sbjct: 1513 HFWKFAMEKKRTFSSITATIFAC----SVVAGKVNVNMGVKGSHDYYGRSGKYIYMGSKD 1568 Query: 1505 YGDGKKYTFRHMEG----------GECTATLDLTLKSISMKCPMFTIPR---NISKYEGL 1551 + K F+ + GEC LDL + +++ CP TIP+ + L Sbjct: 1569 FASNDKIYFKFIPDKAEYRLKDTYGECEIYLDLKTRRVNVNCPELTIPQHPFDSPDVNSL 1628 Query: 1552 CFVTITSKDHCAIKGDEYKKYG----------YPSNKANEVRHCGVYTWPNEEDPGHYCG 1601 C + TS+DHCAI + ++ Y Y + + R T+P + ++C Sbjct: 1629 CVLVATSRDHCAISEENWRSYDRTHGVGYSHEYVDAEFDSCRKSHGPTYPVDNFCFYWCA 1688 Query: 1602 YISNLNHVPYTHPEYEACKANILIHYRDTWIESEVLDKPPYVFDFKYDKKSTNEYVDKEL 1661 I Y P+Y+ C +++++ Y + E+ ++ PPY+ +F Y+ NEYV +EL Sbjct: 1689 GI-------YWPPDYDPCASSMVLGYSPIFPENRIV-HPPYIKEFGYE-PGKNEYVKREL 1739 Query: 1662 SDKLKTLYDDNIKLIEYRDGSLAKSINRLSEALTKEARSITDVLVDTDLIEISYAADXXX 1721 +KL+ LY+ L+ Y + + N L++++T EAR I ++ +++ ++ + + Sbjct: 1740 YNKLQNLYEKYNMLVLYSMNPVVEMSNGLAKSMTSEAREIFRLIANSNEMQKAKEENDMK 1799 Query: 1722 XXXXXXXXXXXXXXVLTSTLSDEDLEEIFYKNDYXXXXXXXXXXXXSIKVYPEENYSCGL 1781 + TLS + + K + E Y CG Sbjct: 1800 AEKVKMEIEETLNNIYVDTLSYSESTSLL--RSAISTRCCVLDGTSVYKYFDLEYYLCGN 1857 Query: 1782 LEDFVYEHNDQILLLVNDTFMDYELVNVIGMPVLTCIYPIIVPLVS-ATKKEVEDAIILH 1840 D++ N+ + +ND+ ++ ++ V +P +TC + +V + + +K+ E I+ Sbjct: 1858 YSDYLININNVTYVKINDSLIEEDIYLVRNIPQVTCFHITLVSVNNEEQQKKFETEIVTM 1917 Query: 1841 AIEEGIQELLYELD 1854 A E+ + E+ E D Sbjct: 1918 AFEDVLTEIFDEYD 1931 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 195,569 Number of Sequences: 156 Number of extensions: 9737 Number of successful extensions: 47 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 3 length of query: 1870 length of database: 48,119 effective HSP length: 75 effective length of query: 1795 effective length of database: 36,419 effective search space: 65372105 effective search space used: 65372105 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 99 (42.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634793|ref|NP_039086.1| ORF FPV123 variola B22R gene family protein [Fowlpox virus] (1766 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150573|ref|NP_150568.1| LSDV134 variola virus B22R-like pro... 448 e-128 >gi|15150573|ref|NP_150568.1| LSDV134 variola virus B22R-like protein [lumpy skin disease virus] Length = 2025 Score = 448 bits (1153), Expect = e-128 Identities = 293/982 (29%), Positives = 494/982 (49%), Gaps = 74/982 (7%) Query: 806 VAETVSTCLESMGGVMSIAGSFMSTRLAFSGMGLSTIAGLIDAGVDIYHILTGKPRSPDP 865 + V++ L +GG +++AGS S + A +G+ + I+GLIDA IY +L+G+ + DP Sbjct: 984 IVNIVTSVLSQIGGTLAMAGSG-SPKAAAAGLVIQGISGLIDAATSIYFLLSGQEQPKDP 1042 Query: 866 VIKMFNTYEEYISDTERTGVRKCMIPGTETLVYMSYRNDTSFKQPLDKLSLHFIDTIDSV 925 I+ F+ Y Y+S T+ G R CM+P ++ + ++YR+ ++ +K + D I S Sbjct: 1043 AIEKFSNYASYVSKTD-AGARVCMMPDSDITITLAYRH-SNMNVEAEKTRGEYTDIIPST 1100 Query: 926 LMYLNTSNVILDFSLTVACPLGYLRSIDVDITAYTTLKYTNEDGVRFYKFLNLGTMLSSF 985 + YL S + +T+ CP+G LR ++ DI Y TL ++DGV+FY + +LS Sbjct: 1101 VYYLKNSQISYTVKVTLVCPIGQLRLLEADINTYATLTREDKDGVKFYHVFGILELLSYH 1160 Query: 986 PTVRLTCGKDITLTLKPFEVELRNMQLLKMATPGEPEETKTMPSNVCDIFPLKSFNLLVR 1045 P V TCG + + PFE +L +MQLL+++TPGEP E + M S+VCDI+PLK F +L Sbjct: 1161 PNVTFTCGNEPGVIFIPFEQKLSDMQLLRISTPGEPREAEAMSSDVCDIYPLKKFYVLAG 1220 Query: 1046 GCPFDSSITYIIHTTCSILLRISSWDPAGKRWILENPFGKDPELK-QLFVFQNRNFS--D 1102 CPFD S + + TCS LLR+S+++ +RWIL NPF E QLF F+ +FS Sbjct: 1221 NCPFDMSRKSVAYVTCSTLLRMSTYEHEKQRWILMNPFSNGNEDNIQLFTFKKYDFSAEK 1280 Query: 1103 IVIKPNTVQGHSKFCANKHTTECYWKDTMLLDDTSSCESRSRNIYVEIYTFGYGRGFTSF 1162 IK N++ C+ T+ C+W D M+L+D +SC SR R + VE+ T +G+ +F Sbjct: 1281 DKIKLNSISHSDTICSQSDTSTCFWADAMILEDVTSCNSRIRKLSVEMSTVS-EKGYNNF 1339 Query: 1163 VLSCPSGSTPVAVGNKDGVIELPIGDFATSKMFASTEENKIGVFCIDNYDSDFKSDLIHI 1222 VL+CP GSTP + N +I +P+ TS FAS N + CI N + +KSD++ + Sbjct: 1340 VLTCPYGSTPFYISN-GSIISIPMNTRRTSVRFASKHNNVALISCIHNSNPAYKSDIVEV 1398 Query: 1223 NFVSQAYNESVIFIDEFTGRERVFEDMAKLGTMPWRSRKCVTWKHKRSCVSYHGKIDIWT 1282 F ++ + F R+ +F+ + + MP RS+ C +C +Y+ + Sbjct: 1399 MFKQSNMSDMYLDFKYFKDRKYLFDSFSDI--MPKRSKTCKRASENSNCKNYYYIKHVPE 1456 Query: 1283 EDYIIETDIGDEIMITEKYDAGTIDINSVEKSKVWFPCDLKIHYYIKDLGKAYDDSNRFW 1342 ++ + + + Y +G ++ ++EK +F + I L Y + FW Sbjct: 1457 IEFKVYVAKLPMVRLGTSY-SGVLNYQTLEKVNKYFSTPISISVDASTLSDVYKNQEHFW 1515 Query: 1343 SDAKNMYRTYSSIVLILIPCTMRA-----NMLIYNTSDTIS-SLAYHQSMTQDYGNGKK- 1395 A RT+SSI + C++ A NM + + D S Y ++D+ + K Sbjct: 1516 KFAMEKKRTFSSITATIFACSVVAGKVNVNMGVKGSHDYYGRSGKYIYMGSKDFASNDKI 1575 Query: 1396 ----------YILTRVSGSNCFAELELTSRMMKVTCDPFSIPRTIHKYE-----GICSIT 1440 Y L G C L+L +R + V C +IP+ H ++ +C + Sbjct: 1576 YFKFIPDKAEYRLKDTYG-ECEIYLDLKTRRVNVNCPELTIPQ--HPFDSPDVNSLCVLV 1632 Query: 1441 VTSRDHCATLEDDIKT------SGYSKEQANT------ARYCETYIVPAVWEDPDHYCGY 1488 TSRDHCA E++ ++ GYS E + + TY V D++C Y Sbjct: 1633 ATSRDHCAISEENWRSYDRTHGVGYSHEYVDAEFDSCRKSHGPTYPV-------DNFCFY 1685 Query: 1489 FSKFRHIGYRYPKYEACRSYIHVYYKDTWIEKEVLSKPPYAFKFTYDK-NNEYVNPKLSN 1547 + Y P Y+ C S + + Y + E ++ PPY +F Y+ NEYV +L N Sbjct: 1686 WCAGI---YWPPDYDPCASSMVLGYSPIFPENRIV-HPPYIKEFGYEPGKNEYVKRELYN 1741 Query: 1548 SLKRLYEEYRSISEYKQGSLPSAINRLSESLTSNGRSITEIIVNGRILETAYKADSERLT 1607 L+ LYE+Y + Y + N L++S+TS R I +I N ++ A + + + Sbjct: 1742 KLQNLYEKYNMLVLYSMNPVVEMSNGLAKSMTSEAREIFRLIANSNEMQKAKEENDMKAE 1801 Query: 1608 ELEHAISITSQEVIANSLSAEDINDIIGN--KDKCCLINFRDNSITKVDDLSSYYCGELT 1665 +++ I T + ++LS + ++ + +CC+++ S+ K DL Y CG + Sbjct: 1802 KVKMEIEETLNNIYVDTLSYSESTSLLRSAISTRCCVLD--GTSVYKYFDLEYYLCGNYS 1859 Query: 1666 DYMYDDFIEYSNMSNDQIRPMILINGTLQDFELLYLIGEPVVTCIEATVIPLRTKSIRHE 1725 DY+ I +N++ + IN +L + ++ + P VTC T++ + + + + Sbjct: 1860 DYL----ININNVT------YVKINDSLIEEDIYLVRNIPQVTCFHITLVSVNNEEQQKK 1909 Query: 1726 VEEIMLLRAFKEGLEELMYEFD 1747 E ++ AF++ L E+ E+D Sbjct: 1910 FETEIVTMAFEDVLTEIFDEYD 1931 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 198,032 Number of Sequences: 156 Number of extensions: 10439 Number of successful extensions: 47 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 3 length of query: 1766 length of database: 48,119 effective HSP length: 75 effective length of query: 1691 effective length of database: 36,419 effective search space: 61584529 effective search space used: 61584529 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 99 (42.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634794|ref|NP_039087.1| ORF FPV124 N1R/p28 gene family protein [Fowlpox virus] (289 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host r... 60 9e-012 >gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host range protein [lumpy skin disease virus] Length = 240 Score = 59.7 bits (143), Expect = 9e-012 Identities = 43/182 (23%), Positives = 83/182 (44%), Gaps = 22/182 (12%) Query: 15 FCYIKYDKFDLIMMKENRFINATKLCKLGGKDFHRWKRLDGSKELMIKVNEMNEMWKSAP 74 F + Y+K +I++ N ++N TKLCK GK FH W L S +++ + + ++ Sbjct: 9 FILLNYEKVKVIIVLANNYVNITKLCKPMGKSFHNWWNLKSSYQIICNIAKEEDI----- 63 Query: 75 PPPDLGGIIIEVNGSNQYTEYDIAGSYVHQDLIPHIASWISPLFALKVSKIISCYVSGKY 134 ++ + V Q T+ ++ G Y+H L+ +I +WIS + K+ II+ + S Sbjct: 64 ---EVENLSFNV-WKGQETK-EVYGKYIHPKLLVYILNWISEEYCAKILSIINEFNS--- 115 Query: 135 XXXXXXXXXXXXXXXXXXHKFNNKYDKDTLELKELYREQRKEAKSLRK--IN-ERIEEKY 191 +K + K+ ++ ++ ++K+ +K IN I KY Sbjct: 116 ------KILNNITTNTKINKIYTRLPKEESMFNAIFNKENSKSKNYKKFLINIPTILSKY 169 Query: 192 DK 193 +K Sbjct: 170 EK 171 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,804 Number of Sequences: 156 Number of extensions: 1488 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 289 length of database: 48,119 effective HSP length: 61 effective length of query: 228 effective length of database: 38,603 effective search space: 8801484 effective search space used: 8801484 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634795|ref|NP_039088.1| ORF FPV125 V-type Ig domain [Fowlpox virus] (345 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.136 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,069 Number of Sequences: 156 Number of extensions: 2052 Number of successful extensions: 9 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 345 length of database: 48,119 effective HSP length: 63 effective length of query: 282 effective length of database: 38,291 effective search space: 10798062 effective search space used: 10798062 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634796|ref|NP_039089.1| ORF FPV126 Late transcription factor VLTF-1 [Fowlpox virus] (260 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150497|ref|NP_150492.1| LSDV058 putative late transcription... 375 e-107 >gi|15150497|ref|NP_150492.1| LSDV058 putative late transcription factor [lumpy skin disease virus] Length = 260 Score = 375 bits (963), Expect = e-107 Identities = 176/260 (67%), Positives = 218/260 (83%) Query: 1 MSLRIKIDKLRQLVTYFSEFSEEVSINIDVKSNVLYIFATLGGSINIWTIVPLNSNVFYN 60 MSLRIKIDKLRQ+V YFSEFSEEVSIN+D SN++YIFA LGGS+NIW I+PL+++VFY+ Sbjct: 1 MSLRIKIDKLRQIVAYFSEFSEEVSINVDSNSNLMYIFAALGGSVNIWAIIPLSASVFYD 60 Query: 61 GVENTVFNLPVLKVKNCLCSFHNDAVVSITADHDNNTVTLSSHYTVSIDCNNEQIPHSTG 120 G N VFN+PV KVK+CLCSFHNDA++ I D +NN + LSS++ VS+DCN E +P T Sbjct: 61 GKNNQVFNIPVSKVKSCLCSFHNDAIIEIEPDIENNLIKLSSYHVVSVDCNKELMPIRTD 120 Query: 121 TSISLGIDQKKSYIFNFHKYEEKCCGRTVFHLDMLLGFIKCISQYQYLNICFDDKKLLLK 180 T+ISL IDQKKSYIFNFHKYEEKCCGRTV HL++LLGFIKCI+QYQ+L+I F + ++L+ Sbjct: 121 TTISLKIDQKKSYIFNFHKYEEKCCGRTVIHLELLLGFIKCINQYQHLSILFKNDNIILR 180 Query: 181 TPGTRDTFVRSYSMTEWSPTLQNYSFKIAIFSLNKLRGFKKRVLVFESKIVMDTEGNILG 240 TPG DTF R YSMTE S LQ +SFK+AI SLNKLRGFKKRV VFE++IVMD + N+LG Sbjct: 181 TPGNLDTFSREYSMTECSQELQKFSFKMAISSLNKLRGFKKRVNVFETRIVMDKDDNVLG 240 Query: 241 LLFRDRIGTYKVNVFMAFQD 260 +LF DRI ++++N+FMAF D Sbjct: 241 MLFSDRIPSFRINIFMAFHD 260 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,743 Number of Sequences: 156 Number of extensions: 1934 Number of successful extensions: 14 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 1 length of query: 260 length of database: 48,119 effective HSP length: 60 effective length of query: 200 effective length of database: 38,759 effective search space: 7751800 effective search space used: 7751800 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634797|ref|NP_039090.1| ORF FPV127 Myristylated protein [Fowlpox virus] (336 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150498|ref|NP_150493.1| LSDV059 putative myristylated prote... 199 9e-054 gi|15150547|ref|NP_150542.1| LSDV108 putative myristylated membr... 50 7e-009 >gi|15150498|ref|NP_150493.1| LSDV059 putative myristylated protein [lumpy skin disease virus] Length = 336 Score = 199 bits (506), Expect = 9e-054 Identities = 118/303 (38%), Positives = 168/303 (54%), Gaps = 15/303 (4%) Query: 1 MGGGLVLPTR----DPPKEQDTSETATNIPKLLKSIPGV-KLGQQIRIGY---KPGPETA 52 MG +P + + PK++ T E N+ + + I + ++ ++ IG + + Sbjct: 1 MGSSFTVPEKIKISNRPKKE-TMEMRLNVDNMYEQIKTLNQINDELYIGIINEEKKKQLI 59 Query: 53 KAFPEFDIKEVSNG-LYELSRKSYLGDTKTCCINPSLSYYWEDSKNKIFDEYATGRSLKT 111 K FPEF E G L+++ R Y D K CC + +L YW+D+ I D Y L + Sbjct: 60 KQFPEFLFIESGPGNLHKVIRSKYNNDKKYCCKSMNLFSYWQDNNGNITDFYKPNSILSS 119 Query: 112 CDPLTKTISGSTLCDNILTSLCLDEKSGVDRTMCNEWMGYALNRPDLSIPKSINDRYTKL 171 CDP I S CD+ L S C D + + +C +W+ ALNR + S K IN T Sbjct: 120 CDP---DIQNSGFCDDTLLSWC-DTATQSNSKLCYDWINSALNRNNSSSEKLINGLITT- 174 Query: 172 CSKGANNIVCEDWLHHLRIIGGKENDEVIDNVLMQQTPEFKEKYMKCSFPSHNTVFLADR 231 CS AN +C +LH LR+ + D VID +L Q+ +FK YMKCS+PS+ + + + Sbjct: 175 CSNNANTPICNIFLHCLRVKNTETFDNVIDYILYSQSDDFKRTYMKCSYPSNKIIKESLK 234 Query: 232 VIEPRECWDQECITSNVHFLLSKNYHNLTLCHIYRCNISINNLLIDGKSSVKISCHDENI 291 E RECWD C SN++FLL+KNY NL LC I RCNISINNL D SSV++SC+DE+I Sbjct: 235 FFEARECWDPNCSESNLNFLLTKNYKNLGLCKIDRCNISINNLFFDEGSSVRMSCNDESI 294 Query: 292 SNK 294 +K Sbjct: 295 KSK 297 >gi|15150547|ref|NP_150542.1| LSDV108 putative myristylated membrane protein [lumpy skin disease virus] Length = 377 Score = 50.4 bits (119), Expect = 7e-009 Identities = 60/232 (25%), Positives = 88/232 (37%), Gaps = 44/232 (18%) Query: 78 DTKTCCINPSLSYYWEDSKNKIFDEYATGRSLKTCDPLTKTISGSTLCDNILTSLCLDEK 137 D CC NPS+ + K+ +EY T CDN ++ C K Sbjct: 142 DIIKCCTNPSIG----NCPKKLNNEYQTSH-----------------CDNSMSFFC---K 177 Query: 138 SGVDRTMCNEWMGYALNRPDLSIPKSINDRYTKLCSKGANNIVCEDWLHHLRIIGGKEND 197 S D C +W+ R I S YT +CS + C +++ +R D Sbjct: 178 SNPDNVQCLKWL-----RTKRKIALST---YTDICSNNMDKRYCSEFIRVVRPNFFTFGD 229 Query: 198 EVIDNVLMQQTPEFKEKYMKCSFPSHNTVFLADRVIEPRECWDQECI--TSNVHFLLSKN 255 + L + C P +N F DR + PR C EC T + +LL Sbjct: 230 IAL---LSYCNKNKGNRNCWCVSPPNNITF--DRYLGPRVCLLHECTDKTRDRKWLLYDQ 284 Query: 256 YHNLTLCHIYRCNISINNLLIDGKSSVKISCHDEN---ISNKDK--PKARNK 302 + C CNI+IN+L ++ IS +N I + D PKA+ K Sbjct: 285 DIQRSRCKYIGCNININSLTLENSKIDLISDCSKNKNIIGDLDPGIPKAKKK 336 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,747 Number of Sequences: 156 Number of extensions: 2105 Number of successful extensions: 15 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 2 length of query: 336 length of database: 48,119 effective HSP length: 62 effective length of query: 274 effective length of database: 38,447 effective search space: 10534478 effective search space used: 10534478 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634798|ref|NP_039091.1| ORF FPV128 Myristylated membrane protein [Fowlpox virus] (243 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150499|ref|NP_150494.1| LSDV060 putative myristylated IMV e... 252 8e-070 gi|15150463|ref|NP_150458.1| LSDV024 hypothetical protein [lumpy... 59 1e-011 >gi|15150499|ref|NP_150494.1| LSDV060 putative myristylated IMV envelope protein [lumpy skin disease virus] Length = 245 Score = 252 bits (643), Expect = 8e-070 Identities = 121/243 (49%), Positives = 165/243 (67%) Query: 1 MGAAASIQTTVTTINKKISEKLEQTASASATANCDXXXXXXXXXXXXXXXVLVKNMCSAN 60 MGAAASIQTTV T+N+KIS KLEQTA A+A A CD V VKN+CS+ Sbjct: 1 MGAAASIQTTVNTLNEKISSKLEQTAEATAEAKCDIEIGSIVFRQNKGCNVTVKNLCSSK 60 Query: 61 ASAQLDAIVSAVREVYDQLTEQQKAYAPSLLTAALNIQTNVSTITQDFETYIKQKCNSDA 120 A +QLDAI+ A E YD LT QKAY P L+TAALNIQT+V+T+ +DFETY+KQKC S + Sbjct: 61 AESQLDAILKAATETYDSLTPDQKAYVPGLMTAALNIQTSVNTVVKDFETYVKQKCTSKS 120 Query: 121 VINNIINVQSLEVDECSAPPGQIMTFEFINTGTATGNCAMKSVLDVLTKSSDRVSGNQST 180 VI+N + + ++ +DEC+AP G FEFIN+GT+ G CA+K+++DV TK+S + S +QS+ Sbjct: 121 VIDNKLKIHNIFIDECAAPTGTTTNFEFINSGTSQGICAIKTLMDVTTKASTKFSPSQSS 180 Query: 181 GNDFSKXXXXXXXXXXXXXXXXXAKKLFFMSTNDKVKVLLAKKPDVHWTTYIDTYFRSSP 240 G + KK+ F ST DK+K++LA KP+VHWT+Y+DT+F ++P Sbjct: 181 GYGYQFYIIAAVVVILSMVFLYYVKKMLFTSTKDKIKIILANKPEVHWTSYLDTFFSNTP 240 Query: 241 VLV 243 ++ Sbjct: 241 TII 243 >gi|15150463|ref|NP_150458.1| LSDV024 hypothetical protein [lumpy skin disease virus] Length = 216 Score = 58.9 bits (141), Expect = 1e-011 Identities = 27/110 (24%), Positives = 58/110 (52%), Gaps = 6/110 (5%) Query: 55 NMCSANASAQLDAIVSAVREVYDQLTEQQKAYAPSLLTAALNIQTNVSTITQDFETYIKQ 114 N+C + ++ +E + L++ +K A + ++ +++ I + Sbjct: 53 NLCIDDKELSFYLLIKTFKEFANTLSQNEK------YELANEVGIDLDNQDKNYIPEIIR 106 Query: 115 KCNSDAVINNIINVQSLEVDECSAPPGQIMTFEFINTGTATGNCAMKSVL 164 KC S A + N+I++Q+L++ EC AP G+ + + IN+GT+ NC M +++ Sbjct: 107 KCTSSAAVTNVIDIQTLDIGECIAPNGKNILLQIINSGTSEANCVMNTIM 156 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.313 0.124 0.336 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,656 Number of Sequences: 156 Number of extensions: 772 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 2 length of query: 243 length of database: 48,119 effective HSP length: 60 effective length of query: 183 effective length of database: 38,759 effective search space: 7092897 effective search space used: 7092897 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634799|ref|NP_039092.1| ORF FPV129 [Fowlpox virus] (96 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.336 0.147 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,301 Number of Sequences: 156 Number of extensions: 483 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 96 length of database: 48,119 effective HSP length: 50 effective length of query: 46 effective length of database: 40,319 effective search space: 1854674 effective search space used: 1854674 T: 11 A: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634800|ref|NP_039093.1| ORF FPV130 [Fowlpox virus] (301 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150501|ref|NP_150496.1| LSDV062 hypothetical protein [lumpy... 233 4e-064 >gi|15150501|ref|NP_150496.1| LSDV062 hypothetical protein [lumpy skin disease virus] Length = 318 Score = 233 bits (595), Expect = 4e-064 Identities = 113/270 (41%), Positives = 177/270 (64%), Gaps = 1/270 (0%) Query: 27 ERKRYEISCYIGEYFNIRKQVCIDEANYWVTLSALVKAGKALGFPLVYSVKDHTYGRTIY 86 E++ ++ C + + I KQ C +E W+ LS+LV++ K++GFPL+ K + G+ +Y Sbjct: 43 EKESLDLECNLVKINCILKQACKEETECWIELSSLVRSKKSIGFPLLRGYKSFSSGKILY 102 Query: 87 FEYFKNMKRTNLNINTVCLTKDIILQIVAILYSLYKNNIFSDDFKFDLVSIPRSTISMSI 146 FE FKN K L + + L + I+ QI ILYS++K I+ D+F+FD+V IP++T +S+ Sbjct: 103 FEQFKNTKVEKLVVTSSLLHESILFQIAVILYSMHKREIYVDNFEFDIVDIPKTTFFISV 162 Query: 147 NHLVLLFNTESLILLSTNTHLYKSELSQSCYLDYMTAHQDLMTRRNLKSTNYFFEWFIRN 206 N +V T+ L++LS T Y+ L QSCYL+++ + M R++ +++NYFFEW I+N Sbjct: 163 NQIVFEICTDKLVILSLCTRPYRVNLPQSCYLNFLHCLETTM-RKSYETSNYFFEWLIKN 221 Query: 207 HFENISRQYLDIFKIKKNYINTPQIHRLTEPGSLVYVMYNDALIMGITLSDVSLNNIVRV 266 H +S+ D+FKI+K + T I+R EPG++V V +D I GITL+D+S+++ VRV Sbjct: 222 HISLLSKDGTDLFKIRKRTVTTNHINRFVEPGTIVLVYRDDMYISGITLTDISISDNVRV 281 Query: 267 IYSIDGGNIFEIDDFSTNDVFTAKELITRS 296 ++S+DGG I EIDDF+ DVF A E RS Sbjct: 282 LFSLDGGYILEIDDFNIQDVFLANEYFIRS 311 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,318 Number of Sequences: 156 Number of extensions: 2361 Number of successful extensions: 18 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 1 length of query: 301 length of database: 48,119 effective HSP length: 61 effective length of query: 240 effective length of database: 38,603 effective search space: 9264720 effective search space used: 9264720 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634801|ref|NP_039094.1| ORF FPV131 DNA-binding virion core protien VP8 [Fowlpox virus] (253 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150502|ref|NP_150497.1| LSDV063 putative DNA-binding virion... 182 1e-048 >gi|15150502|ref|NP_150497.1| LSDV063 putative DNA-binding virion core protein [lumpy skin disease virus] Length = 253 Score = 182 bits (461), Expect = 1e-048 Identities = 97/253 (38%), Positives = 155/253 (60%), Gaps = 7/253 (2%) Query: 4 LLLENLFGEKAL--CAQVTRDQLLEIIAAGARSKFPKSLLSMYRVTPRVMTRYPLKLITN 61 L+LENL E+ + +T +E+I AGA+ K+P+S LS++ + PR MT+Y + L+ Sbjct: 3 LILENLIDEETIFYAGSITDYTEMELIIAGAKIKYPRSFLSIFNIIPRNMTKYEMDLVQT 62 Query: 62 ESITGVVITTVYNLKKNLNIPQNNKLTTQDIERYYLDKSVEVINLMVGNTSLGDLACGRP 121 E+ITG V TT +N+KKNL I + KLT + IE YYLD + +V+ LM+ NTSL ++ Sbjct: 63 ENITGAVFTTAFNIKKNLGIV-DEKLTIESIENYYLDPNNDVLTLMINNTSLDNVTT--- 118 Query: 122 RRTKSSKKKDPVIFLGISAPLILVMNSKKSINTYIQD-KKSDPSSDYVNINPGIGVLENY 180 R+ +S + K+PV+F S PL + S+K + Y ++ K+ + Y+ I+ I V Y Sbjct: 119 RKKRSKRNKNPVLFRQGSIPLFFIFESRKKVEIYKENVDKASSDNSYMKIDDNIAVASKY 178 Query: 181 GNTYLLDIHNPSSVLTISTIYGLDNNMELKKLSTASEIDAYQDVNIGKSVDLKKFNEIFN 240 N LLD+H+PS+ + ++ +YG EL+KLS+ EID Y + + + V L F +F+ Sbjct: 179 ANMSLLDVHSPSASMKLNGVYGFTYKNELRKLSSDKEIDEYSNKPLQEPVRLNDFIGLFD 238 Query: 241 TMKKHLSLSNFSI 253 +KK++ L+N I Sbjct: 239 CVKKNIPLTNIPI 251 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.316 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,652 Number of Sequences: 156 Number of extensions: 1762 Number of successful extensions: 13 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 1 length of query: 253 length of database: 48,119 effective HSP length: 60 effective length of query: 193 effective length of database: 38,759 effective search space: 7480487 effective search space used: 7480487 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634802|ref|NP_039095.1| ORF FPV132 Putative membrane protein [Fowlpox virus] (129 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150503|ref|NP_150498.1| LSDV064 putative membrane protein [... 77 2e-017 >gi|15150503|ref|NP_150498.1| LSDV064 putative membrane protein [lumpy skin disease virus] Length = 131 Score = 77.0 bits (188), Expect = 2e-017 Identities = 46/116 (39%), Positives = 68/116 (57%), Gaps = 4/116 (3%) Query: 3 RNINFSPVFIEPRFKHEFLLSPQRYFYILVFEVIVALIILNFFFKEEILYTFFPLAKPSK 62 +NI F+PVFIEP KH LL +Y YI++FE+I +++L FFK EI F + Sbjct: 7 KNIYFTPVFIEPTIKHS-LLQSYKYTYIIIFEIITVMVLLFLFFKSEINMLFNFKQRKVI 65 Query: 63 NSINSLLDRTMLKCEEDGSLMISRPSGIYS--ALSLDGSPVRISDCSLLLSSINGA 116 + I+ +T L C+E+ + P+ +YS ALSL+ P+ C+ LL SING+ Sbjct: 66 SPIDK-FSKTTLYCKENKLFISGLPNTMYSKEALSLNRQPITYKYCNDLLQSINGS 120 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.325 0.141 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,451 Number of Sequences: 156 Number of extensions: 667 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 1 length of query: 129 length of database: 48,119 effective HSP length: 53 effective length of query: 76 effective length of database: 39,851 effective search space: 3028676 effective search space used: 3028676 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634803|ref|NP_039096.1| ORF FPV133 [Fowlpox virus] (148 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150504|ref|NP_150499.1| LSDV065 hypothetical protein [lumpy... 111 1e-027 >gi|15150504|ref|NP_150499.1| LSDV065 hypothetical protein [lumpy skin disease virus] Length = 147 Score = 111 bits (277), Expect = 1e-027 Identities = 56/140 (40%), Positives = 91/140 (65%) Query: 6 QHLLTLFLTDDNGFYSYLSEKSDDEALEDINTIKKYMDFILSVLIRSKEKLENIGCSYEP 65 ++LLT+FL +D+ F+ YLSE+ D+ A+ DI TI Y++F+LS+LIRSK+KLE+IG YEP Sbjct: 5 KYLLTIFLENDDSFFKYLSEQDDETAMSDIETIVTYLNFLLSLLIRSKDKLESIGYYYEP 64 Query: 66 MSESFKALIKVKDDGTLVKAFTKPLLNPHSEKIVLDRGYTSDFAISVIRLSSKSSYILPA 125 +SE K L+ + F K +N +++I +++GY SDF +++RL + P Sbjct: 65 LSEECKTLVDFSNMKNFRILFNKIPINILNKQITVNKGYLSDFVTTLMRLKKELFLESPE 124 Query: 126 NTKYINPNENMYINNLISLL 145 YI+P ++ N++S+L Sbjct: 125 PITYIDPRKDPTFLNILSIL 144 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.316 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,595 Number of Sequences: 156 Number of extensions: 986 Number of successful extensions: 4 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 1 length of query: 148 length of database: 48,119 effective HSP length: 55 effective length of query: 93 effective length of database: 39,539 effective search space: 3677127 effective search space used: 3677127 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634804|ref|NP_039097.1| ORF FPV134 Poly(A) polymerase small subunit PAP-S [Fowlpox virus] (308 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150507|ref|NP_150502.1| LSDV068 poly(A) polymerase small su... 280 4e-078 >gi|15150507|ref|NP_150502.1| LSDV068 poly(A) polymerase small subunit [lumpy skin disease virus] Length = 333 Score = 280 bits (716), Expect = 4e-078 Identities = 148/297 (49%), Positives = 206/297 (68%), Gaps = 6/297 (2%) Query: 12 LEMTKPYMFFNELVGEEDYN-KELENSNTKFXXXXXXXXXXXXXYFLNTLIKNKTLCSDT 70 + M KP+M+F+E+ E +Y+ K E K +FL+ L ++ L T Sbjct: 4 VSMDKPFMYFDEIDNELEYDPKTSEEKPKKLPYQGQLKLLLCELFFLSKLQRHGILDGCT 63 Query: 71 VIVYIGSAPGSHINFLYHYMDDLKIDLKWILIDGRDHDRSLESLKNVSIIHRFVDEQYLF 130 IVY+GSAPG+HI +L + + + ++WILIDGR HD L L++V++I +FVDE Y+ Sbjct: 64 -IVYVGSAPGTHIKYLRDHFLSMGLVIRWILIDGRQHDTILNGLRDVTLITKFVDESYIR 122 Query: 131 KLRNMIRKNHKIVLISDIRSLRG-KEPTSEDLLHDYALQNQMVSILKPIASSLKWRCPFP 189 L+ + ++ KIVLISD+RS RG EP++ DLL +YALQN MVSILKP ASSLKWRCPFP Sbjct: 123 VLKKQLYQS-KIVLISDVRSKRGGNEPSTFDLLSNYALQNIMVSILKPAASSLKWRCPFP 181 Query: 190 DQWIRDFYIPCGDEFLQPFAPPFSAEMRLLSCYSRAPIRLIRIDKNAAIEYEKKMFYLNT 249 DQW++DFYIP G+E LQPFAP +SAEMRL+S YS PI+L I K+ +I+YEKKMFY N Sbjct: 182 DQWVKDFYIPHGNEMLQPFAPKYSAEMRLISIYSGNPIKLRCITKDDSIKYEKKMFYFNK 241 Query: 250 KIRPKIVLDFDYPNQKYDYFYMFYILKDIVLPTYKEFSTYKQKVIFLQEAIFNALNI 306 IR +I+++FDY NQ+YD+++M+ +LK + + K+FS+ K KV+F +IF L I Sbjct: 242 IIRNRIIINFDYSNQEYDFYHMYNMLKTVY--SNKDFSSIKSKVLFFHHSIFKFLKI 296 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,213 Number of Sequences: 156 Number of extensions: 1961 Number of successful extensions: 19 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 1 length of query: 308 length of database: 48,119 effective HSP length: 62 effective length of query: 246 effective length of database: 38,447 effective search space: 9457962 effective search space used: 9457962 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634805|ref|NP_039098.1| ORF FPV135 RNA polymerase subunit RP022 [Fowlpox virus] (186 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150508|ref|NP_150503.1| LSDV069 RNA polymerase subunit [lum... 215 6e-059 >gi|15150508|ref|NP_150503.1| LSDV069 RNA polymerase subunit [lumpy skin disease virus] Length = 185 Score = 215 bits (548), Expect = 6e-059 Identities = 101/181 (55%), Positives = 139/181 (75%), Gaps = 1/181 (0%) Query: 2 MNQYNVTYLSKILCLKTEILYKPFSIINRSIVNQYNIDVKYDDITSIVKIRHKTENTILV 61 MN +NV YL+KILCLKTEIL P++II++ +V +YN +KY D+ + + ++HK + T + Sbjct: 1 MNPHNVKYLAKILCLKTEILKNPYAIISKDVVLRYNTTIKYGDLVTYITVQHKIDATKTL 60 Query: 62 FQIFNESNVKYSPIEYDYGDPIIITSNLQHGHNRIPINMLYIDVVESDMFPTFSRLDSET 121 FQ+FNES+V YSP+E DYG PIIITS LQ GHN+ PIN LYID+V SD+FP F RL E Sbjct: 61 FQVFNESSVTYSPLENDYGFPIIITSFLQTGHNKFPINFLYIDIVASDLFPKFVRLTDEE 120 Query: 122 IKIITSILQSDNKKEQSIKLPKVSENELSVKILYHKDYPLKYVRYYKNNMVTGIEVIDRS 181 I + S+LQ + KE S+KLPK+ E E++ KIL+HKD PLK +R+++NN++TGIE+ DR+ Sbjct: 121 IVTVQSVLQIGDSKE-SLKLPKMLETEIAAKILFHKDIPLKIIRFFRNNIITGIEISDRA 179 Query: 182 V 182 V Sbjct: 180 V 180 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.137 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,841 Number of Sequences: 156 Number of extensions: 1554 Number of successful extensions: 10 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 1 length of query: 186 length of database: 48,119 effective HSP length: 57 effective length of query: 129 effective length of database: 39,227 effective search space: 5060283 effective search space used: 5060283 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634806|ref|NP_039099.1| ORF FPV136 Membrane protein [Fowlpox virus] (137 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150509|ref|NP_150504.1| LSDV070 hypothetical protein [lumpy... 110 2e-027 gi|15150547|ref|NP_150542.1| LSDV108 putative myristylated membr... 43 3e-007 >gi|15150509|ref|NP_150504.1| LSDV070 hypothetical protein [lumpy skin disease virus] Length = 133 Score = 110 bits (275), Expect = 2e-027 Identities = 52/114 (45%), Positives = 71/114 (61%), Gaps = 1/114 (0%) Query: 7 DEAIFKYCESNPKDRDCLCIHPEPTIEKIGEDLLLPYYCWYEPCKRKTAKIPTALRDNMK 66 DE I+ +C+ N D C C++P+ +I KIGE+ LPYYCWYEPCKR A I +L+ N+ Sbjct: 3 DEDIYSFCDKNENDIRCRCLNPDSSIIKIGEETRLPYYCWYEPCKRSDALIVKSLKKNIS 62 Query: 67 RCNLIDCSVSLGEINLLDGILKVNNDCLSSHAIYAGY-SVKPLEQEIHLPIIDP 119 CN+ DC V+LG I + +G + V N C ++ + Y K L QEI PII P Sbjct: 63 LCNISDCRVTLGNIKIKNGYIDVKNVCGTNSSFTNEYIRTKYLNQEIEEPIIHP 116 >gi|15150547|ref|NP_150542.1| LSDV108 putative myristylated membrane protein [lumpy skin disease virus] Length = 377 Score = 43.1 bits (100), Expect = 3e-007 Identities = 25/90 (27%), Positives = 39/90 (42%), Gaps = 5/90 (5%) Query: 7 DEAIFKYCESNPKDRDCLCIHPEPTIEKIGEDLLLPYYCWYEPCKRKTAKIPTALRD--- 63 D A+ YC N +R+C C+ P I + L P C C KT L D Sbjct: 229 DIALLSYCNKNKGNRNCWCVSPPNNI--TFDRYLGPRVCLLHECTDKTRDRKWLLYDQDI 286 Query: 64 NMKRCNLIDCSVSLGEINLLDGILKVNNDC 93 RC I C++++ + L + + + +DC Sbjct: 287 QRSRCKYIGCNININSLTLENSKIDLISDC 316 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.141 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,575 Number of Sequences: 156 Number of extensions: 689 Number of successful extensions: 5 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 3 length of query: 137 length of database: 48,119 effective HSP length: 54 effective length of query: 83 effective length of database: 39,695 effective search space: 3294685 effective search space used: 3294685 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634807|ref|NP_039100.1| ORF FPV137 RNA polymerase subunit, RPO147 [Fowlpox virus] (1287 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150510|ref|NP_150505.1| LSDV071 RNA polymerase subunit [lum... 1833 0.0 >gi|15150510|ref|NP_150505.1| LSDV071 RNA polymerase subunit [lumpy skin disease virus] Length = 1285 Score = 1833 bits (4748), Expect = 0.0 Identities = 880/1288 (68%), Positives = 1085/1288 (83%), Gaps = 4/1288 (0%) Query: 1 MSVISKVSYSLYSQNEINATDININYVKDDDEVGTVKDSRLGATDGVLCRTCNRTELECF 60 M+VISKV+YSLY+Q EINATDI IN+VK+DD+VGTVKD RLGA DG LC+TC +TEL+CF Sbjct: 1 MAVISKVTYSLYNQEEINATDIFINHVKNDDDVGTVKDGRLGAMDGALCKTCGKTELQCF 60 Query: 61 GHWGKVRIYENIIIKPEYISEVIRILGHICLTCGLLRSREPYTVNISSLTSGELXXXXXX 120 GHWGKVR+YE IIKPEYI EVIRIL HIC+ CG LRSREPY +++ ++S L Sbjct: 61 GHWGKVRLYETHIIKPEYIGEVIRILNHICIRCGFLRSREPYIEDVTKMSSYALRKLKDK 120 Query: 121 XXXXXXXCWNSRCMQPYQKVNFSKKKVCLVNKTDEFCVPNALVYEKITSIHHKFWPVLDI 180 CWNS+CMQ YQK+ FSKKKVC VNK+D+ +PNAL+Y+KITSI+ +FWP+L+I Sbjct: 121 ILSKKKSCWNSKCMQQYQKITFSKKKVCFVNKSDDITIPNALIYQKITSIYKRFWPLLEI 180 Query: 181 HQDPATLFYRGYFSIPPLLIRPVISFWIDNVPKDTNELTYLLGVIVKHCNANADEPTIQK 240 HQ P LFY+ +F +PPL+IRP ISFWID++PK+TNELTYLLG+IVK+CN NADE IQK Sbjct: 181 HQKPENLFYKNFFPVPPLIIRPAISFWIDSIPKETNELTYLLGMIVKYCNMNADEQVIQK 240 Query: 241 AIIEYDNIKLISTNSTTNNLSYITSGKTNMLRSFVVARRKDQTARSVLGPDSSLDITEVG 300 AIIEYD+IK+IS N+T+ NLSYITSGK NM+RS++VARRKDQTARSV+GPD +L I EVG Sbjct: 241 AIIEYDDIKIISNNTTSINLSYITSGKNNMIRSYIVARRKDQTARSVIGPDITLTINEVG 300 Query: 301 IPDYVRNTLTEKIFINAFTIDKVKDMFQRGEIKYYFNKQLHQLTXXXXXXXXXXXXHLLP 360 +P Y+RNTLTEKIF+N FT+D+V+ +F EIK+YFNK+L+QLT H+LP Sbjct: 301 VPFYIRNTLTEKIFVNPFTMDEVQRLFTNNEIKFYFNKRLNQLTRIKQGKFIKNKIHMLP 360 Query: 361 GDWVETNIQEFTNIIFGRQPSLHRYNVISSSVRKTEEDTIKIPPGIANSQNADFDGDEEW 420 GDWVE ++E T+IIFGRQPSLHRYNVI+S+V+ E DTIKIPPGIANSQNADFDGDEEW Sbjct: 361 GDWVEVPLKENTSIIFGRQPSLHRYNVIASTVKYIEGDTIKIPPGIANSQNADFDGDEEW 420 Query: 421 TIVEQNPKSVIEQSILMYPTTLLKHDVHGMPVYGSIQDEILAAYNLFREYDLTQDEVLNI 480 I+EQNPK+VIEQSILMYPTTLLKHDV+G PVYGSIQDEI+AAY+LFR +LT DEV+N+ Sbjct: 421 MILEQNPKAVIEQSILMYPTTLLKHDVNGSPVYGSIQDEIVAAYSLFRMENLTLDEVMNL 480 Query: 481 LGKYGLEFLTDYERKDKYTGKDIFKFLINEPEINYPGIICNGEIIAENIDSNFIVSMKHM 540 LGKYG+ F ++ K ++GKDI +FLIN+ ++NYPGI+ NG I+A +I S+FIV+M+ M Sbjct: 481 LGKYGINFSSN--GKTVFSGKDILEFLIND-KVNYPGILSNGRIVANDIISDFIVAMRGM 537 Query: 541 SISGLITDYKSSVEGIKFINKASYVFKRYLKIYGFSITFRNLCPDFEFTKKLREQNIKKI 600 S++G I+DYKS+VEGI+FI K+SYVFKRYL IYGF +TF+ L P+ +FT KL N +KI Sbjct: 538 SLAGFISDYKSNVEGIEFIIKSSYVFKRYLSIYGFGVTFKELRPNSDFTNKLEAINSEKI 597 Query: 601 NDIKHSYVKYLYDVANGDIIPLSRSDEMDAVDSILSGLTNFNIQEIEKYMKEVISKDPDN 660 IK+SY KYL DV +G I+PLS+S E DAV+S+LS LTN NI+EIE+YMK + +PDN Sbjct: 598 ELIKNSYKKYLTDVKDGKILPLSKSMESDAVESMLSNLTNLNIKEIEEYMKTTLINNPDN 657 Query: 661 SLMKMSCAGYKVNPTELMYILGTYGQQRIDGEPIDTKIYGRVLPYFLPDSKDPEGKGYIL 720 +L+KM+ AGYKVNPTELMYILGTYGQQRIDGEP +T++ GRVLPY+LPDSKDPEG+GYIL Sbjct: 658 NLLKMAKAGYKVNPTELMYILGTYGQQRIDGEPTETRVMGRVLPYYLPDSKDPEGRGYIL 717 Query: 721 NSLIQGLTGSQYYYAMLIARSQSTDIVCETSRTGTLARKIIKKMEDMVVDSYGQIVYGNT 780 NSL QGLTGSQYY++ML+ARSQSTDIVCETSRTGTLARKIIKKMEDMVVD YGQ++YGN Sbjct: 718 NSLTQGLTGSQYYFSMLVARSQSTDIVCETSRTGTLARKIIKKMEDMVVDGYGQVIYGNI 777 Query: 781 LVKYAANYTKIQGSVCKSVELIYPDESLTWFLEISALWDKLKNGFIYNQGQKIAKYILAP 840 L+KYAANYTKI SVCK ++LI+P ES+ W+ EIS++W+K+K+GFIY+Q QKI+K L+P Sbjct: 778 LIKYAANYTKISASVCKPIDLIFPRESMVWYFEISSIWEKIKDGFIYSQKQKISKKTLSP 837 Query: 841 FNFKVFMK-LDETNPMKSKDLYDKIQLVIKDVRENYFFDVTSIDFIEYVFLTHLNPSRVK 899 FNF VF++ DE + + SKDLYD IQ VI DV E YFF +++IDFI+YVFLTHLNPS ++ Sbjct: 838 FNFLVFLEPSDEKHAISSKDLYDMIQNVIDDVSEKYFFTISNIDFIKYVFLTHLNPSIIR 897 Query: 900 VSEDTANLIFEKLYEKLNYTLGGGTPIGIISAQVLSEKFTQQALSSFHTTEKSGGIKRKL 959 ++++TA IF+K YEKLNY+LGGGTPIGII+AQVLSEKFTQQALSSFHTTEKSG IK KL Sbjct: 898 ITKETATTIFKKFYEKLNYSLGGGTPIGIIAAQVLSEKFTQQALSSFHTTEKSGAIKHKL 957 Query: 960 GFNEFNQLTNLSKNKTEIITLISDDITKLQTIKMNFEFVYLGELFPEITIEEDKNYYRID 1019 GFNEFN LTNLSKNKTEIITLIS+DI KLQ++K+NFEFV LGEL P+I + D Y ID Sbjct: 958 GFNEFNNLTNLSKNKTEIITLISEDIEKLQSVKINFEFVCLGELNPDIVLNNDNEKYIID 1017 Query: 1020 INVNRLYIKRNQLTELIVEYMLEKFVSYSVLVKNWGMETNIINEHIIRFSLFIVFTEPVN 1079 I +NR+YIKR +TEL+VE+M+E+FVS+SVLVK WG+ET I + + I+F++ + F EP Sbjct: 1018 ITINRIYIKRADITELVVEHMIERFVSFSVLVKEWGLETYIEDNNNIKFTILVKFIEPEE 1077 Query: 1080 LNKNKFMMMLPGAANKGKISKYKIPISEYQSYTDYNKTVKLYRLTVELMGLKELGTFDLV 1139 L+ NKFMM+LPGAANKGKISK+KIPIS Y Y D+NK+ K+ ++TVELM LKELGTF+L Sbjct: 1078 LSLNKFMMVLPGAANKGKISKFKIPISNYNYYDDHNKSRKMNKMTVELMNLKELGTFNLE 1137 Query: 1140 NVNVIPGVWNTYEIFGIESAKSYLCEALLSTYGEGLDYLYQPCDLLASLICLNYEPESIN 1199 NV V PG+WNTY+IFGIESA+SYLCEALL+TYGEG DYLYQPCDLLASLIC++YEPES+N Sbjct: 1138 NVIVYPGIWNTYDIFGIESARSYLCEALLNTYGEGFDYLYQPCDLLASLICMSYEPESVN 1197 Query: 1200 KFKFGPVSALKRATFGDNKAIINAALYKKTEPVNDNSSCHFFSKVPKIGTGYYKYFIDLE 1259 KFKFG S+LK+ATFGDNKA++NAAL+KKTEPVNDNSSCHFFSKVPKIGTGYY+YF++LE Sbjct: 1198 KFKFGVTSSLKKATFGDNKALLNAALHKKTEPVNDNSSCHFFSKVPKIGTGYYRYFVNLE 1257 Query: 1260 KFLRIKKTISEKLIDKKLVDIGDNITDF 1287 R++K +S + D+K+ ++ + +F Sbjct: 1258 LLTRLEKKLSVTISDRKVEELIEKSDEF 1285 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.139 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 160,319 Number of Sequences: 156 Number of extensions: 8971 Number of successful extensions: 45 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 1 length of query: 1287 length of database: 48,119 effective HSP length: 73 effective length of query: 1214 effective length of database: 36,731 effective search space: 44591434 effective search space used: 44591434 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 98 (42.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634808|ref|NP_039101.1| ORF FPV138 Protein-tyrosine phosphatase [Fowlpox virus] (166 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150511|ref|NP_150506.1| LSDV072 putative protein-tyrosine p... 169 4e-045 >gi|15150511|ref|NP_150506.1| LSDV072 putative protein-tyrosine phosphatase [lumpy skin disease virus] Length = 171 Score = 169 bits (428), Expect = 4e-045 Identities = 84/168 (50%), Positives = 114/168 (67%), Gaps = 2/168 (1%) Query: 1 MDEKQLYKHIITKSTNTCVKF-TPRDITKITDYVYLGNYRNVIE-LPNKTFFKYIVNVSM 58 MD+K LY++++ KST + K P + ++TDYVYLGNY + I + + FKYI+N++ Sbjct: 1 MDKKSLYENVLLKSTGSLPKAKAPTKMMRVTDYVYLGNYDDAINAISSNVNFKYILNLTT 60 Query: 59 LKYKLKRTDITVLHFPLEDNDTVSISKHIDAVTYVLKKCESLKIPVLVHCMAGINRSSAM 118 KY + I ++H PL D++ +++ H D VT L KC+ PVLVHC+AG+NRS AM Sbjct: 61 EKYCFNDSRINIIHMPLIDDEKTNLNDHFDYVTNFLSKCDEEHYPVLVHCVAGVNRSGAM 120 Query: 119 IMGYLMEIRDKNIPFVIYFLYIYHELKYIRGAFIENKSFLNQIIDKYI 166 IM YLM R K+IP IYFLYIYH ++ RGAFIEN SF Q+IDKYI Sbjct: 121 IMAYLMSKRSKDIPAFIYFLYIYHSMREKRGAFIENPSFRKQLIDKYI 168 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.326 0.142 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,019 Number of Sequences: 156 Number of extensions: 1189 Number of successful extensions: 10 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 1 length of query: 166 length of database: 48,119 effective HSP length: 56 effective length of query: 110 effective length of database: 39,383 effective search space: 4332130 effective search space used: 4332130 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634809|ref|NP_039102.1| ORF FPV139 [Fowlpox virus] (190 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150512|ref|NP_150507.1| LSDV073 hypothetical protein [lumpy... 162 6e-043 >gi|15150512|ref|NP_150507.1| LSDV073 hypothetical protein [lumpy skin disease virus] Length = 190 Score = 162 bits (410), Expect = 6e-043 Identities = 74/188 (39%), Positives = 110/188 (58%), Gaps = 1/188 (0%) Query: 3 NEVELSVHGIELNYARNNITKNIRYARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLSK 62 ++ L+V+G+EL YAR K I+ A+ L K Sbjct: 2 DKTTLNVNGVELEYAREKENKTIQTAKTSTLCFFMLILGISILLLWFQVSDNSIFSELMK 61 Query: 63 YTRIKNNLSSWKPLVIQKSKINSELGKHAALNRQDLMRFKCVDFGSYFLPVRLNNNNFLP 122 Y RIK ++ W+PLV K+ + S+ GK ++ R + F CVDFGSYF+P+RL+ FLP Sbjct: 62 YIRIKKSIRGWRPLVETKTNLESDRGKMLSMGRDEYFSFNCVDFGSYFVPIRLDRKTFLP 121 Query: 123 EAVRRGDGDGWMIKKAGKYDPAAEQYCDFIL-DRYKDTITCGDQMFNSLGYSGYFESGHW 181 +A+RRG GDGWM++KA K D +A+Q+C +++ + ++ ITCG M N +GYSGYF + HW Sbjct: 122 QAIRRGKGDGWMVQKADKIDVSAQQFCQYLIKHKSENIITCGTHMINEIGYSGYFTNSHW 181 Query: 182 CQTFLDLV 189 C F +L+ Sbjct: 182 CSDFHNLL 189 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.138 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,646 Number of Sequences: 156 Number of extensions: 861 Number of successful extensions: 3 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1 length of query: 190 length of database: 48,119 effective HSP length: 57 effective length of query: 133 effective length of database: 39,227 effective search space: 5217191 effective search space used: 5217191 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634810|ref|NP_039103.1| ORF FPV140 Virion envelope protein, p35 [Fowlpox virus] (327 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150513|ref|NP_150508.1| LSDV074 putative IMV envelope prote... 115 1e-028 >gi|15150513|ref|NP_150508.1| LSDV074 putative IMV envelope protein [lumpy skin disease virus] Length = 322 Score = 115 bits (289), Expect = 1e-028 Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 43/337 (12%) Query: 10 IFVITTIGRPSSTVVP---------FKNLEVSEWSYKKGIKNGYDDYRDXXXXXXXXXXX 60 ++VI +GR S VVP +K ++ + + + D +D Sbjct: 6 LYVIPIVGREISDVVPELKSDNDIFYKKVDTVKDFKNSDVNFFFKDKKDISLSYKFLIWE 65 Query: 61 QEPNADDKVGDIE-YDEMVSVRDGYYSDVCRLTCTEDTKIFIADHISLWRYIMD----NA 115 + +K G +E + E Y+S +C CT++ K IA H SLW+ D N+ Sbjct: 66 KV----EKSGGVENFTE-------YFSGLCNALCTKEAKSSIAKHFSLWKSYADADIKNS 114 Query: 116 EKLPNYVVIMEDDNTITGEGFITNLDNITKVLNDNNVDILQL-----VTHTKLLKDRNSQ 170 E ++V++EDDNT+ + + NI + + N+DI QL +++++L ++ + Sbjct: 115 EN--KFIVVIEDDNTLKD---LITIHNIIIEMQEKNIDIFQLRETFHNSNSRILFNQENN 169 Query: 171 HLMLLPDLEAFKGSFDVSLSAYIIRQEAVRKLYSYFTNNKP-SFDISLEILRIENTLGIT 229 + M ++ G +D +LSAY+IR + K+ + NK S +S E+ ++E L + Sbjct: 170 NFMY-----SYTGGYDFTLSAYVIRLSSAIKIINEIIKNKGISTSLSFEMYKLEKELKLN 224 Query: 230 RYVV-DNDRYVYHDYKLANEFMKNKKNRLSIKSRIDGWIMDNWPSFYHRMYYPLFSVFGK 288 R V+ D+ +Y+ H+ K ++ N+ I +R+ W+ +P F + + +PL S FG Sbjct: 225 RQVLNDSSKYILHNTKYLSKKRANEMKN-GIWNRVGKWMAHRFPDFSYYVSHPLVSFFGI 283 Query: 289 YDXXXXXXXXXXXXXXXXXXXXNNKLLWLLSGVFLAY 325 +D N+KLLW L+G+ Y Sbjct: 284 FDISIIGALIILFIIIMIIFDLNSKLLWFLAGMLFTY 320 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.139 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,939 Number of Sequences: 156 Number of extensions: 2148 Number of successful extensions: 9 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 327 length of database: 48,119 effective HSP length: 62 effective length of query: 265 effective length of database: 38,447 effective search space: 10188455 effective search space used: 10188455 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634811|ref|NP_039104.1| ORF FPV141 RNA polymerase associated protein RAP94 [Fowlpox virus] (798 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150514|ref|NP_150509.1| LSDV075 RNA polymerase-associated p... 853 0.0 >gi|15150514|ref|NP_150509.1| LSDV075 RNA polymerase-associated protein [lumpy skin disease virus] Length = 798 Score = 853 bits (2203), Expect = 0.0 Identities = 433/806 (53%), Positives = 571/806 (70%), Gaps = 16/806 (1%) Query: 1 MENKESVLLELVPKIKAYIKDDTVKEKSYQDFIEKNKELFICNLYNVNMITDEDIKLLYI 60 ME KESVL+E++PKIK YI + + KSY DFI NK +FI NLYNV+ IT+EDI+LLY+ Sbjct: 1 METKESVLIEIIPKIKEYILNPNINPKSYSDFISNNKNIFIINLYNVSTITEEDIRLLYM 60 Query: 61 TIEQNIDIDDKSLVAIFSYIGYNFEKNIHDDNSS---IDLGDRMTGDMNYNMYDTFFSTL 117 TIEQN+++DD++L++IFSYIGY FE+N+ ++ +S I+ + T +M +N+Y+ FF L Sbjct: 61 TIEQNLEVDDQTLISIFSYIGYKFEQNVKEEITSSLFINEYNTTTDEMTFNLYNLFFDNL 120 Query: 118 DFIIRQKHVNILVNDEGNNDFNINYRSFTTSLSYKEDKYEQVVNEIPFNMKELLSYVSKN 177 D +RQ+ +N+LVND+ N D INY++ + ++ +D + V EIPFNMK+++SYVSKN Sbjct: 121 DVYLRQRRINVLVNDDLNGDIMINYKTSDLTSNFNKD-IDPEVREIPFNMKDMISYVSKN 179 Query: 178 LDQLRFSKKYLDFAYLCRNIGIKISKRKYNVRYIFNYVIDELTIPIVIKDYLDVKYVYLE 237 +DQ RFSKKYLDFAYLCR+IGI ISK+K N+RYI+ Y +D ++IPIVIKD+LDVKYVYLE Sbjct: 180 IDQFRFSKKYLDFAYLCRHIGIPISKKKLNMRYIYLYKVDGVSIPIVIKDFLDVKYVYLE 239 Query: 238 ETNKAYRNNFDNDNKYFYEWGKVIIPKFKNPRLYSYFFLSNYGLCDLFMELINIKQVTFE 297 ETNK Y+N+F DN +WG +IIPK KN LYSY FLSN+ L DLF +LI K++TF+ Sbjct: 240 ETNKTYKNSFSEDNNSLIDWGNIIIPKIKNKHLYSYIFLSNFYLRDLFPKLIEEKEITFK 299 Query: 298 PRKNPIEYIYVSELKFWEEGGSVDFVPCEHEIAIIDAKKVSLEYYENINKFIAKYIYYED 357 KN I+ I V E K ++FVPCEH++ +I+A KV EY+ +N F +YIYYE+ Sbjct: 300 DLKN-IKKIEVIEPKSLRGEVKIEFVPCEHQVKLIEALKVDTEYFTKVNNFATEYIYYEN 358 Query: 358 GLAYCNLCGINIQELNLDATDVTKISLINVTYNKSIFMSEPYNYFSHSQRFIFNTIMSFD 417 GLA+CN+CG+N+ NLDA DV K ++I T+NKSIF+SEPY+YF HSQRFIFN IMSFD Sbjct: 359 GLAFCNICGMNVPNFNLDAADVVKNNVIVSTFNKSIFLSEPYSYFVHSQRFIFNIIMSFD 418 Query: 418 TIMKSQMWNMKYNINRLILNFLIDINSKRHEYEKQFATEIKKGIFFLRLSANLFDIQMSS 477 IMKSQ W MKYNINR+ILNFLI+INS+R +YEK+F+ EIKKGIFFLRLSANLFDI +SS Sbjct: 419 NIMKSQTWVMKYNINRIILNFLIEINSRRQKYEKKFSNEIKKGIFFLRLSANLFDIHVSS 478 Query: 478 MELFYSAKILNIHFIVALVIVLNSGADFIMYYMTNKKEETNYSDLNHIISVIVFDFLKKT 537 ELFYS+KILN+++IV LVI+LNS ADFI+ YM +KK++ S L + ISVI++DFL KT Sbjct: 479 TELFYSSKILNLNYIVVLVIILNSSADFIVSYMNSKKKKVEESSLKYAISVIIYDFLLKT 538 Query: 538 RTVDSKQFNTIELFTETYMKIATEELIVHYNRIKLEMERLIAIKKDRKTPNYDISIYRQI 597 + + +TI LFT+ Y I EEL +H RI +E+ +L++I++ PNYD+ + Sbjct: 539 KICEKGFLDTIILFTDVYTSIMPEELDLHLQRIIIELRKLVSIERSLVAPNYDVEVKTLD 598 Query: 598 QRTDEIAFFPSCITSTKLFITYEKVVAENTEIITIKHPVRIKEGTDEDKEIFEDIMKKTT 657 + FF S T + + +N + I HP+ I T KE++E K T+ Sbjct: 599 LPLAALKFFES---YTLIVNNMPVIENKNKKRNIIAHPIPILNDT---KEMWEQFKKITS 652 Query: 658 ----KVLIRVNDTNAYNASFFTTHXXXXXXXXXXXXPLTSLFVYNVLKYYSSNVDFYVFK 713 KVLIR NDTNA F TH L SLF+ NVLKYY S YVF+ Sbjct: 653 DDELKVLIRYNDTNATKLVIFPTHLKIEIERKKMIIALKSLFINNVLKYYYSIPSLYVFR 712 Query: 714 FGDPFPFHYDLISQEHTNHKITGYNMLRQELLPNSNVFTYFSDSLNRQELEFSFYMFLAS 773 FGDPFPF +L+ + H K+ YN+ R LLP S+VF YFSDSLNR +LE++FY FL+ Sbjct: 713 FGDPFPFDDELVDKYHVQSKVNCYNLFRYHLLPESDVFVYFSDSLNRDKLEYTFYRFLSR 772 Query: 774 YVN-VTEWIEENSKKIKELYIINFNN 798 YVN V+ WI+EN KI+ELY NFNN Sbjct: 773 YVNDVSIWIDENITKIRELYFFNFNN 798 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.140 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 117,485 Number of Sequences: 156 Number of extensions: 7594 Number of successful extensions: 57 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 1 length of query: 798 length of database: 48,119 effective HSP length: 69 effective length of query: 729 effective length of database: 37,355 effective search space: 27231795 effective search space used: 27231795 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634812|ref|NP_039105.1| ORF FPV142 Late transcription factor VLTF-4 [Fowlpox virus] (174 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.308 0.125 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,072 Number of Sequences: 156 Number of extensions: 465 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 174 length of database: 48,119 effective HSP length: 57 effective length of query: 117 effective length of database: 39,227 effective search space: 4589559 effective search space used: 4589559 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634813|ref|NP_039106.1| ORF FPV143 DNA topoisomerase [Fowlpox virus] (316 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150516|ref|NP_150511.1| LSDV077 DNA topoisomerase [lumpy sk... 314 2e-088 >gi|15150516|ref|NP_150511.1| LSDV077 DNA topoisomerase [lumpy skin disease virus] Length = 317 Score = 314 bits (804), Expect = 2e-088 Identities = 156/292 (53%), Positives = 211/292 (71%), Gaps = 3/292 (1%) Query: 23 LVPASNKTYEIIKAYRVPPHLKEVIVYEQSLEEASNSLIFIGVDSKGRKQYFYGKNHVIL 82 LV N TYEIIK R+PPHL +VIVYEQ+ E++ LIF+G DSKGR+QYFYGK HV Sbjct: 20 LVSFDNPTYEIIKRIRIPPHLTDVIVYEQTYEQSLTRLIFVGSDSKGRRQYFYGKLHVKN 79 Query: 83 RNKNRDXXXXXXXXXXXXXXXXXXXXXCSES--NTLEFQLAVFMLMETSFYIRIGKVKYY 140 RN NR+ +E N + FQ VFMLMETSF+IR+GK+ Y Sbjct: 80 RNSNRNKIFIKVFNVINKINEFIDNNIINEKDKNDVLFQSGVFMLMETSFFIRMGKMCYL 139 Query: 141 KQNDTVGLLTLQNKHLTVTDENITIKFTGKDKVVHAFNVKKENRLYEPLLRIHDFSKPDS 200 K+N+TVGLLTL+NKH+++++ I IKF GKDKV H F V K N+LY+PLL++ D PD+ Sbjct: 140 KENETVGLLTLKNKHISISNGKIVIKFIGKDKVPHTFIVHKSNKLYKPLLKLFDKEFPDN 199 Query: 201 VLFSLLSEKKVYSFIKQYSIKIKDLRTYGVNITFLYNIWNNVISMLKLPSIKKLIVLSIK 260 LFS LSE+K+Y +K++ I++KDLRTYGVN TFLYN W+NV S+ +PS KKLI SIK Sbjct: 200 FLFSKLSEQKIYKLMKKFKIRLKDLRTYGVNYTFLYNFWSNVKSLNPIPSTKKLISTSIK 259 Query: 261 QTADTIGHTPNISKQAYMAITILE-LMKEENITETIKQKTFDEFLNFVINYV 311 QTA+ +GH+P+ISK AY+A T+++ L+++ NI ETIK+K+F+EF+ +++Y+ Sbjct: 260 QTAEIVGHSPSISKSAYIATTVIDFLIQDSNILETIKEKSFEEFIELIVDYI 311 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,738 Number of Sequences: 156 Number of extensions: 1938 Number of successful extensions: 17 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 1 length of query: 316 length of database: 48,119 effective HSP length: 62 effective length of query: 254 effective length of database: 38,447 effective search space: 9765538 effective search space used: 9765538 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634814|ref|NP_039107.1| ORF FPV144 Putative 17 kDa protein [Fowlpox virus] (152 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150517|ref|NP_150512.1| LSDV078 hypothetical protein [lumpy... 55 1e-010 >gi|15150517|ref|NP_150512.1| LSDV078 hypothetical protein [lumpy skin disease virus] Length = 147 Score = 55.1 bits (131), Expect = 1e-010 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 2/112 (1%) Query: 1 MDHKSRMLLDTIFKDMLNTKDVYALIKYIFKKDPVETIFSXXXXXXXXXXVYNDNVLASD 60 MD + + + T F L T D+ L ++ P +TIFS ++ LAS Sbjct: 1 MDERLKTISMTFFYGELTTTDIMVLKAHLLNIFPNDTIFSINEDNKFIIDFKYNDCLASG 60 Query: 61 YLGMKTTKV--EDCCSCRKVVAVEYMNTSIIDNDLEGYIKQSDKLKRFIKLY 110 Y+ K + E ++A E N +II +D++G+I S KLKRFIK Y Sbjct: 61 YINQKIIPITPEKYNEYSSMIAKELTNYNIIIDDIKGHILSSKKLKRFIKFY 112 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.140 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,169 Number of Sequences: 156 Number of extensions: 726 Number of successful extensions: 5 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 1 length of query: 152 length of database: 48,119 effective HSP length: 55 effective length of query: 97 effective length of database: 39,539 effective search space: 3835283 effective search space used: 3835283 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634815|ref|NP_039108.1| ORF FPV145 Molluscum contagiosum virus MC089L homolog [Fowlpox virus] (103 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.313 0.129 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9637 Number of Sequences: 156 Number of extensions: 371 Number of successful extensions: 4 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 103 length of database: 48,119 effective HSP length: 51 effective length of query: 52 effective length of database: 40,163 effective search space: 2088476 effective search space used: 2088476 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634816|ref|NP_039109.1| ORF FPV146 mRNA Capping enzyme, large subunit [Fowlpox virus] (851 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150518|ref|NP_150513.1| LSDV079 mRNA capping enzyme large s... 905 0.0 >gi|15150518|ref|NP_150513.1| LSDV079 mRNA capping enzyme large subunit [lumpy skin disease virus] Length = 842 Score = 905 bits (2340), Expect = 0.0 Identities = 460/852 (53%), Positives = 624/852 (72%), Gaps = 14/852 (1%) Query: 1 MDKYISKTPLSCYFEELVDTFISVVNSINKVDESKHHEVELILFKPPIITLTNLYNMATT 60 MD+ + LS Y ++V+ + + N + +HEVEL+ +PPIITL+N+YN+++ Sbjct: 1 MDERDLENSLSDYINKIVEIYDEIPNPT--LSNDVNHEVELVFIQPPIITLSNVYNISSV 58 Query: 61 TESYIEFTMLPVDKPNTKFRNRIPLSKIHGLDVKNNQLVESLDGFIWEEKSLLLKKDISD 120 TESYI FT+ + K R ++P+SKIHGLD+KN QLV+ +D IWE+K+L+ +K I Sbjct: 59 TESYILFTVTNKGEC-IKIRTKVPMSKIHGLDLKNLQLVDLIDDIIWEKKTLIKEKKIDK 117 Query: 121 NSSAIIKYSIEEKTLFVDYKRRNASIKLELVSVVRAKLRNIVIDFKMKYFLGSGAQXXXX 180 + II+YS EE+ +F+DYKR +SIKLELV++V+ K++NIV+DFK+KYFLGSGAQ Sbjct: 118 H--CIIRYSSEERHVFLDYKRYTSSIKLELVNLVQTKVKNIVVDFKIKYFLGSGAQAKSS 175 Query: 181 XXXXXXXXHPKNKPSLYIEFEIMMQDKNISKKKLLEELNMSASALFLSHPKYIRLCPSI- 239 HPK+KP+ +EFEI+ ++K S+ LL+EL++ +F++ PK + L I Sbjct: 176 LLHVLN--HPKSKPTPTLEFEIITREKKNSRDILLDELHILFKNIFMADPKNVFLPTVIF 233 Query: 240 -NPILRTHLLKKQDIININTDDLYITSKTDGIFSHVYIEKKSIFCYFSHLGYIKEYTASR 298 +P+ +T +LKKQ+I NI D LYIT+KTDG+ + + I K IFCYF+HL YI +Y R Sbjct: 234 TSPV-KTIMLKKQEIHNIELDKLYITTKTDGVGTLIKINKNGIFCYFTHLNYIIKYNLLR 292 Query: 299 EIEETIYLYAEMRKEESILYLTVIKVLKPCMEDRLSELAFVKNHLTG-IHDRLVFVTKCY 357 + ++T+ LY E K+ ++ +IK+LKP + +R E F+ LT I DR+VF TK Y Sbjct: 293 KFDDTVILYGEAIKQNQKWFIYLIKLLKPELSNRFKERDFLIEKLTSDISDRIVFKTKKY 352 Query: 358 DGPFESSSDLVVSIEEMLKTEQEGIILFYSKGEDSTTDYKVKKDNTIDQCVNVIYRYMSS 417 +GP+E+ S+++ + L + EG+ILFYS+G S DYK+K DNT D +N +YRYMSS Sbjct: 353 EGPYETHSEVIDLLSTYLPLQTEGVILFYSEGNKSKIDYKIKHDNTTDHMINAVYRYMSS 412 Query: 418 EPIVFNDKGSFLEYKRYSNDKGFPKEFSTGKLDLNGSVEYINNIYCIEIKHLNPCTGITN 477 EP++F DK +F+E+K++S+++GFPKE T K+ L +++Y+NNIYCIE K++ G+ N Sbjct: 413 EPVIFGDKYTFIEFKKFSDERGFPKEHGTSKIILGDNIKYLNNIYCIEFKNIYNDVGLKN 472 Query: 478 LVLPIKFIAEFSHNDELIQPRIDKTMKYLYESGYYGNQLSVIMDHLNDQKLRIGDVFEEE 537 +VLPIKFI+EFS N + ++PR+DKTMKY Y+ YYGNQ V+++H+ DQ+LRI D+F+E Sbjct: 473 IVLPIKFISEFSFNGDFLKPRLDKTMKYFYKE-YYGNQYQVVLEHIRDQELRINDIFDEN 531 Query: 538 KLADIAAHMKLKDSMRLNPDGNYFLSNRVRGALGILSNFVKTLLISLYCSKTYLDNHSKR 597 KL+D+ + D RLNP+ +YF + R RG LGILSN++KTLLISLYCSKT+LDN +KR Sbjct: 532 KLSDLGKKY-VDDEFRLNPEVSYFTNKRTRGPLGILSNYIKTLLISLYCSKTFLDNPNKR 590 Query: 598 KVLAIDFGNGADLEKYFYGEIALMVATDPDDNAIETGKKRYNERNAGDKSKYYKFNYIKE 657 KVLA+DFGNGADLEKYFYGEIAL+VATDPD +AI +RYN+ N+G KSKYYK +YI+E Sbjct: 591 KVLAVDFGNGADLEKYFYGEIALLVATDPDKDAISRCIERYNKLNSGIKSKYYKLDYIRE 650 Query: 658 TIRSETYVSSIRQVLYFEKFSLVDWQFAIHYSFHPKHYSTIMTNLQELTESGCKVLITTM 717 TIRS YVS IR+V +F KF +VDW FAIHYSFHPKHYSTIM NL ELT G VLITTM Sbjct: 651 TIRSSVYVSKIREVFFFGKFDIVDWNFAIHYSFHPKHYSTIMKNLSELTAPGGNVLITTM 710 Query: 718 DGDYLDTLKEKKKFIIRKLLPETENYLSIEKIDDDKVLVYNPSSMSKPMAEYIVRRDTLI 777 DGD L L E+K FII K LP +ENY+S+EKI DDK+LVYNPSSMSKPM EYIV++ + Sbjct: 711 DGDKLSYLSERKVFIIHKNLPSSENYMSVEKISDDKILVYNPSSMSKPMEEYIVKKSDIK 770 Query: 778 RVFREYKFKLIDSCNFKTIIDRNISFINGVSRLESRGSTKNFFELNRKALEECNDTDVLE 837 RVF EY F LID NF T+I+R+ FIN VS++E R STKNFFELNR+AL+ N D+ E Sbjct: 771 RVFSEYGFVLIDCVNFDTVINRSKKFINYVSKMEERQSTKNFFELNREALKYDN-IDIEE 829 Query: 838 LLSHYMVYVFSK 849 LL++Y+VYVFSK Sbjct: 830 LLNYYVVYVFSK 841 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.138 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,507 Number of Sequences: 156 Number of extensions: 6251 Number of successful extensions: 36 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 1 length of query: 851 length of database: 48,119 effective HSP length: 70 effective length of query: 781 effective length of database: 37,199 effective search space: 29052419 effective search space used: 29052419 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634817|ref|NP_039110.1| ORF FPV147 HT motif gene family protein [Fowlpox virus] (104 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.139 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,391 Number of Sequences: 156 Number of extensions: 806 Number of successful extensions: 4 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 104 length of database: 48,119 effective HSP length: 51 effective length of query: 53 effective length of database: 40,163 effective search space: 2128639 effective search space used: 2128639 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634818|ref|NP_039111.1| ORF FPV148 Virion protein [Fowlpox virus] (139 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150519|ref|NP_150514.1| LSDV080 putative virion protein [lu... 58 1e-011 >gi|15150519|ref|NP_150514.1| LSDV080 putative virion protein [lumpy skin disease virus] Length = 155 Score = 57.8 bits (138), Expect = 1e-011 Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 9/113 (7%) Query: 26 DINNILKSDYIIVSFCDNGKLFEIYNFDKVARFDNGIIYQQIKNVYKDRHDYLPVIFPSQ 85 DI I ++++ + L+ I+ +D +ARFDNG ++ K +Y++ D L IF + Sbjct: 22 DIEKIYNEKFLLLEKGLDETLYAIHIYDSMARFDNGTFFKIAKFLYRNDIDVLKKIFIDE 81 Query: 86 NILESFNEEFP------IRKESSTL---RIPSANKHPKMILLELFNSFKTNKV 129 +ES N P I ++++ + IP+ ++ +ILL LFNSFK NK+ Sbjct: 82 KKIESTNALLPTYSVNIIERKNALIPLTEIPNGSEGILLILLHLFNSFKFNKL 134 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.325 0.143 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,333 Number of Sequences: 156 Number of extensions: 1153 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 139 length of database: 48,119 effective HSP length: 54 effective length of query: 85 effective length of database: 39,695 effective search space: 3374075 effective search space used: 3374075 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634819|ref|NP_039112.1| ORF FPV149 hypothetical protein [Fowlpox virus] (186 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,383 Number of Sequences: 156 Number of extensions: 1075 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 186 length of database: 48,119 effective HSP length: 57 effective length of query: 129 effective length of database: 39,227 effective search space: 5060283 effective search space used: 5060283 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634820|ref|NP_039113.1| ORF FPV150 N1R/p28 gene family protein [Fowlpox virus] (276 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host r... 93 7e-022 >gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host range protein [lumpy skin disease virus] Length = 240 Score = 93.2 bits (230), Expect = 7e-022 Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 41/244 (16%) Query: 23 IILLKHTEYINVTKLCKIHNKEFYRWKRLISAGRIIETVSRD----ISNQGFESPLVYVN 78 +I++ Y+N+TKLCK K F+ W L S+ +II ++++ + N F V+ Sbjct: 19 VIIVLANNYVNITKLCKPMGKSFHNWWNLKSSYQIICNIAKEEDIEVENLSFN---VWKG 75 Query: 79 RKGNKEFYGFYAHPQLALYIAKWISEDIFNKIKHLINSY------TISDKTVVIKDFSYC 132 ++ KE YG Y HP+L +YI WISE+ KI +IN + I+ T + K ++ Sbjct: 76 QE-TKEVYGKYIHPKLLVYILNWISEEYCAKILSIINEFNSKILNNITTNTKINKIYTRL 134 Query: 133 --DELCPDAIIGKCCKTKSSCEYVHGDICDICGFEALHPTDIDKRLTHEKVCMQLLCKED 190 +E +AI K + S Y F PT + K +EK ++ KE Sbjct: 135 PKEESMFNAIFNK--ENSKSKNYKK--------FLINIPTILSK---YEKYFLESEEKE- 180 Query: 191 IKYDKCGICLDAI---KGNKKPYGILSDCNHMFCINCIKTWMTTINSKKQCPECRVPSKY 247 C +CL+ + + + +GIL +C+H+FCI CI W CP CR + Sbjct: 181 -----CAVCLEKVYDKEYDSMYFGILPNCDHVFCIECINIWK---KENSTCPVCRNEFLF 232 Query: 248 IIQS 251 +I+S Sbjct: 233 VIKS 236 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.139 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,874 Number of Sequences: 156 Number of extensions: 2107 Number of successful extensions: 14 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 1 length of query: 276 length of database: 48,119 effective HSP length: 61 effective length of query: 215 effective length of database: 38,603 effective search space: 8299645 effective search space used: 8299645 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634821|ref|NP_039114.1| ORF FPV151 Deoxycytidine kinase [Fowlpox virus] (235 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,697 Number of Sequences: 156 Number of extensions: 1929 Number of successful extensions: 8 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 235 length of database: 48,119 effective HSP length: 59 effective length of query: 176 effective length of database: 38,915 effective search space: 6849040 effective search space used: 6849040 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634822|ref|NP_039115.1| ORF FPV152 HT motif gene family protein [Fowlpox virus] (127 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.139 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,425 Number of Sequences: 156 Number of extensions: 518 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 127 length of database: 48,119 effective HSP length: 53 effective length of query: 74 effective length of database: 39,851 effective search space: 2948974 effective search space used: 2948974 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634823|ref|NP_039116.1| ORF FPV153 hypothetical protein [Fowlpox virus] (208 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,538 Number of Sequences: 156 Number of extensions: 1231 Number of successful extensions: 4 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 208 length of database: 48,119 effective HSP length: 58 effective length of query: 150 effective length of database: 39,071 effective search space: 5860650 effective search space used: 5860650 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634824|ref|NP_039117.1| ORF FPV154 hypothetical protein [Fowlpox virus] (150 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.317 0.135 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,122 Number of Sequences: 156 Number of extensions: 1024 Number of successful extensions: 10 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 0 length of query: 150 length of database: 48,119 effective HSP length: 55 effective length of query: 95 effective length of database: 39,539 effective search space: 3756205 effective search space used: 3756205 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634825|ref|NP_039118.1| ORF FPV155 N1R/p28 gene family protein [Fowlpox virus] (408 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host r... 64 6e-013 >gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host range protein [lumpy skin disease virus] Length = 240 Score = 64.3 bits (155), Expect = 6e-013 Identities = 40/137 (29%), Positives = 66/137 (47%), Gaps = 11/137 (8%) Query: 15 FCYIQYSGFHLVMMISNCYINASKLCDT--KDFKKWLRLDSSLSLLQEIENTNFPSEKKF 72 F + Y ++++++N Y+N +KLC K F W L SS ++ N E+ Sbjct: 9 FILLNYEKVKVIIVLANNYVNITKLCKPMGKSFHNWWNLKSSYQII-----CNIAKEEDI 63 Query: 73 SIKNSKSVIILEKYYHEEVEGYYIHPDILPHIVGWLSPTFAISMSKFINGY---ISNSFT 129 ++N S + + +EV G YIHP +L +I+ W+S + + IN + I N+ T Sbjct: 64 EVENL-SFNVWKGQETKEVYGKYIHPKLLVYILNWISEEYCAKILSIINEFNSKILNNIT 122 Query: 130 ITEKDDKKYNTLPPSSS 146 K +K Y LP S Sbjct: 123 TNTKINKIYTRLPKEES 139 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,190 Number of Sequences: 156 Number of extensions: 3826 Number of successful extensions: 33 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 1 length of query: 408 length of database: 48,119 effective HSP length: 64 effective length of query: 344 effective length of database: 38,135 effective search space: 13118440 effective search space used: 13118440 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634826|ref|NP_039119.1| ORF FPV156 HT motif gene family protein [Fowlpox virus] (132 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,678 Number of Sequences: 156 Number of extensions: 1382 Number of successful extensions: 11 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 132 length of database: 48,119 effective HSP length: 54 effective length of query: 78 effective length of database: 39,695 effective search space: 3096210 effective search space used: 3096210 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634827|ref|NP_039120.1| ORF FPV157 N1R/p28 gene family protein [Fowlpox virus] (311 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host r... 108 1e-026 >gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host range protein [lumpy skin disease virus] Length = 240 Score = 108 bits (271), Expect = 1e-026 Identities = 70/259 (27%), Positives = 117/259 (45%), Gaps = 39/259 (15%) Query: 35 FDSIKYRDIKVIIMKNNGYVNCSKLCKMRNKYFSRWLRLSTSKALL-DIYNNKS--VDNA 91 F + Y +KVII+ N YVN +KLCK K F W L +S ++ +I + V+N Sbjct: 9 FILLNYEKVKVIIVLANNYVNITKLCKPMGKSFHNWWNLKSSYQIICNIAKEEDIEVENL 68 Query: 92 IVKVYGKGKKLIITGFYLKQNMIRYVIEWIGDDFTNDIYKMINFYNALFGND---ELKIV 148 V+ + + G Y+ ++ Y++ WI +++ I +IN +N+ N+ KI Sbjct: 69 SFNVWKGQETKEVYGKYIHPKLLVYILNWISEEYCAKILSIINEFNSKILNNITTNTKIN 128 Query: 149 SCENTLCPFIELGRCYYGKKCKYIHGDQCDICGLYILHPTDINQRVSHKKTCLVDRDSLI 208 L + + K+ N + + K L++ +++ Sbjct: 129 KIYTRLPKEESMFNAIFNKE----------------------NSKSKNYKKFLINIPTIL 166 Query: 209 -----VFKRSTSKKCGICIEEINKKHISEQYFGILPSCKHIFCLSCIRRWADTTRNTDTE 263 F S K+C +C+E++ K YFGILP+C H+FC+ CI W Sbjct: 167 SKYEKYFLESEEKECAVCLEKVYDKEYDSMYFGILPNCDHVFCIECINIW------KKEN 220 Query: 264 NTCPECRIVFPFIIPSRYW 282 +TCP CR F F+I SR++ Sbjct: 221 STCPVCRNEFLFVIKSRFF 239 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.325 0.142 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,253 Number of Sequences: 156 Number of extensions: 2870 Number of successful extensions: 18 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 2 length of query: 311 length of database: 48,119 effective HSP length: 62 effective length of query: 249 effective length of database: 38,447 effective search space: 9573303 effective search space used: 9573303 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634828|ref|NP_039121.1| ORF FPV158 Photolyase [Fowlpox virus] (464 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.138 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,899 Number of Sequences: 156 Number of extensions: 2751 Number of successful extensions: 17 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 464 length of database: 48,119 effective HSP length: 65 effective length of query: 399 effective length of database: 37,979 effective search space: 15153621 effective search space used: 15153621 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634829|ref|NP_039122.1| ORF FPV159 N1R/p28 gene family protein [Fowlpox virus] (241 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host r... 59 2e-011 >gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host range protein [lumpy skin disease virus] Length = 240 Score = 58.5 bits (140), Expect = 2e-011 Identities = 41/154 (26%), Positives = 70/154 (44%), Gaps = 17/154 (11%) Query: 27 SNNYVNATRLCELRGRKFTNWKKLSESKILVDNVKKINDKTNQLKTDMIIYVKDIDHKGR 86 +NNYVN T+LC+ G+ F NW L S ++ N+ K D ++ + + + + + Sbjct: 24 ANNYVNITKLCKPMGKSFHNWWNLKSSYQIICNIAKEED----IEVENLSFNVWKGQETK 79 Query: 87 DTCGYYVHQDLVSSISNWISPLFAVKVNKIINYY------------ICNEYDIRLSEMES 134 + G Y+H L+ I NWIS + K+ IIN + N+ RL + ES Sbjct: 80 EVYGKYIHPKLLVYILNWISEEYCAKILSIINEFNSKILNNITTNTKINKIYTRLPKEES 139 Query: 135 DMTEVIDVVDKLVGGYNDEIAEIIYLFNKFIEKY 168 + + + Y + I + +K+ EKY Sbjct: 140 MFNAIFNKENSKSKNYKKFLINIPTILSKY-EKY 172 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.317 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,934 Number of Sequences: 156 Number of extensions: 1484 Number of successful extensions: 13 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 2 length of query: 241 length of database: 48,119 effective HSP length: 60 effective length of query: 181 effective length of database: 38,759 effective search space: 7015379 effective search space used: 7015379 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634830|ref|NP_039123.1| ORF FPV160 hypothetical protein [Fowlpox virus] (156 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.317 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,481 Number of Sequences: 156 Number of extensions: 746 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 156 length of database: 48,119 effective HSP length: 55 effective length of query: 101 effective length of database: 39,539 effective search space: 3993439 effective search space used: 3993439 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634831|ref|NP_039124.1| ORF FPV161 N1R/p28 gene family protein [Fowlpox virus] (157 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host r... 52 7e-010 >gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host range protein [lumpy skin disease virus] Length = 240 Score = 52.4 bits (124), Expect = 7e-010 Identities = 31/127 (24%), Positives = 61/127 (47%), Gaps = 13/127 (10%) Query: 13 DGFLILYYDSIEIIVMSCNHFINISALLAKKNKDFNEWLKIESFREIIDTLDKINYDLGQ 72 +GF++L Y+ +++I++ N+++NI+ L K F+ W ++S +II + K Sbjct: 7 NGFILLNYEKVKVIIVLANNYVNITKLCKPMGKSFHNWWNLKSSYQIICNIAK------- 59 Query: 73 RYCEEPYGASHSSVIIEVKASNLIDDRTAGFYVHKDLIPYILTCISIPFSLKVVRVLDTY 132 EE + S + G Y+H L+ YIL IS + K++ +++ + Sbjct: 60 ---EEDIEVENLSFNVWKGQET---KEVYGKYIHPKLLVYILNWISEEYCAKILSIINEF 113 Query: 133 IGEKLEN 139 + L N Sbjct: 114 NSKILNN 120 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.140 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,206 Number of Sequences: 156 Number of extensions: 1068 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 157 length of database: 48,119 effective HSP length: 56 effective length of query: 101 effective length of database: 39,383 effective search space: 3977683 effective search space used: 3977683 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634832|ref|NP_039125.1| ORF FPV162 Ankyrin repeat gene family protein [Fowlpox virus] (603 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 72 4e-015 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 65 5e-013 gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 47 2e-007 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 47 2e-007 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 72.0 bits (175), Expect = 4e-015 Identities = 99/477 (20%), Positives = 185/477 (38%), Gaps = 54/477 (11%) Query: 141 ELVRILVEYGANVNALDNKHNTPLALAAELSNTNKTIETLIELGADVKIKNNDGITPLHL 200 ++V++L+ G NVN L+N+++TPL LSN K L Sbjct: 48 DIVKLLINLGGNVNGLENEYSTPLCTI--LSNIKKYKHML-------------------- 85 Query: 201 AAKSSSDSKTVETLILHGADVNATCSEGNTPLHDAATSYELSNTIEML---IEYGAEVNA 257 V+ LI + ADVN S+G TPL+ ++ + N E+L I+ GAE Sbjct: 86 --------DVVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTL 137 Query: 258 ANSVGDTPLHCAARSRN---PVHKLKTLIAHGSNVNAVNGISVTPLHLATYSDNA----T 310 + G T L ++ + + +K L+ G ++N ++ + N Sbjct: 138 LSKDGYTMLQVYVKTNHHIIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRIDA 197 Query: 311 EALKVLIEHGAEVNSVD-IYGRTPMHYI-SRSYSSQSLKTAVELLVEHGADIEAKNVIGG 368 LK+ +++G + D + + M Y+ S Y ++ +K + + ++ + +G Sbjct: 198 NILKLFVDNGFIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTYINVNQVDELGF 257 Query: 369 TPLSSACNNIEYDLRLIECFIEYGADINTRDIRDETPLYSAIKYPEIVNLLMNYSASTNI 428 PL + ++ + + E I+ G +IN +T L+ A E +L + S Sbjct: 258 NPLYYSVSH--NNRTIFEYIIQLGGNINCISELGDTLLFKAF---ENRSLFIFNSILEKK 312 Query: 429 TNKSNITPLESAIANCIGSAEIIVTQIILDAFRFPDIKNDAIFIRNMKTIEECTMLI--- 485 NK I+ + + + QI D + I + ++++N I Sbjct: 313 PNKKTISYTYYKLRKHLLDVGDFINQIEFDIIK-KFIAHVILYVKNFSVRNRTKAFIYFD 371 Query: 486 DVKESCEYDINKMRSIKFNNMYGLDIFIRXXXXXXXXXXXXXXEDIYLEPGCFLVYGNKL 545 D E C N + + NN + E + + YGN L Sbjct: 372 DFIEKCTKSSNYIHNTYINNETIFQLCFNKKYIPISVISNN--EKLLKKHTKLFYYGNIL 429 Query: 546 RKSVYAAXXXXXXXXXXXXXXXXIT-TDGYWNALPIELKYNILAMLGDNDLFNIVRN 601 +K++ + + T YWN +P+E+K+ I+ L ND+ ++N Sbjct: 430 KKNIEKSKKYYENIYKVSCCISNLCDTCSYWNTIPLEIKFKIVNNLSLNDIEMFLKN 486 Score = 63.2 bits (152), Expect = 2e-012 Identities = 68/322 (21%), Positives = 133/322 (41%), Gaps = 53/322 (16%) Query: 42 RMFVSKGADINVISDFKKTALHYAAKKLATPEVLKTLIYLGTNVNVTDMFESTPL----- 96 ++ + K D N I + Y + + +++K LI LG NVN + STPL Sbjct: 17 KLSIIKSCDPNEIVNEYSLFQKYLQRDSPSVDIVKLLINLGGNVNGLENEYSTPLCTILS 76 Query: 97 HYAVQENGLEATKKLLDLGADPNTKYMNGQTPLHCAAMVIPDGPELVRILVEYGANVNAL 156 + ++ L+ K L++ AD N K +G+TPL+C L Sbjct: 77 NIKKYKHMLDVVKILIENNADVNKKNSDGETPLYC-----------------------LL 113 Query: 157 DNKHNTPLALAAELSNTNKTIETLIELGADVKIKNNDGITPLHLAAKSSS---DSKTVET 213 N + + N + + +I++GA+ + + DG T L + K++ D + ++ Sbjct: 114 SNGY---------IKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIIDIEIIKI 164 Query: 214 LILHGADVNATCSEGNTPLHDAATSYEL----SNTIEMLIEYGAEVNAANSVGDTPLHCA 269 L+ G D+N ++ D Y + +N +++ ++ G + + L Sbjct: 165 LLESGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDNGFIIKKEDKSHKKKLMEY 224 Query: 270 ARS-----RNPVHKLKTLIAHGSNVNAVNGISVTPLHLATYSDNATEALKVLIEHGAEVN 324 S R + I NVN V+ + PL+ + +N T + +I+ G +N Sbjct: 225 LNSLLYDNRRVKKNILDFIFTYINVNQVDELGFNPLYYSVSHNNRT-IFEYIIQLGGNIN 283 Query: 325 SVDIYGRTPMHYISRSYSSQSL 346 + G T + +++ ++SL Sbjct: 284 CISELGDT---LLFKAFENRSL 302 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 65.1 bits (157), Expect = 5e-013 Identities = 105/477 (22%), Positives = 182/477 (38%), Gaps = 43/477 (9%) Query: 142 LVRILVEYGANVNALDNKHN-TPLA--LAAELSNTNKTIETLIELGADVKIKNNDGITPL 198 ++++L++ NVN L N TPL L I LI+ G+++ + Sbjct: 166 VLKLLIKNNVNVNGLTRFRNLTPLHIYLCKGYCLNYSVINFLIDTGSEINCGKETLLYSF 225 Query: 199 HLAAKSSSDSKTVET-LILHGADVNATCSEGNTPLHDAATSYELS--NTIEMLIEYGAEV 255 + K++ T LI GAD+N G TPL +L+ N I+ ++ G Sbjct: 226 FTTCDNEKVFKSLTTKLIKKGADINQKSESGLTPLMGFVAYSDLATPNNIKFILSCGGNQ 285 Query: 256 NAAN-SVGDTPLHCAARSRN-PVHKLKTLIAHGSNVNAVNGISVTPLHLATYSDNATEAL 313 N +T LH R + + + TL+ G N+N+VN + TPLH+ Y D E L Sbjct: 286 LVVNPQSNETLLHIYLRRYDVSLSTISTLLESGININSVNFKNYTPLHV--YVDKNIEHL 343 Query: 314 KV-----LIEHGA---EVNSVDIYGRTPMHYI--SRSYSSQSLKTAVELLVEHGADIEAK 363 + LI GA VN D + +T + + + S + + ++++ I K Sbjct: 344 SLDVVDYLIYKGATTERVNRYDCFAKTILEVFLEKNKFLNNSSRYFINYILKY-FPINEK 402 Query: 364 NVIGGTPLSSA--CNNIEYDLRLIECFIEYGADINTRDIRDETPLYSAI--KYPEIVNLL 419 ++ G TPL S+ NN+ + F+ G+ IN ET + I +Y + ++ Sbjct: 403 DLYGFTPLLSSVYVNNVNF----FNYFLRLGSSINVISEIGETCVSIPIENQYKRFLKIV 458 Query: 420 MNYSASTNITNKSNITPLESAIANCIGSAEIIVTQIILDAFRFPD-IKNDAIFIRNMKTI 478 ++ + T K+ + L N +++ I PD KN K+ Sbjct: 459 LDSKPNIK-TIKATLRYLSDKEFNTRTKFKLMKHCIKYLFTLDPDEYKNHRFIFSKFKS- 516 Query: 479 EECTMLIDVKESCEYDINKMRSIKFNNMYGLDIFIRXXXXXXXXXXXXXXEDIYLEPGCF 538 V C+ DI M+S + D+ YL+ Sbjct: 517 --------VVNECQKDIITMKSTFLKTVSVYDLIFNKNGTMHKRYLNTMEVRKYLKSN-- 566 Query: 539 LVYGNKLRKSVYAAXXXXXXXXXXXXXXXXITTDGYWNALPIELKYNILAMLGDNDL 595 +Y ++R + + + W+ LP E+K NI + D+ Sbjct: 567 -IYAERVRCVINNSIEKDKKIDSIIKKVNILCKHTIWDILPEEIKDNIFNCMSLRDI 622 Score = 43.1 bits (100), Expect = 2e-006 Identities = 75/324 (23%), Positives = 131/324 (40%), Gaps = 40/324 (12%) Query: 41 IRMFVSKGADINVISDFKK-TALH-YAAKKLATP-EVLKTLIYLGTNVNVTDMFESTPLH 97 +++ + ++N ++ F+ T LH Y K V+ LI G+ +N + T L+ Sbjct: 167 LKLLIKNNVNVNGLTRFRNLTPLHIYLCKGYCLNYSVINFLIDTGSEINCG---KETLLY 223 Query: 98 --YAVQENGL---EATKKLLDLGADPNTKYMNGQTPL-HCAAMVIPDGPELVRILVEYGA 151 + +N T KL+ GAD N K +G TPL A P ++ ++ G Sbjct: 224 SFFTTCDNEKVFKSLTTKLIKKGADINQKSESGLTPLMGFVAYSDLATPNNIKFILSCGG 283 Query: 152 NVNALDNKHNTPL--ALAAELSNTNKTIETLIELGADVKIKNNDGITPLHLAAKSSSDSK 209 N ++ + N L + TI TL+E G ++ N TPLH+ K Sbjct: 284 NQLVVNPQSNETLLHIYLRRYDVSLSTISTLLESGININSVNFKNYTPLHVYV-----DK 338 Query: 210 TVETLILHGADV----NATCSEGNTPLHDAATSYE--------LSNTIEMLIEYGAE--- 254 +E L L D AT N A T E L+N+ I Y + Sbjct: 339 NIEHLSLDVVDYLIYKGATTERVNRYDCFAKTILEVFLEKNKFLNNSSRYFINYILKYFP 398 Query: 255 VNAANSVGDTPLHCAARSRNPVHKLKTLIAHGSNVNAVNGISVTPLHLATYSDNATEALK 314 +N + G TPL + N V+ + GS++N ++ I T + + + LK Sbjct: 399 INEKDLYGFTPLLSSVYVNN-VNFFNYFLRLGSSINVISEIGETCVSI-PIENQYKRFLK 456 Query: 315 VLIEHGAEVNSVDIYGRTPMHYIS 338 ++++ + ++ + + Y+S Sbjct: 457 IVLDSKPNIKTI----KATLRYLS 476 >gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lumpy skin disease virus] Length = 447 Score = 46.6 bits (109), Expect = 2e-007 Identities = 35/126 (27%), Positives = 62/126 (48%), Gaps = 6/126 (4%) Query: 313 LKVLIEHGAEVNSVDIYGRTPMHYISRSYSSQSLKTAVELLVEHGADIEAKNVIGGTPLS 372 L L+++GA++N+ Y +HY S S+ ++ ++ L++ GADI K G L Sbjct: 66 LSFLVDNGADLNTKIKYKYNALHYYLYSNSNVTV-DIIKFLIKKGADI-TKKCNGDNVLH 123 Query: 373 SACNNIEYDLRLIECFIEYGADINTRDIRDETPLYSAIKYP----EIVNLLMNYSASTNI 428 + N D ++I+ + D+ R++ D TP+ I+ EI L + + NI Sbjct: 124 TYLCNKNIDFKVIKFLVNKKIDLGDRNLDDHTPVNIYIRNKRNNCEIDTLKLLFLVDFNI 183 Query: 429 TNKSNI 434 NK +I Sbjct: 184 YNKEDI 189 Score = 41.6 bits (96), Expect = 6e-006 Identities = 54/231 (23%), Positives = 85/231 (36%), Gaps = 40/231 (17%) Query: 41 IRMFVSKGADINVISDFKKTALHYAAKKLATPEVLKTLIYLGTNVNVTDMFESTPLHYAV 100 + V GAD+N +K ALHY YL +N NVT Sbjct: 66 LSFLVDNGADLNTKIKYKYNALHY---------------YLYSNSNVT------------ 98 Query: 101 QENGLEATKKLLDLGADPNTKYMNGQTPLHCAAMVIPDGPELVRILVEYGANVNALDNKH 160 ++ K L+ GAD TK NG LH ++++ LV ++ + Sbjct: 99 ----VDIIKFLIKKGAD-ITKKCNGDNVLHTYLCNKNIDFKVIKFLVNKKIDLGDRNLDD 153 Query: 161 NTPLALAAELSNTNKTIETL-IELGADVKIKNNDGI------TPLHLAAKSSSDSKTVET 213 +TP+ + N I+TL + D I N + I L + S + Sbjct: 154 HTPVNIYIRNKRNNCEIDTLKLLFLVDFNIYNKEDIFLSALDVFLDYLKSYTRKSLDIVN 213 Query: 214 LILHGADVNATCSEGNTPLHDAATSYELSNTIEMLIEYGAEVNAANSVGDT 264 IL +N+ S G P+ A S + + ++ G +N S G+T Sbjct: 214 YILENISINSVDSNGFNPILYATVSGQ-KVFFDYFLKLGCSINITTSCGET 263 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,060 Number of Sequences: 156 Number of extensions: 3011 Number of successful extensions: 56 Number of sequences better than 1.0e-005: 4 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 16 length of query: 603 length of database: 48,119 effective HSP length: 67 effective length of query: 536 effective length of database: 37,667 effective search space: 20189512 effective search space used: 20189512 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634833|ref|NP_039126.1| ORF FPV163 N1R/p28 gene family protein [Fowlpox virus] (263 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host r... 48 3e-008 >gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host range protein [lumpy skin disease virus] Length = 240 Score = 48.1 bits (113), Expect = 3e-008 Identities = 28/125 (22%), Positives = 55/125 (43%), Gaps = 8/125 (6%) Query: 10 DIDSHFCYIKYDGITLTMMKDNGYINATQLCMLGNKDFKEWIKLDHSXXXXXXXXXXXXX 69 D + F + Y+ + + ++ N Y+N T+LC K F W L S Sbjct: 4 DSRNGFILLNYEKVKVIIVLANNYVNITKLCKPMGKSFHNWWNLKSSYQIICNIAKEEDI 63 Query: 70 XXXXYVKAVISVRSDYYNSETSNDIKGFYIHGNIMPHICAWISSKFAIKVSNIVHNYLND 129 V ++ + + + + ++ G YIH ++ +I WIS ++ K+ +I+ N N Sbjct: 64 E-------VENLSFNVWKGQETKEVYGKYIHPKLLVYILNWISEEYCAKILSII-NEFNS 115 Query: 130 RYVQN 134 + + N Sbjct: 116 KILNN 120 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,529 Number of Sequences: 156 Number of extensions: 1738 Number of successful extensions: 11 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 1 length of query: 263 length of database: 48,119 effective HSP length: 60 effective length of query: 203 effective length of database: 38,759 effective search space: 7868077 effective search space used: 7868077 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634834|ref|NP_039127.1| ORF FPV164 hypothetical protein [Fowlpox virus] (383 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,445 Number of Sequences: 156 Number of extensions: 2028 Number of successful extensions: 3 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 383 length of database: 48,119 effective HSP length: 63 effective length of query: 320 effective length of database: 38,291 effective search space: 12253120 effective search space used: 12253120 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634835|ref|NP_039128.1| ORF FPV165 Late transcription factor, VLTF-3 [Fowlpox virus] (225 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150531|ref|NP_150526.1| LSDV092 putative late transcription... 355 e-101 >gi|15150531|ref|NP_150526.1| LSDV092 putative late transcription factor [lumpy skin disease virus] Length = 232 Score = 355 bits (912), Expect = e-101 Identities = 170/224 (75%), Positives = 191/224 (84%), Gaps = 1/224 (0%) Query: 3 NLKHCSNCKHNGLITESNHEFCIFCQSIFQ-LSNKVSKKSNFHVSNKLIHLRNVLRRLLS 61 NLK CS C HNG+++E +EFCIFC+S+FQ S V KKSNFHVSNKLIHLRNVLRRLLS Sbjct: 9 NLKMCSGCFHNGIVSEQGYEFCIFCESVFQKYSKSVQKKSNFHVSNKLIHLRNVLRRLLS 68 Query: 62 NQCSSDVIVELKSVMTKNNISSTDIDANFVSSFLKANEKINKKDYKLVFEIINHIKEEKL 121 NQCS ++I EL +M KN ISS D+DANFVSSFLKA+E+INKKDYKLVFEIIN +K EKL Sbjct: 69 NQCSGEIISELLDLMKKNQISSEDVDANFVSSFLKAHERINKKDYKLVFEIINQVKSEKL 128 Query: 122 NLDTSKINEVIEIFKHLVFFCQENTPSKTINYSFFLDKIFSLTSVTNNLKPQTVKNYTKN 181 NL T KINEV+EIFKHLVFFCQENTPSKTINYSFFLDKIF +T VT NLKPQTVKNYTKN Sbjct: 129 NLTTEKINEVVEIFKHLVFFCQENTPSKTINYSFFLDKIFDITLVTKNLKPQTVKNYTKN 188 Query: 182 NSNQLVWENFLDYMKKKKINTSVYDYGHEYVFVDYGFTTCSLEV 225 NSNQL+WENFL YMK KK ++ D+GHEYVF D FTTCSL++ Sbjct: 189 NSNQLIWENFLIYMKNKKKTANIIDFGHEYVFTDEKFTTCSLDI 232 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,167 Number of Sequences: 156 Number of extensions: 2187 Number of successful extensions: 23 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 1 length of query: 225 length of database: 48,119 effective HSP length: 59 effective length of query: 166 effective length of database: 38,915 effective search space: 6459890 effective search space used: 6459890 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634836|ref|NP_039129.1| ORF FPV166 Molluscum contagiosum virus MC105L homolog [Fowlpox virus] (72 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150532|ref|NP_150527.1| LSDV093 hypothetical protein [lumpy... 67 7e-015 >gi|15150532|ref|NP_150527.1| LSDV093 hypothetical protein [lumpy skin disease virus] Length = 75 Score = 67.0 bits (162), Expect = 7e-015 Identities = 31/69 (44%), Positives = 45/69 (64%) Query: 3 EYKYSIDPPVRCSNCSNNLVEYLKSDRQLIKLMLNNNEYKKNILKQFLIFSRNKTLLTKI 62 +YK +D P +CS C +NL E++ D + IK++L + K +ILK FL RNK + KI Sbjct: 6 KYKVDLDKPQKCSKCLSNLFEFITEDEKTIKMVLESQPNKLSILKNFLTSCRNKDFIYKI 65 Query: 63 LDPEIRRVL 71 LD E++RVL Sbjct: 66 LDKELQRVL 74 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.137 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,063 Number of Sequences: 156 Number of extensions: 608 Number of successful extensions: 5 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 1 length of query: 72 length of database: 48,119 effective HSP length: 48 effective length of query: 24 effective length of database: 40,631 effective search space: 975144 effective search space used: 975144 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634837|ref|NP_039130.1| ORF FPV167 Virion core protein P4b [Fowlpox virus] (657 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150533|ref|NP_150528.1| LSDV094 putative virion core protei... 630 0.0 >gi|15150533|ref|NP_150528.1| LSDV094 putative virion core protein [lumpy skin disease virus] Length = 661 Score = 630 bits (1626), Expect = 0.0 Identities = 332/674 (49%), Positives = 455/674 (67%), Gaps = 31/674 (4%) Query: 1 MESDSNIAIEEVKYPNILLEPVYYNN-LEVIGSHLHKPDKNNLCNVCDVL-NKITEEDVI 58 MES +I + + L Y N L ++ +H+H P + C++C+ L N T +D+I Sbjct: 1 MESSKDIFLTS----KVNLHTEYKNQTLSLVDNHVHTPITSLSCSICNSLSNFATSDDII 56 Query: 59 SAGAKQQR-PMRLR--SKPKPDICKGVSDSVKQKNT---IINIDEITSTHDWQYNLRKDA 112 SAGA+Q+ PM+ R SK K + + K+++T + IDE+ ST+DWQ LRKD Sbjct: 57 SAGARQRSLPMKRRILSKDKTNETSSPCPNNKKEDTDTATVPIDEVASTNDWQVKLRKDG 116 Query: 113 DAIVRYLMDRKCDINNFTIQDLIRVMRELNIIRNERQELFELXXXXXXXXXXXXXXXXXX 172 + I RYL D KC+++NFTIQD++ +MR+LNI+R+ R ELFEL Sbjct: 117 NMIARYLTDNKCNVSNFTIQDMLTIMRKLNIMRSNRNELFELLAHVKSSLTNSSMSVKST 176 Query: 173 XPLMVIYSHSDNKIGEQLKLLENTYDPSRYQALIDTTRFQSTNFVDMSTSSDMLFRFKDQ 232 PL++I+SH+ KIGEQLK LE Y P++ + L+ TTRFQS +FVDMS+SSD+ F ++D Sbjct: 177 HPLVLIHSHAHPKIGEQLKELEKLYSPTKQEILLSTTRFQSIHFVDMSSSSDLAFHYRDN 236 Query: 233 DSIGYVHPILVALFGVKLPALENAMVLGDSYSLMKQLYNSKKVKPENYMLLINRLTEDSP 292 +S Y+HPI ++LFGVKLPALEN V GDSYSL++QLY+ KKV P+NYMLL+NRLTE++P Sbjct: 237 ESTYYIHPIFMSLFGVKLPALENTFVYGDSYSLLQQLYDYKKVNPDNYMLLVNRLTEEAP 296 Query: 293 IIFTGINDSVSSEIHRASIHTMLRKTILNLRLGIFYSKDCDLVDNHLMKIIHINSSQMMA 352 I+FTGI+D +S+EI RA+IHTM++K I+ +R+GIFY D + +D LMKIIH N S++M+ Sbjct: 297 IVFTGISDVISTEIQRANIHTMIKKLIMRMRMGIFYCSDEESIDPFLMKIIHTNCSEVMS 356 Query: 353 DEEQMLASILSIVGFRPALVSITDP--YQPLNVVLKPVSYIVVSPSKMITTXXXXXXXXX 410 DEEQ++ASILSIVGF+P LVSI P + L+ V YIV++P KMITT Sbjct: 357 DEEQIIASILSIVGFKPTLVSIPKPGFMNNYEMQLQSVPYIVINPMKMITTSNCPISINT 416 Query: 411 XXXXXLSFDNTTGRVMFMPANMRYQGTISCRT-----VDALPVLNSISHDRIINSPVIVN 465 L+FD TGRV+F P N+ Y + + P +++IS SPVIVN Sbjct: 417 GNINSLTFDGNTGRVVFAPPNIGYGYSNPLENHFNAFGNNFPTISNIS------SPVIVN 470 Query: 466 GTLIYYIERRQNKNIVSGECFTGFRSVINDRPMDIANELNINGITYLLKSAVCYKTHDLL 525 G LI+Y+ERRQ++N GEC+TG+RS+IND P++++ E+ INGI Y LKSAVCYK D Sbjct: 471 GVLIFYVERRQHRNTFGGECYTGYRSIINDSPIELSQEVVINGIMYKLKSAVCYKVGD-- 528 Query: 526 STMSGSCDGGDVFLKGYYTILFTEMGPWMYDPLSIYSKQSRESRLMRVMKNQYYKEHGN- 584 + + D+FLKG+Y+I+FTE+GPWMYDPLS ++K SR+SR+MR +KNQY K N Sbjct: 529 NFFECHTNNTDIFLKGHYSIIFTELGPWMYDPLSFFNKSSRDSRMMRSLKNQYRKTSNNN 588 Query: 585 --DDGMFYDWLKEESTKKLCDIKQQQLMHHTVMFEDDLLSHEEAMNLISRNCCILVYAQD 642 D+ FY+WLK E KQQ LM+H MF+DDLL EEAM+LISR CC+L+Y+QD Sbjct: 589 QLDESDFYEWLKGEGASFFLS-KQQMLMNHITMFDDDLLKMEEAMSLISRQCCMLIYSQD 647 Query: 643 YLPYLATKSITEIF 656 Y Y+ K+ITE+F Sbjct: 648 YDSYITAKNITELF 661 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,961 Number of Sequences: 156 Number of extensions: 3595 Number of successful extensions: 17 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 1 length of query: 657 length of database: 48,119 effective HSP length: 68 effective length of query: 589 effective length of database: 37,511 effective search space: 22093979 effective search space used: 22093979 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634838|ref|NP_039131.1| ORF FPV168 Immunodominant virion protein [Fowlpox virus] (288 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.310 0.129 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,981 Number of Sequences: 156 Number of extensions: 1183 Number of successful extensions: 9 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 288 length of database: 48,119 effective HSP length: 61 effective length of query: 227 effective length of database: 38,603 effective search space: 8762881 effective search space used: 8762881 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634839|ref|NP_039132.1| ORF FPV169 RNA polymerase subunit RPO19 [Fowlpox virus] (167 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150535|ref|NP_150530.1| LSDV096 RNA polymerase subunit [lum... 144 1e-037 >gi|15150535|ref|NP_150530.1| LSDV096 RNA polymerase subunit [lumpy skin disease virus] Length = 170 Score = 144 bits (364), Expect = 1e-037 Identities = 70/130 (53%), Positives = 100/130 (76%), Gaps = 5/130 (3%) Query: 42 KQSDSRIES---FKFDETTQS--PHPKQLSERIKAIKQRYTRRISLFEITGILSESYNLL 96 KQS+ ++ S ++T Q + +S +I AIK+RYTRR+SLFEITGI++ESYNLL Sbjct: 40 KQSNYKVGSSISINIEDTNQQNITNASLISSKISAIKKRYTRRVSLFEITGIIAESYNLL 99 Query: 97 QRGRIPLLNDLTEETFKDSIINIMFKEIEQGNCPIVIQKNGELLSLTDFDKKGVQYHLDY 156 QRGR+PL+ +L+++T K I++I+ +EI++G CPI+I+KNGELLS+TDFDKKG+ HLDY Sbjct: 100 QRGRMPLVLNLSDDTMKQKILHIVIEEIKEGTCPIIIEKNGELLSVTDFDKKGLYNHLDY 159 Query: 157 IKTIWRNQRK 166 I IW+ Q + Sbjct: 160 IINIWKKQNR 169 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,574 Number of Sequences: 156 Number of extensions: 607 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1 length of query: 167 length of database: 48,119 effective HSP length: 56 effective length of query: 111 effective length of database: 39,383 effective search space: 4371513 effective search space used: 4371513 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634840|ref|NP_039133.1| ORF FPV170 [Fowlpox virus] (374 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150536|ref|NP_150531.1| LSDV097 hypothetical protein [lumpy... 334 3e-094 >gi|15150536|ref|NP_150531.1| LSDV097 hypothetical protein [lumpy skin disease virus] Length = 375 Score = 334 bits (856), Expect = 3e-094 Identities = 158/370 (42%), Positives = 251/370 (67%) Query: 1 MEKFRNAFIEFYELSKKYLENSTGQKVYEVNYDNDIDSFLTVFPILESKIGGDINCAMSD 60 M+K R + +F+ +SKKYLE T + N+++D+ + + P+LE KI I+ + D Sbjct: 1 MDKLRTLYYDFFNISKKYLEKETNVLTSDPNFESDVSILMNLVPVLEKKISSTISVSTKD 60 Query: 61 ETVILAMQQVEFKMFTFWYMRSAANVKSMLNKITDKETKEQFIRIFKDMLVYAKVITSIN 120 E +IL M+ +K+F+FW+++S A VKS+ NK+ + KE+F IFKDML+ + + SIN Sbjct: 61 EDIILMMKYCNYKLFSFWFLKSDAVVKSVYNKLELENEKEKFKTIFKDMLINVQTLISIN 120 Query: 121 NMYSNMKKDTNEIVQDLKKILGIVSLIKSANNEHQAYKILMENNSFIIRTINKVLADSNY 180 NMY N+K+DT EIV D KKI+ I++ IK+ N E AYK+L N+SFI++TINK+L+D NY Sbjct: 121 NMYINLKQDTAEIVSDSKKIIDIINQIKNTNCESSAYKLLQNNHSFIVKTINKILSDENY 180 Query: 181 IIKIIALFNTDVVSDKIKLEEYKDVFSFSKENVIFGIKCFCDITIDGIDQINNKYVSFFK 240 ++KIIA+F++ +V+DK KL EY+++F+ S E++I GIKC D+ I ID NNKY+ FFK Sbjct: 181 LLKIIAVFDSKLVTDKSKLTEYREIFTISTESIIHGIKCISDLEISTIDVDNNKYIMFFK 240 Query: 241 KVLPNIILFQTSCVKTTQFVNIFSKLSSIVYSEILTNERLHVLFSEIMASFKTKVSVEDL 300 K+L +ILFQ + + + +F+ I +KL S++ + TN + L ++++ S KTK+S++D+ Sbjct: 241 KILGTVILFQNNDLNSQKFIYIVAKLYSLINQQFKTNPNVGYLLTDVLDSIKTKISIDDI 300 Query: 301 KKRKVNNIQGLISEISNNREMYKNIFVEEYEKHKTTLISIVQCITDNYNINYKENAVDIE 360 K++ VNN+Q LI IS+N+ YK+I EEY K + +I I+Q I++ I Y +DI Sbjct: 301 KQKGVNNLQSLIRFISDNKSSYKSILSEEYIKREGEIIEILQNISNESKIEYCGEIIDIR 360 Query: 361 FIFDFIQEHY 370 + ++ + Sbjct: 361 KLIKITKDRF 370 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.137 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,421 Number of Sequences: 156 Number of extensions: 3395 Number of successful extensions: 27 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 1 length of query: 374 length of database: 48,119 effective HSP length: 63 effective length of query: 311 effective length of database: 38,291 effective search space: 11908501 effective search space used: 11908501 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634841|ref|NP_039134.1| ORF FPV171 Early transcription factor large subunit, VETF-L [Fowlpox virus] (709 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150537|ref|NP_150532.1| LSDV098 putative early transcriptio... 902 0.0 >gi|15150537|ref|NP_150532.1| LSDV098 putative early transcription factor large subunit [lumpy skin disease virus] Length = 714 Score = 902 bits (2332), Expect = 0.0 Identities = 444/711 (62%), Positives = 560/711 (78%), Gaps = 13/711 (1%) Query: 2 YVVNPQLVVLVDKDQEILDVLYLTLYDGIDERSSMYYFIKNHLRVPMDRVRVLKKHIILT 61 Y+V+PQLV+ V K QEI LYLT Y +D++S +YYF+ + L++ V L +HI+LT Sbjct: 3 YIVSPQLVLYVGKSQEIKRALYLTPYGVLDDKSPIYYFLTSCLKITTPEV--LTRHILLT 60 Query: 62 LKISQVKGYICDLLNIDEEIIIYSHKNNLEYSYVDNTTFNPFTMTQRKTLLKSKSFLYNV 121 LK+ Q+KGY+CDLLNID++IIIYSHKNNLEYSYVDNT FNPF TQRKTL+KS FLYN+ Sbjct: 61 LKMRQLKGYLCDLLNIDDDIIIYSHKNNLEYSYVDNTIFNPFVHTQRKTLIKSDGFLYNI 120 Query: 122 YVDACNFLVIWVAKAADTMVKELGSYEEVDANVLKFESRLIEMFPDLDLDFTVESKFNNV 181 Y DAC+FLVIWVA A DT + E GS+EEVD N+LKFESRL+++FP +DLD TVESKFNN+ Sbjct: 121 YPDACDFLVIWVANANDTSIPEFGSHEEVDNNILKFESRLLDVFPSMDLDMTVESKFNNI 180 Query: 182 FRTNLKMTGLKNIV-----LSNTDKKILFIKSDEYFINLSGNHFVINDESLNLSIWDDDG 236 FRTNLK TGLKNI+ L + K L KSDE+FIN++GN F++ DE +NLS+WD DG Sbjct: 181 FRTNLKFTGLKNIIKKVNELKECNYKSLLYKSDEFFINITGNKFILTDEKINLSVWDTDG 240 Query: 237 SLAISSDGNTITVNNVKLFTDMIPNNNVQMERIKSDITYKVKLSTPITSKVKLDIETSFI 296 +LA SSDG+TI +NNVKLFT ++ + + QMERIK D+TYK+ LSTPITS++KLDIETSFI Sbjct: 241 TLAFSSDGDTIMINNVKLFTSLLSDIDTQMERIKCDVTYKIFLSTPITSRIKLDIETSFI 300 Query: 297 FIETATNNILLSVDKKISIILAKNHISIKVKNHIPNIEKYFTFLVVFINRLFNTVKQSMD 356 F+ETATNNILLS DK+ISIILAKNHISIKVKN+IPNIEKYFTFLV+ +N +FN ++QS D Sbjct: 301 FVETATNNILLSSDKRISIILAKNHISIKVKNYIPNIEKYFTFLVIAVNNMFNNIQQSSD 360 Query: 357 FTKIETIYWSRICQNTKDKNRKPVIISSLEPDMLKVSDNFYKSPTKEVFVNNNEVMFTCD 416 FTK+ET+YWSRICQNTK+K+RKPVI+SSLE DM K+SDNFYKS TKEVFVN+N +MF+C Sbjct: 361 FTKVETVYWSRICQNTKNKHRKPVIVSSLEGDMKKISDNFYKSRTKEVFVNSNGIMFSCL 420 Query: 417 DKTGKYNNIGFLAIFYKLQKICIPCCFLKNQSHTDTFMACVHNKQTDKNIISPYILNYGK 476 D GKYNNIGFL+IF++LQK+CIPCCFLK+QSHT+TF +CV+ K N+I+PYILN+GK Sbjct: 421 DPLGKYNNIGFLSIFHRLQKMCIPCCFLKDQSHTETFSSCVYQKDIISNVINPYILNFGK 480 Query: 477 VVTDSKIAFLPPIFNDFFNSDLSISLESDNKRLKSTKGYHVIRSCLHNCRYYTLKRIRTK 536 VVT SKI+FLP IF+ FFN L I E DNKRLK T GYHV++SC + +KRIRT Sbjct: 481 VVTTSKISFLPIIFDTFFNDGLKIIFEQDNKRLKETSGYHVVKSCENE----NIKRIRTI 536 Query: 537 NDIIQFVNTENVTLIANDIVYFPMKYSSINNKIYILVQEIVHEIVIAKKEEDKDMIYFEE 596 +DII FVN + LI++DIVYFPM Y I NK+YIL+QEIVHEIV+ KK DKD+I Sbjct: 537 SDIISFVNEDKNILISDDIVYFPMNYFDIGNKVYILIQEIVHEIVMVKKTLDKDIIEIFP 596 Query: 597 LRTNKLRDMFPYKVKTVDIKEQNGLKLTTDGFYVDGELFTEPLSTKRSVFMDNISTQNNP 656 ++D+FP + K++ I+ +G+ LTTDGF +DG+ F + LS+ F NI+T + Sbjct: 597 PNYKIIKDLFPRQTKSIIIRSDSGMDLTTDGFLIDGKEFNQDLSSNYVTFTKNITT-SYK 655 Query: 657 IVKYFNSVFKYVVTDNKEIFIKTWVINTMLKLGIGKDYTHIQIKSILEKYY 707 + KYF+ + KYVVT++K+ F KTW+IN MLKLG+ + I + LEKYY Sbjct: 656 LHKYFSPLLKYVVTESKDRFTKTWLINIMLKLGLDIEMDP-SILTKLEKYY 705 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,957 Number of Sequences: 156 Number of extensions: 6384 Number of successful extensions: 62 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57 Number of HSP's gapped (non-prelim): 1 length of query: 709 length of database: 48,119 effective HSP length: 68 effective length of query: 641 effective length of database: 37,511 effective search space: 24044551 effective search space used: 24044551 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634842|ref|NP_039135.1| ORF FPV172 Intermediate transcription factor, VITF-3 [Fowlpox virus] (301 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150538|ref|NP_150533.1| LSDV099 putative intermediate trans... 239 7e-066 >gi|15150538|ref|NP_150533.1| LSDV099 putative intermediate transcription factor subunit [lumpy skin disease virus] Length = 290 Score = 239 bits (610), Expect = 7e-066 Identities = 115/293 (39%), Positives = 194/293 (65%), Gaps = 5/293 (1%) Query: 1 MYEIVPDLDTSMSLELGDFKLSTTRTKPREEDNQYYLSKNRRMYVCSSKGSERAKSLGFF 60 M++ VPDL+ ++E+GD + T ++ Y SK+RR+++ +K ER +L FF Sbjct: 1 MFDPVPDLNLEANIEIGDVNIDKI-TSGEASESLSYASKSRRLFIHKTKDEERKLALRFF 59 Query: 61 LSKIPFLNYKEKNYMFQKMDNINNIQLTKKNNVISAPYVILINLSANGFKFTESFLEIYF 120 L ++ FL+YKE NY+F+ +D + ++ +TKKNN+I APY+IL+ + + G+K +ES +E++F Sbjct: 60 LPRMYFLSYKEVNYLFRCIDAVKDVAITKKNNIIVAPYMILLIMDSKGYKLSESMIEVFF 119 Query: 121 PEIYKESSKKFKFNTQIQLIQEKLGYEHSSYYNIEFEHYYTTVCLILQSKRNMEKEDPEL 180 PE+Y E+SKKFKF +QI IQEKLGY ++Y+ +FE YY+T L L ++N E + + Sbjct: 120 PELYNENSKKFKFTSQICSIQEKLGYNVTNYHTYDFESYYSTFALTL--RKNTESD--II 175 Query: 181 FDIREMSPILKSLSEITYKLYVLYIKSKFVQWSISSSAVVTQLVNTVLITVYNLVTKFIT 240 F+ R S + SLSE+TY+ Y++ +K+ VQWS S+ +VV Q++NTVLIT+Y ++ + Sbjct: 176 FNTRNESEFISSLSEVTYRFYIILLKNNLVQWSSSTGSVVNQMINTVLITIYEILKQKER 235 Query: 241 ENKTFKCKLAHNNELPIDMLVSYYEEFSEIITNLMKLNRYRINKHIQETLLSF 293 + K + C LA+ + P L+ F +II+++ N ++++K + LL++ Sbjct: 236 DRKKYICHLANETKFPSVFLLDRMNLFDKIISDIKSTNSFKVSKRDKSILLTY 288 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,219 Number of Sequences: 156 Number of extensions: 2338 Number of successful extensions: 15 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 1 length of query: 301 length of database: 48,119 effective HSP length: 61 effective length of query: 240 effective length of database: 38,603 effective search space: 9264720 effective search space used: 9264720 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634843|ref|NP_039136.1| ORF FPV173 [Fowlpox virus] (76 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150539|ref|NP_150534.1| LSDV100 putative IMV membrane prote... 68 4e-015 >gi|15150539|ref|NP_150534.1| LSDV100 putative IMV membrane protein [lumpy skin disease virus] Length = 78 Score = 67.8 bits (164), Expect = 4e-015 Identities = 30/76 (39%), Positives = 48/76 (62%) Query: 1 MSCYSSILNSISTLAFLQVASNVIELVRHCIMHFCETRIRCNTLAFVILKILITMVIYFM 60 M CY +IL SI LA QVA+ +++ RH M+FCE R N+ FVIL+ + TM+++ + Sbjct: 1 MLCYFTILKSIGGLALFQVANGAVDIFRHVFMYFCENNFRPNSFWFVILRSIFTMIMFLI 60 Query: 61 IGLGLFYLAKNGTEAE 76 +G+ L ++ N + E Sbjct: 61 LGIVLLSISNNENKKE 76 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.335 0.143 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7620 Number of Sequences: 156 Number of extensions: 236 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 1 length of query: 76 length of database: 48,119 effective HSP length: 52 effective length of query: 24 effective length of database: 40,007 effective search space: 960168 effective search space used: 960168 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634844|ref|NP_039137.1| ORF FPV174 Virion core protein P4a [Fowlpox virus] (891 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150540|ref|NP_150535.1| LSDV101 putative virion core protei... 647 0.0 >gi|15150540|ref|NP_150535.1| LSDV101 putative virion core protein [lumpy skin disease virus] Length = 904 Score = 647 bits (1670), Expect = 0.0 Identities = 367/915 (40%), Positives = 543/915 (59%), Gaps = 35/915 (3%) Query: 1 MMLIKNIVTLDQLESSDYLYKLISSVLPSLCLDYKIDPKLANGYVHALDTIYSPELISIL 60 MM I + TLDQLE S+YL+K+ISS+LPSLCLDYK+D L YVH D + P+ I Sbjct: 1 MMPINAVTTLDQLEDSEYLFKVISSILPSLCLDYKVDENLKTSYVHPFDVLLHPDYGKIC 60 Query: 61 TDGERSQQLDTLGINYIL----SRKNDLGIYFPINIRENGEIVSTWNKNTGGYTNPIPCT 116 + E ++ LGINY+L S K + P I N + + N NPI T Sbjct: 61 DENEIQNSIEKLGINYLLDVYSSNKLFHNVINPGYITPNDVVPKFDSSN-----NPIVNT 115 Query: 117 ISFNDLPPFTKILIQIRTMGCEAHARYFGGYVEHPSSPNI---LSPKINPNISFANSYIH 173 SFNDLP FT+ L+ R E ++R+ GGYV+ P + KI+P+++F N+Y+ Sbjct: 116 HSFNDLPKFTRELLMYRLKYPEYNSRFVGGYVK-PVEGGFDIQVEEKIHPDLNFENTYLL 174 Query: 174 SLTYPYIEGRADYSTYRPLLINGIMEKKDLANLLNVRALLEPMSRAIFDAIFKIQFHCNA 233 +L Y + + +R NG+M +D NLL VR +++ S FD FK+ Sbjct: 175 NLLYKDVLSTS-IQGFRVRKSNGVMFYRDFENLLGVRRVIDARSINKFDEEFKMFDAAID 233 Query: 234 NNIVLVQNPN-IDTDLITMQTLKYLVMYFQHFSGFTLRDIYLGGVRIRVDNSM--LASYV 290 +N L +DTD++TM ++K+ ++Y+Q+FS + Y+ V NS+ L S + Sbjct: 234 HNTTLPPFQRAMDTDILTM-SMKHFIIYYQYFSN-EYENSYVTFNGDYVLNSIPDLISII 291 Query: 291 VSIYFSKEI-KYIE-DNKLFSLDYIDQFVFRPDNSNLNITVTAQQLGIRILNMTSNRPYI 348 S+ F +I K IE L DY D + +N I L I+ ++++ Y Sbjct: 292 TSMRFQDQIPKLIELYPDLTVQDYADLLLLDTATNNRYIH-RLNNLNIKYVDISGRDHYY 350 Query: 349 INLLNIVSKSLVRHRNVPKEISLFWDGMSYDEYKNMKFIDMMFLGTTCYLFALYNKNGIT 408 INLLN+++K R R + ++SLFWDG+ Y EYK+ K D++F TCY+ AL+NKNG T Sbjct: 351 INLLNLLAKES-RSRKLTSKLSLFWDGIDYQEYKSKKISDIIFYNATCYVMALFNKNGTT 409 Query: 409 YCSMLNDVLRAEETPIRICVFPRILKGKTIPTXXXXXXXXXXXXSVRDFPKYDTHDVKHI 468 YCSML+DV+ + ETP+R+C+ PR+L GKT+ S +DFPK + HI Sbjct: 410 YCSMLSDVISSNETPLRVCLLPRVLSGKTVSKLISEVLESVNSISKKDFPKRPASKLMHI 469 Query: 469 GLSDAGFMLFFQFLRLMENKEPHIAVKEILMAYTGIKIDDKGSPYYITPESYRTFIFMLF 528 GLS+ FM FFQ LRL+ NK P +++KE+LM Y G+KIDD GSP+ I ESY+ F +LF Sbjct: 470 GLSENSFMRFFQLLRLITNKSPELSIKEVLMLYAGLKIDDNGSPHLIKKESYQDFSILLF 529 Query: 529 KAMGFNVRVNRXXXXXXXXXXXXXXPRVSKRYLTNMLQKASCSQSEAEKLLSSAHDLVSF 588 AMGF V + + PRVSK+Y+ NML KASC++ EA+KL+S+++DL+ F Sbjct: 530 SAMGFKVSIKKSIIGSNNHTIISVRPRVSKQYIHNMLVKASCTKEEADKLISASYDLLHF 589 Query: 589 MLSVNNSSNRDSYRRINR-----SFFGGFKESAS-----EEDATLVQFISPVNILDRINV 638 M+S + N Y F+GG + +S +E+ TL+ P+NILDRI++ Sbjct: 590 MVSAGDYRNYQEYYYTKNFFPSYFFYGGNPQDSSLPQNVDEETTLIHISEPINILDRIDI 649 Query: 639 KGILSANALNEIMDTDVFLPENANFKENLKQLLKEDTIDGKSIAHIIPLNTIDRLIVSAG 698 +GI SAN +E+M D F PEN FK+NL+ L++++ + G ++ +PLN +D+LI AG Sbjct: 650 RGIFSANTTDEMMTVDAFGPENIVFKKNLENLIRDNKLSGDTLLQTMPLNILDKLITVAG 709 Query: 699 --GVSVGELLENLDERVPDENATNEVIELITNALKDRNMKDSNFIATNILNSITQISEKQ 756 VS +L++ + D ++TN++ ELI ALK+ K + + T NS+ +S+KQ Sbjct: 710 SCNVSFNDLIDGISNENDDCDSTNDITELINTALKENYAKKNTSLVTQTFNSVASVSQKQ 769 Query: 757 MDGIKKITCHGTMMFKELAMHIYFTERYFKAKISDDVKISILEKYRDFIELSKSLYKDLI 816 + IK+ +C +FK LA IY E+ F AK+SDDVK+ +LEK + F LSKSLY+DLI Sbjct: 770 FNDIKQTSCQMAYIFKNLARSIYTIEKIFNAKLSDDVKVELLEKLKSFSHLSKSLYQDLI 829 Query: 817 GIDQIKSVLSIVHRTGRNIDDNPITQEDIQKAYNIARPKILKLTNYYTEMTKSYFENIKR 876 ++ +K++L I+ R GR IDD I ++I+K+Y I +PKI+ +TNYYTEM+++YF IK+ Sbjct: 830 SVETLKAILYIIKRNGRTIDDVEIGSDEIRKSYEIIKPKIINMTNYYTEMSRAYFNFIKK 889 Query: 877 IMNPEDANAVVFDNE 891 +N +D N + FD E Sbjct: 890 NLNMDDKNLITFDIE 904 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,256 Number of Sequences: 156 Number of extensions: 5517 Number of successful extensions: 38 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 1 length of query: 891 length of database: 48,119 effective HSP length: 70 effective length of query: 821 effective length of database: 37,199 effective search space: 30540379 effective search space used: 30540379 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 96 (41.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634845|ref|NP_039138.1| ORF FPV175 [Fowlpox virus] (274 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150541|ref|NP_150536.1| LSDV102 hypothetical protein [lumpy... 200 3e-054 >gi|15150541|ref|NP_150536.1| LSDV102 hypothetical protein [lumpy skin disease virus] Length = 317 Score = 200 bits (509), Expect = 3e-054 Identities = 122/319 (38%), Positives = 186/319 (58%), Gaps = 49/319 (15%) Query: 1 MTGLMVTDITNIAKEYNLTAFSEDVYPCNKNYELTNGQLSALKTIN--VVLTTRSDNYEK 58 MT + VTDI N +Y++TAFSED YP NKNYE+T GQLS L+T+N ++ T+S ++ + Sbjct: 1 MTTIPVTDIPN---DYSVTAFSEDGYPSNKNYEITTGQLSILRTVNDKLLAKTKSPSFTE 57 Query: 59 DVTYNDDD-------------DH---------DRCIVSEIGSHHSFNDEKDNY------- 89 N D +H D + SEI ++ N Sbjct: 58 LEIANSPDFFIPGEDSPITIIEHVESPQTKFIDNSLKSEIVLAEKQRQQRVNIRVSGLET 117 Query: 90 -IQSNNIQQ----------TPSLSAVFDDNKRVHLLEQEIAELRKKKTK----SKNLLDF 134 I+ I++ TPSL +FD +KR+ LLE EI EL+ +++K + NL +F Sbjct: 118 VIEKEPIEEHMRITSIPSKTPSLGVMFDKDKRIKLLEDEIYELKTQQSKLLNTNNNLDNF 177 Query: 135 TNTLFNKNPLRIGILNKRAIILNYASMNNSPLTMXXXXXXXXXXXXNMYISIKQYHEVHK 194 T LF KN + +NKR I+NYAS+ S LT+ +Y +KQ+++ +K Sbjct: 178 TKLLFGKNIHQSSEINKRIAIVNYASLTKSELTLEDLEICSEEEIDKIYKVVKQHNDSYK 237 Query: 195 KKLIVTNIISILISVIEQLLVRIGFDEIKGLSKEVTSTIIDLEIGEDCEQLATKMGVANN 254 K++IVT+ I+I+I ++EQ+LV++GF+E+KG+S E+TS IIDL IGEDCE +A K+G+ N+ Sbjct: 238 KRIIVTHFITIIIIILEQILVKLGFEEMKGVSNELTSEIIDLNIGEDCEAIAVKIGIVNS 297 Query: 255 PVINISLFILKIFIRRINI 273 P+INI +F++K + RI + Sbjct: 298 PIINIVIFLIKKLMTRIKL 316 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.317 0.135 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,981 Number of Sequences: 156 Number of extensions: 1959 Number of successful extensions: 12 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 2 length of query: 274 length of database: 48,119 effective HSP length: 61 effective length of query: 213 effective length of database: 38,603 effective search space: 8222439 effective search space used: 8222439 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634846|ref|NP_039139.1| ORF FPV176 Virion protein [Fowlpox virus] (171 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150542|ref|NP_150537.1| LSDV103 putative virion core protei... 78 2e-017 >gi|15150542|ref|NP_150537.1| LSDV103 putative virion core protein [lumpy skin disease virus] Length = 190 Score = 77.8 bits (190), Expect = 2e-017 Identities = 58/190 (30%), Positives = 88/190 (45%), Gaps = 39/190 (20%) Query: 11 SSFNEYVEAMHKLNPQLKSLLNHINAITANTPPNFSEGXXXXXXXXXXXXXXXKDVTAGA 70 SS+++Y+E ++KL PQL+++L HI+ A+ N + +V AG Sbjct: 9 SSYDDYIETINKLTPQLRTILAHISGEQASQKSNLTP------EDNTTNNTDENEVKAGN 62 Query: 71 PRKSSRCTGTTSTRKPCSRRRGGAMASN----------------------EQEVQAVTNS 108 + + T K CS ++ + +SN +Q +QAVTN Sbjct: 63 VKTKACMTKPNKKSKSCSNKQTTSRSSNVCSSKSVNNGAVFKKRNTFNETDQIMQAVTNG 122 Query: 109 GKIVYGVITGDGQLEVKGHVGEVNEDLLGIDLDIVNGGXXXXXXXXXXXXXMSN------ 162 GKIVYG + +G+LEV+G VGE+N+DLLGI + VN G + Sbjct: 123 GKIVYGTMK-EGKLEVQGMVGEINQDLLGI--ESVNAGRRNKNISQSKKKLIKRGMYKVE 179 Query: 163 --DNSIDGGM 170 D+SID GM Sbjct: 180 TADDSIDDGM 189 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.310 0.129 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,473 Number of Sequences: 156 Number of extensions: 408 Number of successful extensions: 4 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 1 length of query: 171 length of database: 48,119 effective HSP length: 56 effective length of query: 115 effective length of database: 39,383 effective search space: 4529045 effective search space used: 4529045 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634847|ref|NP_039140.1| ORF FPV177 hypothetical protein [Fowlpox virus] (68 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.326 0.146 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8066 Number of Sequences: 156 Number of extensions: 338 Number of successful extensions: 9 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 0 length of query: 68 length of database: 48,119 effective HSP length: 44 effective length of query: 24 effective length of database: 41,255 effective search space: 990120 effective search space used: 990120 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634848|ref|NP_039141.1| ORF FPV178 Virion protein [Fowlpox virus] (71 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.326 0.141 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7591 Number of Sequences: 156 Number of extensions: 288 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 71 length of database: 48,119 effective HSP length: 47 effective length of query: 24 effective length of database: 40,787 effective search space: 978888 effective search space used: 978888 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634849|ref|NP_039142.1| ORF FPV179 Virion envelope protein [Fowlpox virus] (91 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.143 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6815 Number of Sequences: 156 Number of extensions: 140 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 91 length of database: 48,119 effective HSP length: 49 effective length of query: 42 effective length of database: 40,475 effective search space: 1699950 effective search space used: 1699950 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 85 (37.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634850|ref|NP_039143.1| ORF FPV180 [Fowlpox virus] (97 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.326 0.143 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,010 Number of Sequences: 156 Number of extensions: 969 Number of successful extensions: 11 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 97 length of database: 48,119 effective HSP length: 50 effective length of query: 47 effective length of database: 40,319 effective search space: 1894993 effective search space used: 1894993 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634851|ref|NP_039144.1| ORF FPV181 Putative myristylated membrane protein [Fowlpox virus] (369 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150547|ref|NP_150542.1| LSDV108 putative myristylated membr... 304 3e-085 >gi|15150547|ref|NP_150542.1| LSDV108 putative myristylated membrane protein [lumpy skin disease virus] Length = 377 Score = 304 bits (778), Expect = 3e-085 Identities = 151/377 (40%), Positives = 220/377 (58%), Gaps = 18/377 (4%) Query: 5 VSNITVIATPQAPETKYLRVEYTGGYDDEYIRFFEAENIHSGDIGSEISPPFCLTRDTTV 64 V+N+ V KY+ + + ++ I F E + I++ D SEI P FCLT + + Sbjct: 7 VTNLNVSKDLADYNKKYMFINFNYPEYNKIITFLEEQKIYNDDKKSEILPNFCLTDNLKI 66 Query: 65 KQCASFLSPEAKKKFVIVPGEPCKSLSFRPGSIL----DL------QKIPYGTESYVLDG 114 C +F+S E KK+++V G+ C+S SFRPGS++ D+ KIP + Y+L G Sbjct: 67 SHCGNFVSDEISKKYILVKGDSCRSFSFRPGSMILYTNDITEDYLDNKIPESAKEYILKG 126 Query: 115 TRCRFINIDYLYTDPDIKRCCNKESDKDCPEIFSNNYETDHCDTIMSSICLQTPGSLPCR 174 T+C+FI DY D DI +CC S +CP+ +N Y+T HCD MS C P ++ C Sbjct: 127 TQCKFIKKDYFINDDDIIKCCTNPSIGNCPKKLNNEYQTSHCDNSMSFFCKSNPDNVQCL 186 Query: 175 EWLEKKREVAFDTYMKVCSDHLDANYCSDFVDYTRPDNFGYSDAAILSYCSKHRNNPNCW 234 +WL KR++A TY +CS+++D YCS+F+ RP+ F + D A+LSYC+K++ N NCW Sbjct: 187 KWLRTKRKIALSTYTDICSNNMDKRYCSEFIRVVRPNFFTFGDIALLSYCNKNKGNRNCW 246 Query: 235 CVTTPKNDKLFSLELALGPKVCWLHECTDKSKDRKYLLFDQDVQRTNCKYIGCNINVDTL 294 CV+ P N + + LGP+VC LHECTDK++DRK+LL+DQD+QR+ CKYIGCNIN+++L Sbjct: 247 CVSPPNN---ITFDRYLGPRVCLLHECTDKTRDRKWLLYDQDIQRSRCKYIGCNININSL 303 Query: 295 RLRNSVAELIAKC--GGSIAEDTVLGDDSYNKEAKLPSFFSXXXXXXXXXXXXXXXXXXR 352 L NS +LI+ C +I D G K+ LP+ Sbjct: 304 TLENSKIDLISDCSKNKNIIGDLDPGIPKAKKKRDLPNIIGFPFIFICLAVLFYFLV--- 360 Query: 353 IYDAKVINSNTINVYRK 369 IY+ K I +N INV R+ Sbjct: 361 IYNRKKIKTNNINVRRR 377 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.137 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,548 Number of Sequences: 156 Number of extensions: 2298 Number of successful extensions: 12 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 1 length of query: 369 length of database: 48,119 effective HSP length: 63 effective length of query: 306 effective length of database: 38,291 effective search space: 11717046 effective search space used: 11717046 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634852|ref|NP_039145.1| ORF FPV182 Phosphorylated virion membrane protein [Fowlpox virus] (198 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150548|ref|NP_150543.1| LSDV109 putative phosphorylated IMV... 102 8e-025 >gi|15150548|ref|NP_150543.1| LSDV109 putative phosphorylated IMV membrane protein [lumpy skin disease virus] Length = 196 Score = 102 bits (254), Expect = 8e-025 Identities = 56/167 (33%), Positives = 97/167 (57%), Gaps = 8/167 (4%) Query: 4 NYLNYYNVFEEFDAGAGIKEKELFTEEQQLSFLPKKGLGNGGFDGVERLYS------NII 57 +YL+YYN+F +F AGAG+ + ELFT E++ +FLPK+ G + + +S NI+ Sbjct: 2 SYLSYYNMFSDFTAGAGVSDNELFTREEEEAFLPKEHHEEGEEYKISKHHSLKNRFPNIL 61 Query: 58 NNNDIKSLLALIMLVFAINTNSLVALIFIILSAIFVPVPALIIAYCIALHLKNG--SDAT 115 +DI++L+ LI+ V AI T ++A+I I +++ +P P+L+IAYC+++ +G + Sbjct: 62 MRSDIRALIGLILFVLAITTTPIIAVIMIAVASALLPFPSLVIAYCLSIQKFSGGVGNNK 121 Query: 116 HVGISILLMLASAVTIYLTSTSKISKGFKRAIDVVLLVILGFYIVKI 162 + +SIL + S +T+ S + I +L + F I KI Sbjct: 122 QIIMSILCVSVSIITLIFRHISSTAYTISYIILAILFCVYAFNISKI 168 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.141 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,545 Number of Sequences: 156 Number of extensions: 1108 Number of successful extensions: 4 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 1 length of query: 198 length of database: 48,119 effective HSP length: 58 effective length of query: 140 effective length of database: 39,071 effective search space: 5469940 effective search space used: 5469940 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634853|ref|NP_039146.1| ORF FPV183 DNA helicase, transcriptional elongation [Fowlpox virus] (462 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150549|ref|NP_150544.1| LSDV110 putative DNA helicase trans... 446 e-128 >gi|15150549|ref|NP_150544.1| LSDV110 putative DNA helicase transcriptional elongation factor [lumpy skin disease virus] Length = 480 Score = 446 bits (1146), Expect = e-128 Identities = 212/459 (46%), Positives = 322/459 (69%), Gaps = 4/459 (0%) Query: 1 MSYITVIDDKLYSSLRKLVGYSPLYLFNDKGDFVEVMKNSEFRFLIPSGYFSNSNVPLYG 60 MS ID KLYS +++++ L+LFNDK +FVEV S F+F++P G FS+ + PL Sbjct: 1 MSMYYEIDYKLYSQIKRIIDDQQLFLFNDKKEFVEVEPKSMFKFILPIGLFSSESFPLPS 60 Query: 61 LTFSYGRNWMKDRQKIILPELYPIQRRVIEEIILQFSRKCKEKRPLYTTLHLACGFGKTV 120 F+ +N++ + I LP LYP+Q++V+ +++ K + RP+Y TLHL+CGFGKT+ Sbjct: 61 KIFAEKKNYIINLDAITLPNLYPLQKKVVFKVLSLMREKRLQGRPMYITLHLSCGFGKTI 120 Query: 121 TASYLIGTHKKNAVVSVPNKLILKQWENSISSLKVSYYVSYEGVSKLLKVLTSKSFSILV 180 TA YL+ HK+ V+ +PNK++ QW+ I S K+SY +S +GV KL+ L ++ +L+ Sbjct: 121 TACYLMLKHKRKTVICLPNKMLASQWKTVIESTKLSYIISLDGVKKLMDKLKFENVDVLI 180 Query: 181 VVDKHFSNKEFCELVYENYDVFILDEAHIYNLMNESIMTSFLCYYPPRICYFLTATPRQQ 240 ++++H SN++FC+ +Y +YD FILDE+H+YNLMN SI+T FL +YPP+ICYFLTATPR+ Sbjct: 181 IINRHLSNEDFCKKIYSDYDTFILDESHMYNLMNNSILTRFLTFYPPKICYFLTATPRKY 240 Query: 241 NAVYCNSIINFIKFSPLQKILYVIRELYNEYTNPSIRAHVSQLQTTANKYHLYTEKALAE 300 N +YCN I+N +K + + K + V+ + Y++ SIR + + + +KYH+YTEK L+E Sbjct: 241 NRLYCNEIVNILKITDMVKTIKVVEYFFENYSSVSIRKMLKR-KLDNDKYHIYTEKILSE 299 Query: 301 DIHRNKTIVDKIIETFKTNQGNRILVITKLRNHMIIIYNDLRKVLSDK-VYLGDAQKKST 359 D RN+ I+ I E FK + R +V+TKLR+HM+++Y++L K+L ++ V+LGDA+ KS+ Sbjct: 300 DSPRNELILKTIFENFKNDIIKRTIVVTKLRSHMMLLYSELNKILGNELVFLGDAKNKSS 359 Query: 360 TDMIKELRTIDNFILVSTLHYAGTGLDIPNLDSLFICNTVMNSMQSEQVMGRICRDTGSS 419 D++K +R + FI VST++Y+GTGLDIP LDSL +CN V+N++Q EQ+ GRICR++ Sbjct: 360 YDVVKRIREKEKFIFVSTINYSGTGLDIPTLDSLILCNVVLNTIQVEQLFGRICRES-DH 418 Query: 420 PTRSIYLFINTSIKEIKSLVGVFTQRFAQ-QATKLGFRE 457 R ++LF TSIKEI+ LVG FTQ+ KLGF + Sbjct: 419 QKRIVFLFPTTSIKEIRHLVGFFTQKIISFSMEKLGFEK 457 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,938 Number of Sequences: 156 Number of extensions: 2969 Number of successful extensions: 14 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 1 length of query: 462 length of database: 48,119 effective HSP length: 65 effective length of query: 397 effective length of database: 37,979 effective search space: 15077663 effective search space used: 15077663 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634854|ref|NP_039147.1| ORF FPV184 [Fowlpox virus] (88 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150550|ref|NP_150545.1| LSDV111 hypothetical protein [lumpy... 51 8e-010 >gi|15150550|ref|NP_150545.1| LSDV111 hypothetical protein [lumpy skin disease virus] Length = 74 Score = 50.8 bits (120), Expect = 8e-010 Identities = 24/56 (42%), Positives = 34/56 (59%), Gaps = 3/56 (5%) Query: 24 EPPTVIPEDECTTCSICQSKLVMFSGVSKYKLSDYLNTGKVFTNSNIRCKACGSSL 79 +P T + ++EC TCS C SKLV S ++K L++Y GK + + C ACGS L Sbjct: 14 KPKTTVQDEECMTCSSCYSKLVKVSDITKVSLNEYKVGGK---GNILTCSACGSEL 66 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.131 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8109 Number of Sequences: 156 Number of extensions: 340 Number of successful extensions: 3 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 2 length of query: 88 length of database: 48,119 effective HSP length: 49 effective length of query: 39 effective length of database: 40,475 effective search space: 1578525 effective search space used: 1578525 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 85 (37.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634856|ref|NP_039148.1| ORF FPV186 [Fowlpox virus] (113 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150551|ref|NP_150546.1| LSDV113 hypothetical protein [lumpy... 91 8e-022 >gi|15150551|ref|NP_150546.1| LSDV113 hypothetical protein [lumpy skin disease virus] Length = 115 Score = 91.3 bits (225), Expect = 8e-022 Identities = 45/113 (39%), Positives = 69/113 (60%), Gaps = 2/113 (1%) Query: 1 MFVLFLIVCYFILIFNIIVPKIADKLRLEHEAFTKYRQIYGNKFRCIGDNLINYSFTPFG 60 M LFLI+CYFILIFNII+P +++KL+ E++A+TKY+ I F C+ +NL Y F G Sbjct: 1 MISLFLILCYFILIFNIIIPTVSEKLKREYDAYTKYKNI-KKDFICVDNNLFYYDFNISG 59 Query: 61 VKANYLVNKNTKMPAICNDIKNINSLIAVTCD-DASKFIKHRNICERAYTELF 112 + A L++ N + P C++IK N ++C+ + + + C AY LF Sbjct: 60 LSAKMLLDNNKQKPLRCSEIKKANKNNYLSCENNDNDIVNFSRSCSNAYLNLF 112 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.332 0.146 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,552 Number of Sequences: 156 Number of extensions: 944 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 113 length of database: 48,119 effective HSP length: 52 effective length of query: 61 effective length of database: 40,007 effective search space: 2440427 effective search space used: 2440427 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634855|ref|NP_039149.1| ORF FPV185 Processivity factor [Fowlpox virus] (433 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150552|ref|NP_150547.1| LSDV112 putative DNA polymerase pro... 153 8e-040 >gi|15150552|ref|NP_150547.1| LSDV112 putative DNA polymerase processivity factor [lumpy skin disease virus] Length = 430 Score = 153 bits (387), Expect = 8e-040 Identities = 112/423 (26%), Positives = 210/423 (49%), Gaps = 29/423 (6%) Query: 20 IHLLGKNNTVRYNELLDWTTKSYWSVGSIH-IEEHVCVDEYYQSIKNNSYLLQ-GRYYFL 77 I++ + +YN +++W + +W + + I+ + +YY + KN S++L+ G+Y FL Sbjct: 20 INIADQKTREKYNSIVEWASNKFWKINTHKVIDAETSISDYYNTSKNESFILKNGKYVFL 79 Query: 78 HKYFGTKYVYLHESFYELSGGTTEATIEKSLKDKIKLVTNKYPDIRFILFVEYKNTFAIE 137 FG ++Y + EL G + I+ +K KI + + DI F+ FV +K + +E Sbjct: 80 PMCFGNIFIYFKGTMMELGSGNIQY-IDIKIKKKIDKLLKENLDIEFLRFVYFKGEWILE 138 Query: 138 DIVSKDNYKLYDILKFSKSVGLKVNGCLSLQIDKKTQFTKEYYELIHTNIEKIKGFYI-- 195 D SK + + LK + + GL + L K+ FT++ YE NI+ FYI Sbjct: 139 DCFSKCKCPI-NFLKTASTNGLNTVPYILLNT-KEIIFTEDDYE----NIDSYFTFYIKE 192 Query: 196 ----NGLICIREDTLVREVSDAKSNEFCCVQSIKLEKIDDNLWLPYAITFNNQVLKISGF 251 + L I E R + D + V+SIK+E I +N ++P +T + V+ + Sbjct: 193 PFKISSLCYIEEGNNERNIIDFYKKTYVFVESIKIENIHNNYYIPKIVTKSKNVVLVRDI 252 Query: 252 KSLVRARLYVGSFVSVIKYRNILLLPDSTVPDKQIPKNEYIRKILEYFNNEYFSIGNYMV 311 L+ +++ + SF+SV K + L+L ++++ + P + R I++Y NE++ G Y+ Sbjct: 253 NHLIDSKIKINSFISVKKKKYFLILDNNSIFSLETPSEAFCR-IMKYIGNEFYVNGKYLS 311 Query: 312 K-TGTIEINKIGNSVTGILLPFSNSEELKQKLEDVEFVNKL----KSRSLFDLSCDYFLQ 366 K + IEI + +S G+L S L + + ++ +KL K++S+F+ + Sbjct: 312 KVSNDIEIKHL-SSKLGLL-----SSTLSELITEISLCDKLREKIKNQSVFEFVMECLEY 365 Query: 367 DREKVIKLINEMDFKLDDNNKIVEFDLNSESVIKGDRILEDIYMKFHQFVIVFNSLSTAK 426 + + L+N M F + N ++ F L + + + I IY F++F+ +FN K Sbjct: 366 PKADFLTLVNNMSFDV-KNGIVLNFKLENINCLDNPNI-SAIYGNFNKFISLFNIFIDVK 423 Query: 427 SML 429 L Sbjct: 424 QSL 426 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.139 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,184 Number of Sequences: 156 Number of extensions: 3614 Number of successful extensions: 23 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 1 length of query: 433 length of database: 48,119 effective HSP length: 64 effective length of query: 369 effective length of database: 38,135 effective search space: 14071815 effective search space used: 14071815 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634857|ref|NP_039150.1| ORF FPV187 [Fowlpox virus] (156 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150553|ref|NP_150548.1| LSDV114 hypothetical protein [lumpy... 122 5e-031 >gi|15150553|ref|NP_150548.1| LSDV114 hypothetical protein [lumpy skin disease virus] Length = 168 Score = 122 bits (306), Expect = 5e-031 Identities = 63/143 (44%), Positives = 93/143 (64%), Gaps = 4/143 (2%) Query: 2 IICSVDIGIKNPAYAIFNYDNTSNTIKLIAIEKSDWTKNWERSVARDLTRYNPDVVILEK 61 +IC+ DIG KNPA + + SN IK+I I K DW+ WE VA+DL ++N + V+LE+ Sbjct: 14 VICAFDIGAKNPARTVLEIE--SNNIKIIDISKLDWSCKWEEQVAKDLFQHNYNYVLLER 71 Query: 62 QGFKSPNSKIIYFIKGFFYNSNTKVIVRNPTFKGGSYRNRKKQSIDVFIQKISEYTDYKN 121 Q +SP K I+FIKG YNS+TKVI +P G SY++RKK+S + F+ + + + Sbjct: 72 QSKRSPYIKFIHFIKGLLYNSDTKVISVSPVMVGYSYKDRKKKSTESFLNWMKVFGLVNS 131 Query: 122 DILNKYTKLDDIADSFNLGLSYM 144 + K K+DD+ADSFN+ L ++ Sbjct: 132 --IPKGKKIDDVADSFNIALRFV 152 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,190 Number of Sequences: 156 Number of extensions: 1288 Number of successful extensions: 14 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 1 length of query: 156 length of database: 48,119 effective HSP length: 55 effective length of query: 101 effective length of database: 39,539 effective search space: 3993439 effective search space used: 3993439 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634858|ref|NP_039151.1| ORF FPV188 Intermediate transcription factor, VITF-3 [Fowlpox virus] (383 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150554|ref|NP_150549.1| LSDV115 putative intermediate trans... 369 e-105 >gi|15150554|ref|NP_150549.1| LSDV115 putative intermediate transcription factor subunit [lumpy skin disease virus] Length = 385 Score = 369 bits (948), Expect = e-105 Identities = 195/386 (50%), Positives = 263/386 (67%), Gaps = 5/386 (1%) Query: 1 MYELFSYLHEIEDEYIRTIFNFHIKKCDEISNIYNIIMTKIKDAKNFNDV-IDERFNKTI 59 M ELF++LH+IE+EY RTIFNFH+ + IY+I+ KI FN++ + + I Sbjct: 1 MDELFTFLHKIENEYSRTIFNFHLISYKDKYKIYDIMKEKISIENIFNNIALTDEIKNHI 60 Query: 60 KKLIYCDIKTTKHIINQSCYPTXXXXXXXXXXXXX-YFDINIISDTPASKRTKEIFLSDR 118 KKL+YCDI TKHIIN + YP +FDIN D S RT EIF +D+ Sbjct: 61 KKLVYCDIHLTKHIINNTVYPKYDNLNQNNNLKFSQFFDINK-DDDYISLRTAEIFDNDK 119 Query: 119 SSLVSYIKTSNKKCKIDYGELKKTI--NSHNRSIYYSGRRSDEYMSTEVHKDQKNPWIKS 176 SSL+SYIKT+NKK K+DYGE+KKT+ N+ N S Y+SG++SD+Y+ T ++ + PWIK+ Sbjct: 120 SSLISYIKTTNKKKKVDYGEIKKTVHGNTKNYSNYFSGKKSDDYLVTTINTKESQPWIKT 179 Query: 177 ISKKLTLDIENQSITTRGKSSILQTIEIIYVNRTCIKIFKDSTIHVILSKDKSETNCVDT 236 ISK++ +DI+ +I T+GKSSILQTIEI++VNRTCIKIFKDST+H+ILSK+K E CV Sbjct: 180 ISKRMRIDIKKNAIITKGKSSILQTIEIVFVNRTCIKIFKDSTMHIILSKEKDEIGCVGI 239 Query: 237 INKLFDTYSILFDLITDITGNEKFLEYKAVASDIVSTDNFNEKILIIKKHPNMYGIHNFK 296 INK+F Y ILF L+ DI+ NE F + I++ F++KI IK N YG NFK Sbjct: 240 INKIFQVYKILFCLLYDISKNENFKNAFDNSVSILNLTKFDDKIAKIKTVKNEYGFENFK 299 Query: 297 IGMFNITYKLSIDMIIFPSLMEFNSKIKFFKGKKLNIVALSSLQDCIKYVKEAKGILCMM 356 IGMFN+TY I +FPSL+++ +KIKFFKGKKLNIVAL SL +CI+YV A IL M Sbjct: 300 IGMFNLTYNKPILHTVFPSLLDYENKIKFFKGKKLNIVALRSLDECIQYVSLANKILKKM 359 Query: 357 KKKSEELEEIDIITASVDRLKNVIIN 382 +S+ L ++I + S++ LK ++ N Sbjct: 360 ADRSDILNNLNIESESIEILKKILFN 385 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.137 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,619 Number of Sequences: 156 Number of extensions: 3182 Number of successful extensions: 29 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 1 length of query: 383 length of database: 48,119 effective HSP length: 63 effective length of query: 320 effective length of database: 38,291 effective search space: 12253120 effective search space used: 12253120 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634859|ref|NP_039152.1| ORF FPV189 RNA polymerase subunit, RPO132 [Fowlpox virus] (1161 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150555|ref|NP_150550.1| LSDV116 RNA polymerase subunit [lum... 1843 0.0 >gi|15150555|ref|NP_150550.1| LSDV116 RNA polymerase subunit [lumpy skin disease virus] Length = 1156 Score = 1843 bits (4774), Expect = 0.0 Identities = 873/1156 (75%), Positives = 1029/1156 (88%), Gaps = 1/1156 (0%) Query: 1 MDQKLGNKFLEPDPKQNVFYRPLHFQYVSYENFISYRLKEILSVNRTLLSFKNDTEKIVL 60 MDQ+LG KFL PDPK VFYRPLHFQY SY NFI+YRL+EILSV RTLLSFKNDTEKI++ Sbjct: 1 MDQRLGYKFLSPDPKIGVFYRPLHFQYKSYSNFINYRLQEILSVKRTLLSFKNDTEKIII 60 Query: 61 RINNIKIIPPDYSPIIASIKGKSYDALVTFTVDIRKEVMTKDGLHVSTISSYEGNDSQLI 120 I+NIK+ PP+YSPIIASIKGKSYDALVTFTV I KEVMTKDG ++ ISSYEGNDS LI Sbjct: 61 EIDNIKVTPPEYSPIIASIKGKSYDALVTFTVHIYKEVMTKDGTTITKISSYEGNDSHLI 120 Query: 121 KIPLLIGYGNKNPLDNSKFVSPNIIGGVFINKQSIEKVGINIVEKTTTWPKFKIVKPNAY 180 KIPLLIGYGNKNPLD +K+V PN+IGGVFINKQS+EKVGIN+VEK TTWPKF+++KPNA+ Sbjct: 121 KIPLLIGYGNKNPLDTAKYVVPNVIGGVFINKQSVEKVGINLVEKLTTWPKFRVIKPNAF 180 Query: 181 TFSFSSISPVNILPTKYRHYKITMDLSQLENCYISSAKTFITVNVIVLIKFLINQDLNYI 240 TFSFSS+SP +ILPTKYRHYKI MDLSQL+NCYISS KTFITVN+I+L+++L L++I Sbjct: 181 TFSFSSVSPAHILPTKYRHYKILMDLSQLDNCYISSTKTFITVNIILLVQYLSRVSLSFI 240 Query: 241 KNNLTYGMPLETIYLINAIIESSKTILEA-EDFNINDYIESLIESEFQKQRSITSIDDFR 299 K++L+Y MP E YL+N IIES+K +++ DF+I+ YI LI SE+ KQ+S +++F+ Sbjct: 241 KHSLSYDMPSEISYLVNTIIESTKELIKTINDFDIDTYINDLIISEYNKQKSQLILEEFK 300 Query: 300 YDLMYNFLPHMVNSSDQLKGFYLLGLLRKFIYCIYHTSRYPDRDSMVCHRVLTYGRYFEI 359 ++++ NFLPHM ++ +QLKGFY++ LLRKFIYCIY+TSRYPDRDSMVCHRVLTYG+YFEI Sbjct: 301 HEMINNFLPHMNDTPNQLKGFYIMSLLRKFIYCIYYTSRYPDRDSMVCHRVLTYGKYFEI 360 Query: 360 LANDELENYITNIKNDITNSHKNKGVCNVSIHVLTTPGFNHAFSGLLSGKFKKTDGSYRT 419 LA+DELENYI NI+ DI N+HKN+G +V+IHVLTTPGFNHAFSGLLSGKFKKTDGSYRT Sbjct: 361 LAHDELENYIGNIRTDIINNHKNRGTYSVNIHVLTTPGFNHAFSGLLSGKFKKTDGSYRT 420 Query: 420 HPHYSWMQNISIPRSVGYYPDQVKISKMFSVRKYHPSQYAFFCPSDVPERGPQVGLISQL 479 H HYSWMQNISIPRSVGYYPDQVKISKMFSVRKYHPSQYA+FCPSDVPERGPQVGL+SQL Sbjct: 421 HSHYSWMQNISIPRSVGYYPDQVKISKMFSVRKYHPSQYAYFCPSDVPERGPQVGLVSQL 480 Query: 480 SVLTSVSNIRTTEYIDLKNAIMKYIYTYDKNDISYFQTGHIITIENDLVAAINPELVDKF 539 SVLTS++NI T EY++L+ I YI +Y+ NDISYF+TG+ IT+EN L+A +NP LVD F Sbjct: 481 SVLTSITNICTNEYLELEKKICNYIRSYNHNDISYFETGYYITLENSLIACLNPNLVDDF 540 Query: 540 VDDFKFRKRVNYFDNLEIGISNVKDHMNEIRINIGSGRLIRPFLVVYKGELVMDTIGEEL 599 V DF+ +KR+NYF NLEIGI+ V DHMNEIRINIG GRLIRPFLV+ G L+MD I EL Sbjct: 541 VIDFRRKKRMNYFGNLEIGITLVNDHMNEIRINIGGGRLIRPFLVIDNGNLIMDEIFSEL 600 Query: 600 EKRIDTITFSDIQKEYPHVIEMLDLEQFVFSNVCESVSKFRELSDEDKKLYDYCDFPNEF 659 E +ID +TFSDIQKE+PHVIE++D+EQF FSNVCESV KFR L +K Y CDFP EF Sbjct: 601 EFKIDDMTFSDIQKEFPHVIEIVDIEQFTFSNVCESVQKFRALPKSEKCKYHLCDFPAEF 660 Query: 660 RDGYVASTLVGINHNSGPRAILGCAQAKQAISCLSSDLRNKIDNGIHLLYPERPIVLSKA 719 +DGYVAS+LVGINHNSGPRAILGCAQAKQAISCLSSD+RNKIDNGIHL+YPERPIV+SKA Sbjct: 661 KDGYVASSLVGINHNSGPRAILGCAQAKQAISCLSSDIRNKIDNGIHLIYPERPIVISKA 720 Query: 720 TETSKIAINCFGQHVLVALMSYKGMNQEDGIVVKREFIERGGLDIVTAKKHQVEIPIENF 779 ETSKIA+NCFGQHV +ALMSYKG+NQEDGI++K++F+ERGGLDI+TAKKHQVEIP+ENF Sbjct: 721 LETSKIAVNCFGQHVTIALMSYKGINQEDGIIIKKQFVERGGLDIITAKKHQVEIPLENF 780 Query: 780 KNRERINSTAYSKLDINGLVRLNAFLEPGDAIAKNISSRTLDDDFVADNQISFDISEKYT 839 N+ER+ STAYSKL+ NGLVRLNAFLE GDAIA+NISSRTL+DDFV DNQISFDIS++YT Sbjct: 781 NNKERVKSTAYSKLESNGLVRLNAFLESGDAIARNISSRTLEDDFVQDNQISFDISDRYT 840 Query: 840 DMYMSRVERVQVDLTDKVKVRVLTMKERRPIMGDKFTSRTSQKGTIAYIASESELPYDKN 899 DMY SRVERVQVDLTDKVKVRVLTMKERRP++GDKFTSRTSQKGT+AYIA E+ELPYD+N Sbjct: 841 DMYQSRVERVQVDLTDKVKVRVLTMKERRPVLGDKFTSRTSQKGTVAYIADETELPYDEN 900 Query: 900 GVTPDIIINSTSIYSRKTISMLIEMILTSAYSVKPYNNNGKNRPICFPSSNETDIEYYIE 959 G+ PD+IINSTSI+SRKT+SMLIE+ILTSAY+ KPYNN+G+NRPICFPSSNET I+ Y++ Sbjct: 901 GIKPDVIINSTSIFSRKTVSMLIEVILTSAYASKPYNNDGQNRPICFPSSNETSIDTYLD 960 Query: 960 FARKCYQSAIPDLDKDELENEVYCESILYDPETDKPYKTKVFMGPLYYLRLRHLTQDKAT 1019 FA++C++ P L D++ ++++C++ILYDPETDKPY +K+FMGP+YYLRLRHLTQDKAT Sbjct: 961 FAKRCHRDRYPSLSDDDINDKMFCDTILYDPETDKPYSSKIFMGPIYYLRLRHLTQDKAT 1020 Query: 1020 VRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIAHGAANTITEILKDSEEDYQDVYVC 1079 VRCRGKKTKLIRQANEGR+RGGGIKFGEMERDCLIAHGAANTITE+LKDSEEDYQDVYVC Sbjct: 1021 VRCRGKKTKLIRQANEGRRRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQDVYVC 1080 Query: 1080 ENCGDIATKKNNNVYCIRCTKLNLYTVLTKIDTTHVSKVFLTQMNARGIKINLTFNEQNP 1139 ENCGDI + N CIRC+K NL T+LTK+DTTHV+KVF+TQMNARG+K+ L F ++NP Sbjct: 1081 ENCGDITAQIQGNKVCIRCSKQNLSTILTKVDTTHVAKVFITQMNARGVKVKLEFEKRNP 1140 Query: 1140 LFYKPMKQIDLSPTIL 1155 LFYKP+ +DLSP L Sbjct: 1141 LFYKPLDVVDLSPNFL 1156 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 145,857 Number of Sequences: 156 Number of extensions: 8331 Number of successful extensions: 40 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 1 length of query: 1161 length of database: 48,119 effective HSP length: 72 effective length of query: 1089 effective length of database: 36,887 effective search space: 40169943 effective search space used: 40169943 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 97 (42.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634860|ref|NP_039153.1| ORF FPV190 A type inclusion protein [Fowlpox virus] (620 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.139 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,266 Number of Sequences: 156 Number of extensions: 4184 Number of successful extensions: 19 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 620 length of database: 48,119 effective HSP length: 67 effective length of query: 553 effective length of database: 37,667 effective search space: 20829851 effective search space used: 20829851 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634861|ref|NP_039154.1| ORF FPV191 A type inclusion protein [Fowlpox virus] (474 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150556|ref|NP_150551.1| LSDV117 putative fusion protein [lu... 42 4e-006 >gi|15150556|ref|NP_150551.1| LSDV117 putative fusion protein [lumpy skin disease virus] Length = 148 Score = 42.0 bits (97), Expect = 4e-006 Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 432 KSCSIVAEAIDRLERHADTLRHSMVNLAKKIDYQTG 467 K C+ + I RLE H +T+R +M+ L KK+D+QTG Sbjct: 108 KECNSLKNIIKRLENHIETIRKNMIVLTKKVDFQTG 143 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,281 Number of Sequences: 156 Number of extensions: 2627 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 1 length of query: 474 length of database: 48,119 effective HSP length: 65 effective length of query: 409 effective length of database: 37,979 effective search space: 15533411 effective search space used: 15533411 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634862|ref|NP_039155.1| ORF FPV192 [Fowlpox virus] (141 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150557|ref|NP_150552.1| LSDV118 hypothetical protein [lumpy... 117 2e-029 >gi|15150557|ref|NP_150552.1| LSDV118 hypothetical protein [lumpy skin disease virus] Length = 140 Score = 117 bits (292), Expect = 2e-029 Identities = 61/140 (43%), Positives = 84/140 (59%), Gaps = 3/140 (2%) Query: 1 MDALFVFIIILATAVICLFLFQAYTIYDNYHNIIEFNEKYGGLEYSRSPGGLYIDKRVFD 60 M+A+ +F IIL+T +C+ +FQ Y+IY NY NI EFN + E+S+S L +D+ + D Sbjct: 1 MNAITIFFIILSTVAVCIIIFQLYSIYLNYDNIKEFNSAHSAFEFSKSVNTLSLDRTIKD 60 Query: 61 PNDSETDPKAKWRCVNYNNNQYASASKFGYLATSSRNPVLFTNLEDCVYYNYTRGEIGTI 120 PND DPK KWRCV +N+ Y S S FG+ + S F NLE C+ Y +++ I Sbjct: 61 PNDDIYDPKQKWRCVKLDND-YVSVSMFGFKSNGSEIR-KFKNLESCIDYTFSQSTHSDI 118 Query: 121 WNPC-AEYGEGSAECSTLKS 139 NPC + G S EC LKS Sbjct: 119 KNPCILQNGIKSKECIFLKS 138 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.138 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,206 Number of Sequences: 156 Number of extensions: 972 Number of successful extensions: 4 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 1 length of query: 141 length of database: 48,119 effective HSP length: 54 effective length of query: 87 effective length of database: 39,695 effective search space: 3453465 effective search space used: 3453465 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634863|ref|NP_039156.1| ORF FPV193 RNA polymerase subunit, RP035 [Fowlpox virus] (302 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150558|ref|NP_150553.1| LSDV119 RNA polymerase subunit [lum... 246 8e-068 >gi|15150558|ref|NP_150553.1| LSDV119 RNA polymerase subunit [lumpy skin disease virus] Length = 302 Score = 246 bits (627), Expect = 8e-068 Identities = 124/300 (41%), Positives = 189/300 (62%), Gaps = 7/300 (2%) Query: 1 MHRQEYRIDVSANPSIATFIKHMCKKHLVIPRLNVGVVMINTTTAINEEWLTSIESLPTH 60 M R+E I + NP +ATFIKH + P L GVV+ N TTA+NEEWLTSIE +PT Sbjct: 1 MFREEKVIVIDLNPDLATFIKHGFNNRVRWPLLTTGVVLSNNTTAVNEEWLTSIEHMPTR 60 Query: 61 KIFYDYVYDIIAMQCNFCIHLKKTQKENDSYISLADIDYYIIKPE--EVIKLDPIKELKE 118 KIFY+Y I+ + FC++LKK+ E I+L D DYYII E + IK+D EL E Sbjct: 61 KIFYNYTSKILRKEVGFCVYLKKST-EKKRIITLGDFDYYIIDLENYKFIKIDKPIELNE 119 Query: 119 TLLHSFSEYRATNTKTIELAAFSSGTKINDELVNRLSFLDTELFNREYKNVKIIHSQNYE 178 TLLH+F +YR N + IE+ AFSS +I ++++ L+F++ E FN+EY N+K ++E Sbjct: 120 TLLHTFQDYRIKNLQVIEIIAFSSNIQITEKIIEGLTFINIETFNKEYDNIKPTLKTSFE 179 Query: 179 TYFPFSIIAPEGNISIFMEKYTWFNSSVYFKSMLSYLKEVISDQIAEFNITKLDME-KDT 237 + PF + AP G ++ ++E Y W + + K +L +L+ +++ + KL+ D Sbjct: 180 SIIPFIVTAPLGRLTFYVEHYPWIDFKSHMKEILDFLE---GSLVSDVHSHKLETSVLDN 236 Query: 238 PTSSAYDPKSNIVFVNDITTMCIINFFGCECQLGTYHKFNISSINTKTFHKAVNKTISEI 297 TSS+Y+P S ++FVND+ TM ++NFFGC +L +YH+F+++ ++ TF KA+ +I Sbjct: 237 STSSSYNPVSGMLFVNDLLTMTVVNFFGCNSRLNSYHRFDMTKLDINTFLKALADAFKKI 296 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,436 Number of Sequences: 156 Number of extensions: 2191 Number of successful extensions: 18 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 1 length of query: 302 length of database: 48,119 effective HSP length: 61 effective length of query: 241 effective length of database: 38,603 effective search space: 9303323 effective search space used: 9303323 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634864|ref|NP_039157.1| ORF FPV194 [Fowlpox virus] (74 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.132 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4434 Number of Sequences: 156 Number of extensions: 115 Number of successful extensions: 3 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 74 length of database: 48,119 effective HSP length: 50 effective length of query: 24 effective length of database: 40,319 effective search space: 967656 effective search space used: 967656 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634865|ref|NP_039158.1| ORF FPV195 [Fowlpox virus] (113 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.145 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,057 Number of Sequences: 156 Number of extensions: 967 Number of successful extensions: 4 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 113 length of database: 48,119 effective HSP length: 52 effective length of query: 61 effective length of database: 40,007 effective search space: 2440427 effective search space used: 2440427 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634866|ref|NP_039159.1| ORF FPV196 hypothetical protein [Fowlpox virus] (120 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.140 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,992 Number of Sequences: 156 Number of extensions: 657 Number of successful extensions: 4 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 0 length of query: 120 length of database: 48,119 effective HSP length: 53 effective length of query: 67 effective length of database: 39,851 effective search space: 2670017 effective search space used: 2670017 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634867|ref|NP_039160.1| ORF FPV197 Virion assembly protein [Fowlpox virus] (301 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150560|ref|NP_150555.1| LSDV121 putative DNA packaging prot... 268 1e-074 >gi|15150560|ref|NP_150555.1| LSDV121 putative DNA packaging protein [lumpy skin disease virus] Length = 254 Score = 268 bits (686), Expect = 1e-074 Identities = 137/253 (54%), Positives = 182/253 (71%), Gaps = 4/253 (1%) Query: 1 MDIVREVKFNRNSLLNDYFRMVILGGSGSGKTTFLLSLFKTFITKYKHIFLFTPILNPSY 60 M+ +E F RNSL+ + FR+ ++GGSGSGKT +LLSLF T + KYKHIFLFTP+ N +Y Sbjct: 2 MNRFKEKHFLRNSLITNPFRIALVGGSGSGKTAYLLSLFSTLVEKYKHIFLFTPVYNSAY 61 Query: 61 NYYVWPDHIYKITTAEELEYSLSKMKQDLVNL--GKRGSINHKFLVILDDLGDMQLKSKI 118 + Y+WPDH+ ++TT EEL+Y+L K+ + K FL+ILDDLGD Q KS Sbjct: 62 DSYIWPDHVNRVTTPEELDYALITTKEKIEKYVETKGNKKADMFLLILDDLGDKQTKSSC 121 Query: 119 LSWLVNTGRHIRMSIVMLCQTYRHVPSNCRSSITHLCCCNVSDADIENITRSMSLVATKQ 178 L +N GRH+ SI++LCQTY+HVP N R+SITH CCCNVSD+DIEN+ RSMS+ +K+ Sbjct: 122 LLDFLNHGRHLNTSIILLCQTYKHVPINGRTSITHFCCCNVSDSDIENMLRSMSITGSKK 181 Query: 179 -IIKALSVMRAASRGK-KVYIIENTVFANKDIRICYDTADKSVIEQKPDTAILLSQFSHM 236 ++K++S+MRA + K +V IIE++VF+N + RICYDTAD+SVI D +ILL QFSHM Sbjct: 182 DLLKSVSLMRAVNVSKRRVLIIEDSVFSNGEQRICYDTADESVIRHIVDPSILLKQFSHM 241 Query: 237 KDQLHTILSDDNK 249 K L ILS K Sbjct: 242 KKNLTKILSSYEK 254 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,529 Number of Sequences: 156 Number of extensions: 1902 Number of successful extensions: 13 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 1 length of query: 301 length of database: 48,119 effective HSP length: 61 effective length of query: 240 effective length of database: 38,603 effective search space: 9264720 effective search space used: 9264720 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634868|ref|NP_039161.1| ORF FPV198 C-type lectin-like protein [Fowlpox virus] (173 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.138 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,271 Number of Sequences: 156 Number of extensions: 938 Number of successful extensions: 3 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 173 length of database: 48,119 effective HSP length: 56 effective length of query: 117 effective length of database: 39,383 effective search space: 4607811 effective search space used: 4607811 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634869|ref|NP_039162.1| ORF FPV199 V-type Ig domain [Fowlpox virus] (219 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,004 Number of Sequences: 156 Number of extensions: 1476 Number of successful extensions: 11 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 0 length of query: 219 length of database: 48,119 effective HSP length: 59 effective length of query: 160 effective length of database: 38,915 effective search space: 6226400 effective search space used: 6226400 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634870|ref|NP_039163.1| ORF FPV200 V-type Ig domain [Fowlpox virus] (265 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,454 Number of Sequences: 156 Number of extensions: 1778 Number of successful extensions: 14 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 265 length of database: 48,119 effective HSP length: 60 effective length of query: 205 effective length of database: 38,759 effective search space: 7945595 effective search space used: 7945595 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634871|ref|NP_039164.1| ORF FPV201 [Fowlpox virus] (283 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150564|ref|NP_150559.1| LSDV125 hypothetical protein [lumpy... 44 4e-007 >gi|15150564|ref|NP_150559.1| LSDV125 hypothetical protein [lumpy skin disease virus] Length = 288 Score = 44.3 bits (103), Expect = 4e-007 Identities = 35/174 (20%), Positives = 77/174 (44%), Gaps = 15/174 (8%) Query: 92 IMNNIECYFVACLEGSCTVNVNLGDRQISDNISESSGFLMDVNTDHVIDTKYVGLFITKI 151 I+ + E F+ CL+G + + S+ + + F +++ T + TK L + I Sbjct: 88 ILESSEYMFIVCLKGETIIKCYNNNVISSNKVQKGEAFTLNIKTRYSTITKNRDLHLAII 147 Query: 152 KVDA--HVFYGQNVIMFPEKNLFSQTNGPNFILYDITVQDRNVL---LLITSKYIYNLCD 206 + Y +N++ + +L++ +G F L+ I+ D VL +++ +Y Y+ Sbjct: 148 TYTTIYPLIYYKNIVFSKDSSLYNIFSGYKFALFRISSDDDKVLEDIIILNGRYYYSNSM 207 Query: 207 DKYYDIFELKYLVDNCKLPMPLIPLSKYDFTFTDLSVIKSENVKTVLSKVHTSM 260 +K +I +K L+D + + +FT + I + K + + S+ Sbjct: 208 EK-VNIINIKTLLDKYNIKIN---------SFTQIDYIPKSSHKACVEALELSL 251 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,491 Number of Sequences: 156 Number of extensions: 2520 Number of successful extensions: 18 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 1 length of query: 283 length of database: 48,119 effective HSP length: 61 effective length of query: 222 effective length of database: 38,603 effective search space: 8569866 effective search space used: 8569866 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634872|ref|NP_039165.1| ORF FPV202 hypothetical protein [Fowlpox virus] (100 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.333 0.144 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,361 Number of Sequences: 156 Number of extensions: 347 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 100 length of database: 48,119 effective HSP length: 50 effective length of query: 50 effective length of database: 40,319 effective search space: 2015950 effective search space used: 2015950 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634873|ref|NP_039166.1| ORF FPV203 Tyrosine protein kinase [Fowlpox virus] (285 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150582|ref|NP_150577.1| LSDV143 tyrosine protein kinase-lik... 87 5e-020 >gi|15150582|ref|NP_150577.1| LSDV143 tyrosine protein kinase-like protein [lumpy skin disease virus] Length = 302 Score = 87.0 bits (214), Expect = 5e-020 Identities = 67/247 (27%), Positives = 131/247 (52%), Gaps = 19/247 (7%) Query: 35 DSYRLYNAKYDNNPVSLKTFT-CPSKNSIRQFIK--ELDLLRSLQSSEHVIKLYGYILDI 91 D ++ ++N V ++TF + + I I E+ LR + S+ +++K+Y + +++ Sbjct: 52 DQNYIHKGIFNNKEVIVRTFKKSHTSHKILMDISNNEIKNLRRIDSN-NILKIYAFYIEM 110 Query: 92 --SVPLCSLVVE---NNYLTLRNFLDMEKDIDYAKKTRIIIDAAKGLNAMHTSYSTPILH 146 +P SL++E YL +N + E+D+ + K + ID + GL ++ Y+ + Sbjct: 111 CDGLPRLSLILEYCKRGYL--KNVIRKERDLTFKTKLDMAIDCSVGLYNVY-KYTNNKPY 167 Query: 147 KNLTSESFYMTNNGVLKIGSGAYYNI-----YKRVNFMAYFDYDMLKDIFSNYTIKSEIY 201 ++S SF + N +KI I +K +N + Y + ML ++F+ T+ ++Y Sbjct: 168 GCISSVSFLVEENYKVKIICHGLEKILANPPFKNINAIVYQSHKMLSNVFNERTMDDDMY 227 Query: 202 RFGIVIWEIITRKIPFENMDYQGIYNMLIKENKGEYMPLDCPLELQCIVIACRNTNSIFR 261 FG+V+WEI + KIPF+N+ + IY+++I +N G+ + P ++ V C + S R Sbjct: 228 SFGVVLWEIFSGKIPFKNLTTKEIYDLIINKN-GQLKLPETPHLIKYTVEKCTSHTS-KR 285 Query: 262 PSISAII 268 P+I I+ Sbjct: 286 PNIKEIL 292 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.141 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,298 Number of Sequences: 156 Number of extensions: 2381 Number of successful extensions: 21 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 2 length of query: 285 length of database: 48,119 effective HSP length: 61 effective length of query: 224 effective length of database: 38,603 effective search space: 8647072 effective search space used: 8647072 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634874|ref|NP_039167.1| ORF FPV204 Serpin gene family protein [Fowlpox virus] (342 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150588|ref|NP_150583.1| LSDV149 serpin-like protein [lumpy ... 80 6e-018 >gi|15150588|ref|NP_150583.1| LSDV149 serpin-like protein [lumpy skin disease virus] Length = 337 Score = 80.5 bits (197), Expect = 6e-018 Identities = 74/320 (23%), Positives = 155/320 (48%), Gaps = 30/320 (9%) Query: 17 LLFSPRGLHKILCNIRHGCNGNTKNQLDNLLEETIYDYGEDQAL--KHIITNISVLLIKR 74 +L SP + IL + G NG+T Q+ ++LE T + D + I ++ + L + Sbjct: 17 VLISPVSISSILSILLFGSNGDTAIQISSVLESTYSNCCSDDIIIANRIYGDLKLHLKTQ 76 Query: 75 CYNINEKFIKDSNTIYNTDVLEFYNVRQIPRIMNKWIRSRSNNKITDIGCHIYDNTKSII 134 + K + N +NT++++ +N+WI+ +++KI ++ I +NTK ++ Sbjct: 77 FIDKFGKELILVNFNHNTELIK--------NDINEWIKRLTHDKIKNLIDEISENTKLLL 128 Query: 135 AEAMFFTMKHESIFGSTRKDTITFYKYDGTSLPVEAIHADXXXXXXXXFDDIKCSVLQLW 194 A++F +K +S F + F+ + +E ++ F ++K L++ Sbjct: 129 LNAVYFKLKWKSPFDKQQTKIEKFWYDNSRYENIEMMN----DVNVYPFIELKELGLKII 184 Query: 195 KLGYA--FNMFIILPDDEKGLDNLVDNITGDVFSKIMTEQMDYKRLELRMPVFSISQETN 252 +L Y ++M I+LP D K ++ N+TG+ + + ++M+ + +++P F I + + Sbjct: 185 ELPYENNYSMIILLPKDIKKIEK---NLTGNNLT-LWIDKMNLYEVNVKIPKFKIEETYD 240 Query: 253 FCMPIFNLGCHSMFIDG--DFSGISEVSDFQLSGIIQKNIIEVQYDKVKTTKP-----LN 305 + + +LG +F DG DFS +++ + + K IE+ + + + + Sbjct: 241 LKLSLISLGIIDIF-DGSADFSNMTKNKNLSVDNFYHKTYIEIDEEGAELSAASYCCVAD 299 Query: 306 VRCS--SFYVNKPFIFIVTD 323 C+ F NKPFIF++ D Sbjct: 300 CGCNEKEFIANKPFIFLIKD 319 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.141 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,519 Number of Sequences: 156 Number of extensions: 2397 Number of successful extensions: 13 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 1 length of query: 342 length of database: 48,119 effective HSP length: 62 effective length of query: 280 effective length of database: 38,447 effective search space: 10765160 effective search space used: 10765160 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634875|ref|NP_039168.1| ORF FPV205 hypothetical protein [Fowlpox virus] (218 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,741 Number of Sequences: 156 Number of extensions: 1382 Number of successful extensions: 5 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 218 length of database: 48,119 effective HSP length: 59 effective length of query: 159 effective length of database: 38,915 effective search space: 6187485 effective search space used: 6187485 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634876|ref|NP_039169.1| ORF FPV206 G protein-coupled receptor gene family protein [Fowlpox virus] (308 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150450|ref|NP_150445.1| LSDV011 CC chemokine receptor-like ... 78 3e-017 >gi|15150450|ref|NP_150445.1| LSDV011 CC chemokine receptor-like protein S78201 [lumpy skin disease virus] Length = 381 Score = 78.2 bits (191), Expect = 3e-017 Identities = 56/248 (22%), Positives = 114/248 (45%), Gaps = 23/248 (9%) Query: 53 MYLINLIVSDILFTVTLPLKIDYYYYFFNWRWGEMACRIMSFLSYINTYVSINFMTWISV 112 M+L+NL +SD++F + P + Y W G+ C+ + ++ Y S++F+T +S+ Sbjct: 127 MFLLNLTLSDLIFVLVFPFNL-YDSIAKQWSLGDCLCKFKAMFYFVGFYNSMSFITLMSI 185 Query: 113 NRYYAVTRPHKYNSRDNIMRTK----IACACTWVIILVPMSSILFVSTTSSDHETKIRCM 168 +RY AV P K +RTK + W++ + I+ T + + Sbjct: 186 DRYLAVVHPVK----SMPIRTKRYGIVLSMVVWIVSTIESFPIMLFYETKKVYGITYCHV 241 Query: 169 EYNKVGDSMYLPPWVTIVMCFIGFVIPFAMMAISYSAVCYTVLSGISKS-TRSYRTCKLV 227 YN L ++ + G +IP ++ Y Y +L+ + S T++ + K+V Sbjct: 242 FYNDNAKIWKL--FINFEINIFGMIIPLTILLYCY----YKILNTLKTSQTKNKKAIKMV 295 Query: 228 ACILTEFVICFLPYHASVI---SYMIHIITSKTVLCENVSYYQMLLHATQCLMKLNCCMD 284 I+ V+ LP+ +V Y++++ + C + + + +H + + +C ++ Sbjct: 296 FLIVICSVLFLLPFSVTVFVSSLYLLNVFSG----CMALRFVNLAVHVAEIVSLCHCFIN 351 Query: 285 PIIYLFVS 292 P+IY F S Sbjct: 352 PLIYAFCS 359 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.330 0.139 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,287 Number of Sequences: 156 Number of extensions: 1589 Number of successful extensions: 9 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 1 length of query: 308 length of database: 48,119 effective HSP length: 62 effective length of query: 246 effective length of database: 38,447 effective search space: 9457962 effective search space used: 9457962 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634877|ref|NP_039170.1| ORF FPV207 hypothetical protein [Fowlpox virus] (100 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,398 Number of Sequences: 156 Number of extensions: 441 Number of successful extensions: 3 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 100 length of database: 48,119 effective HSP length: 50 effective length of query: 50 effective length of database: 40,319 effective search space: 2015950 effective search space used: 2015950 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634878|ref|NP_039171.1| ORF FPV208 hypothetical protein [Fowlpox virus] (67 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.328 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7859 Number of Sequences: 156 Number of extensions: 316 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 67 length of database: 48,119 effective HSP length: 43 effective length of query: 24 effective length of database: 41,411 effective search space: 993864 effective search space used: 993864 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634879|ref|NP_039172.1| ORF FPV209 HT motif gene family protein [Fowlpox virus] (130 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.326 0.141 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,729 Number of Sequences: 156 Number of extensions: 937 Number of successful extensions: 12 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 130 length of database: 48,119 effective HSP length: 54 effective length of query: 76 effective length of database: 39,695 effective search space: 3016820 effective search space used: 3016820 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634880|ref|NP_039173.1| ORF FPV210 hypothetical protein [Fowlpox virus] (66 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.311 0.127 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9922 Number of Sequences: 156 Number of extensions: 476 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 66 length of database: 48,119 effective HSP length: 42 effective length of query: 24 effective length of database: 41,567 effective search space: 997608 effective search space used: 997608 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634881|ref|NP_039174.1| ORF FPV211 EGF-like protein vaccinia C11R [Fowlpox virus] (125 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.325 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,027 Number of Sequences: 156 Number of extensions: 733 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 125 length of database: 48,119 effective HSP length: 53 effective length of query: 72 effective length of database: 39,851 effective search space: 2869272 effective search space used: 2869272 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634882|ref|NP_039175.1| ORF FPV212 serine/threonine protein kinase [Fowlpox virus] (303 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150578|ref|NP_150573.1| LSDV139 putative ser/thr protein ki... 218 1e-059 >gi|15150578|ref|NP_150573.1| LSDV139 putative ser/thr protein kinase [lumpy skin disease virus] Length = 305 Score = 218 bits (556), Expect = 1e-059 Identities = 120/308 (38%), Positives = 169/308 (53%), Gaps = 9/308 (2%) Query: 1 MPQNKVLSFPLPEGTLLEDITKNKWILGKQLGSGGFGLVYQVSCKSKEIDCVAKIELKES 60 MP+ + F EG +L D K +W LGK +G GGFG ++ ++ E + V KIE K + Sbjct: 1 MPKRNINVFE--EGDVLVDSVKKEWRLGKIIGQGGFGFIFLAYSQNNE-EYVVKIEPKSN 57 Query: 61 GGLFCEINFYNRVMKNKTSLDTWMKEQKIDYIGIPSFHGFGITIYKNVEYRFAIIQRLGR 120 G LF E FY R+ K + + W K ID++GIP F+GFG ++YRF II RLG Sbjct: 58 GPLFVEQVFYQRIGK-RDMITLWSKNNHIDHLGIPVFYGFGFHKKNGIDYRFIIINRLGC 116 Query: 121 DLENILS-EKEKFNITVXXXXXXXXXXXXXFIHSKEFSHGDIKAGNILFG-KDDDKVYLV 178 DL I+ K ++H ++H DIKA NI + +K+YL+ Sbjct: 117 DLNKIIQCNNNKLPERSVFLIASKIIMILKYLHENGYTHSDIKASNIAIDINNKNKIYLL 176 Query: 179 DYGLATKYSSNGKHKEYTINPKNRHNGTMAFTSIDAHKGVTVSRRGDLESLGFCMLKWYS 238 DYGL+ ++ NG H EY +PK HNGT+ +TSID HKGV+ SRRGDLE LG+C++KW Sbjct: 177 DYGLSYRFMINGNHVEYKRDPKKMHNGTIEYTSIDMHKGVSPSRRGDLEILGYCIIKWLG 236 Query: 239 GKLPWEKYEKEPENVQGMKEAFVN---NISKKTIPFKNAGIIYNYIKVVTKLEYEEAPNY 295 GKLPWE K + V K ++N N+ ++ I Y + L+Y+ P+Y Sbjct: 237 GKLPWENDLKNCKYVMESKIKYMNDIGNLMTDSLGSNYPEKILKYFNYIKTLQYDSIPDY 296 Query: 296 ESLKQMFL 303 E + FL Sbjct: 297 EKIMSFFL 304 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,687 Number of Sequences: 156 Number of extensions: 1888 Number of successful extensions: 13 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 1 length of query: 303 length of database: 48,119 effective HSP length: 61 effective length of query: 242 effective length of database: 38,603 effective search space: 9341926 effective search space used: 9341926 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634883|ref|NP_039176.1| ORF FPV213 hypothetical protein [Fowlpox virus] (162 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.328 0.143 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,867 Number of Sequences: 156 Number of extensions: 1066 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 0 length of query: 162 length of database: 48,119 effective HSP length: 56 effective length of query: 106 effective length of database: 39,383 effective search space: 4174598 effective search space used: 4174598 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634884|ref|NP_039177.1| ORF FPV214 Putative 13.7 kDa protein [Fowlpox virus] (124 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.316 0.134 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,726 Number of Sequences: 156 Number of extensions: 795 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 124 length of database: 48,119 effective HSP length: 53 effective length of query: 71 effective length of database: 39,851 effective search space: 2829421 effective search space used: 2829421 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634885|ref|NP_039178.1| ORF FPV215 hypothetical protein [Fowlpox virus] (74 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.344 0.142 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1415 Number of Sequences: 156 Number of extensions: 3 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 74 length of database: 48,119 effective HSP length: 50 effective length of query: 24 effective length of database: 40,319 effective search space: 967656 effective search space used: 967656 T: 11 A: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 38 (21.7 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634886|ref|NP_039179.1| ORF FPV216 Ankyrin repeat gene family protein [Fowlpox virus] (296 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.325 0.142 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,092 Number of Sequences: 156 Number of extensions: 2457 Number of successful extensions: 19 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 0 length of query: 296 length of database: 48,119 effective HSP length: 61 effective length of query: 235 effective length of database: 38,603 effective search space: 9071705 effective search space used: 9071705 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634887|ref|NP_039180.1| ORF FPV217 hypothetical protein [Fowlpox virus] (328 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.141 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,553 Number of Sequences: 156 Number of extensions: 3239 Number of successful extensions: 16 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 0 length of query: 328 length of database: 48,119 effective HSP length: 62 effective length of query: 266 effective length of database: 38,447 effective search space: 10226902 effective search space used: 10226902 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634888|ref|NP_039181.1| ORF FPV218 Ankyrin repeat gene family protein [Fowlpox virus] (461 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 53 2e-009 gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S782... 44 9e-007 gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 43 2e-006 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 41 8e-006 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 53.1 bits (126), Expect = 2e-009 Identities = 81/381 (21%), Positives = 152/381 (39%), Gaps = 73/381 (19%) Query: 37 LVKSILLRD---VDLVSILLQNGANPNNINDETVSPLAIAIKVNSPTIVSLLLDYNADTS 93 L + L RD VD+V +L+ G N N + +E +PL TI+S + Y Sbjct: 35 LFQKYLQRDSPSVDIVKLLINLGGNVNGLENEYSTPLC--------TILSNIKKYKH--- 83 Query: 94 LFPLYVSFPIIKVLVYHGIDVNVIDRESRSFLHYAAKN----DDVDTVISLILHGANVNV 149 ++K+L+ + DVN + + + L+ N ++ + ++ +I GA + Sbjct: 84 ------MLDVVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTL 137 Query: 150 QDSKGLSPL-------HHAVSKKTTLTAKILLENGARVNI---RDSLGRLPLHLGAN--- 196 G + L HH + + KILLE+G +N ++ L + N Sbjct: 138 LSKDGYTMLQVYVKTNHHIIDIE---IIKILLESGIDINTISNKEKYDTLDCYFKYNIDR 194 Query: 197 -TYEMVKLLIDYGSPIDIKDVNGSTPL----------HYAIWKSSLDTIRLLVNVSTINA 245 ++KL +D G I +D + L + + K+ LD I +NV+ ++ Sbjct: 195 IDANILKLFVDNGFIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTYINVNQVDE 254 Query: 246 LDNNCNSPLHYIILSETEILVELLLR-GADITIKDICGNTPLDILCKLRIKKLDNIKAII 304 L N PL+Y + + E +++ G +I G+T L K +N I Sbjct: 255 LGFN---PLYYSVSHNNRTIFEYIIQLGGNINCISELGDT-------LLFKAFENRSLFI 304 Query: 305 SNAFLMREVVPDLLKLCGFESNRKIISNISDLKQHEVSCIKE-----IHLMKEHSFRKNG 359 N+ L ++ + ++ + ++ + Q E IK+ I +K S R Sbjct: 305 FNSILEKKPNKKTISYTYYKLRKHLLDVGDFINQIEFDIIKKFIAHVILYVKNFSVRNRT 364 Query: 360 PT------ILDVCTDKVHFLH 374 ++ CT +++H Sbjct: 365 KAFIYFDDFIEKCTKSSNYIH 385 Score = 45.4 bits (106), Expect = 3e-007 Identities = 64/223 (28%), Positives = 96/223 (42%), Gaps = 42/223 (18%) Query: 105 KVLVYHGIDVNVIDRESRSFLHYAAKND-DVDTVISLILHGANVNVQDSKGLSPLHHAVS 163 K+ + D N I E F Y ++ VD V LI G NVN +++ +PL +S Sbjct: 17 KLSIIKSCDPNEIVNEYSLFQKYLQRDSPSVDIVKLLINLGGNVNGLENEYSTPLCTILS 76 Query: 164 -----KKTTLTAKILLENGARVNIRDSLGRLPLH-LGANTY-----EMVKLLIDYGSPID 212 K KIL+EN A VN ++S G PL+ L +N Y E++ +I G+ Sbjct: 77 NIKKYKHMLDVVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETT 136 Query: 213 IKDVNGSTPLHYAIWKSSLDTIRLLVNVSTINALDNNCNSPLHYIILSETEILVELLLRG 272 + +G T L V V T H+II + EI+ LL G Sbjct: 137 LLSKDGYTMLQ--------------VYVKT-----------NHHII--DIEIIKILLESG 169 Query: 273 ADI-TIKDICGNTPLDILCKLRIKKLDN--IKAIISNAFLMRE 312 DI TI + LD K I ++D +K + N F++++ Sbjct: 170 IDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDNGFIIKK 212 >gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S78201 [lumpy skin disease virus] Length = 211 Score = 43.9 bits (102), Expect = 9e-007 Identities = 55/182 (30%), Positives = 84/182 (45%), Gaps = 24/182 (13%) Query: 125 LHYAAKNDDVDTVISLILHGANVNVQDSKGL--SPLHHAVSKKTTLTA--KILLENGARV 180 L Y + DD++ V I V D L +PL V K L+ENG+ + Sbjct: 26 LFYYVEQDDINGVKKWIKF-----VNDCNDLYETPLFSCVEKDKVNVEILNFLIENGSDI 80 Query: 181 NIR---DSLGRLPLHLGANTY---EMVKLLIDYGSPIDIKDVNGSTPLHYAI--WKSSLD 232 N + ++L L +L N E+VK+LID GS I +D NG LH + + ++ Sbjct: 81 NFKTRDNNLSALAHYLSFNKNVEPEIVKILIDSGSSITEEDENGKNLLHMYMCNFNVRIN 140 Query: 233 TIRLLVNVSTINAL----DNNCNSPLHYIIL-SETEILVELLLRGADITIKDICGNTPLD 287 I+LL++ S +N L DNN N YI+ S+ +I L G D+ + G D Sbjct: 141 VIKLLID-SGVNFLQKDFDNN-NILYSYILFHSDKKIFDYLTSLGIDMDETNTSGYNCKD 198 Query: 288 IL 289 ++ Sbjct: 199 LI 200 >gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lumpy skin disease virus] Length = 447 Score = 43.1 bits (100), Expect = 2e-006 Identities = 76/383 (19%), Positives = 150/383 (38%), Gaps = 37/383 (9%) Query: 103 IIKVLVYHGIDVNVIDRESRSFLHY---AAKNDDVDTVISLILHGANVNVQDSKGLSPLH 159 I+ LV +G D+N + + LHY + N VD + LI GA++ + G + LH Sbjct: 65 ILSFLVDNGADLNTKIKYKYNALHYYLYSNSNVTVDIIKFLIKKGADIT-KKCNGDNVLH 123 Query: 160 HAVSKKTTLTAKILLENGARVNIRDSLGRLPLHLGANTY----------EMVKLL--IDY 207 + K I ++++ D L H N Y + +KLL +D+ Sbjct: 124 TYLCNKNIDFKVIKFLVNKKIDLGDR--NLDDHTPVNIYIRNKRNNCEIDTLKLLFLVDF 181 Query: 208 G----SPIDIKDVNGSTPLHYAIWKSSLDTIRLLVNVSTINALDNNCNSPLHYIILSETE 263 I + ++ + + SLD + ++ +IN++D+N +P+ Y +S + Sbjct: 182 NIYNKEDIFLSALDVFLDYLKSYTRKSLDIVNYILENISINSVDSNGFNPILYATVSGQK 241 Query: 264 ILVELLLR-GADITIKDICGNT--PLDIL------CKLRIKKLDNIKAIISNAFLMREVV 314 + + L+ G I I CG T L ++ K + K N++ I + + + Sbjct: 242 VFFDYFLKLGCSINITTSCGETCGSLSLMDCDYCTFKTFLSKKPNLQTIENTLSCLSNYL 301 Query: 315 PDLLKL-CGFESNRKIISNISDLKQHEVSCIKEIHLMKEHSFRKNGPTILDVCTDKV--H 371 D+ F+ ++++ L + + I L + I+ +C+DK+ Sbjct: 302 EDIYYCDLKFKMFKELLLEAFMLDSEFYNRHESIKLYFPKTISLYKEPIVQMCSDKIGDK 361 Query: 372 FLHRLVNARDNVQYKDFPIYCKYIKFRXXXXXX---XXXXXXXXXXXXXXXXXXHEYTSW 428 ++ ++ +++Y KY + + W Sbjct: 362 SVYDIIFKNSDIRYCYNDYINKYTNLKYYGNLIRKCILASKMRKKNIVKIIKTINIAPYW 421 Query: 429 HDLPYELKHYIIEYINIEFIKSL 451 + LP E+K YII +++ IK L Sbjct: 422 NTLPTEIKMYIINFLSDNEIKLL 444 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.140 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,860 Number of Sequences: 156 Number of extensions: 2593 Number of successful extensions: 44 Number of sequences better than 1.0e-005: 4 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 13 length of query: 461 length of database: 48,119 effective HSP length: 65 effective length of query: 396 effective length of database: 37,979 effective search space: 15039684 effective search space used: 15039684 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634889|ref|NP_039182.1| ORF FPV219 Ankyrin repeat gene family protein [Fowlpox virus] (434 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 64 8e-013 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 47 1e-007 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 46 2e-007 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 63.9 bits (154), Expect = 8e-013 Identities = 93/438 (21%), Positives = 192/438 (43%), Gaps = 61/438 (13%) Query: 11 NLKEVIRIIRSDNINLESINDEDDLSPLHHAVSRGY----KEIVISMLEHGADVNLCNDE 66 ++ +V++I+ +N ++ N + + +PL+ +S GY KEI++ M++ GA+ L + + Sbjct: 83 HMLDVVKILIENNADVNKKNSDGE-TPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKD 141 Query: 67 VCSPLHIAIKND----NVEMVQLLIDNGADTDCCNNTIHGTPLQCAILNENYRITDALLE 122 + L + +K + ++E++++L+++G D + +N L C RI +L+ Sbjct: 142 GYTMLQVYVKTNHHIIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRIDANILK 201 Query: 123 SGADTHEIYTKNHPIIEAIKXXXXXXXXXXXRHGADVNTFDPLYGYPIHLAIRYGNIDII 182 D I K + K N D ++ Y N++ + Sbjct: 202 LFVDNGFIIKKEDKSHKK-KLMEYLNSLLYDNRRVKKNILDFIF--------TYINVNQV 252 Query: 183 KELLYHGVIESYSLYPSLLHQSIMCNNKEVVLLLISMGFDVNAKDNEGNTPMHLAVQKNL 242 EL ++ LY S+ H NN+ + +I +G ++N G+T + A + Sbjct: 253 DELGFN------PLYYSVSH-----NNRTIFEYIIQLGGNINCISELGDTLLFKAFENRS 301 Query: 243 VGIVKILLDKGADTSIINNLSVTCLRSCYVYGN--NSTE--ILQLLISRIVIN-KYANIP 297 + I +L+K + I+ + G+ N E I++ I+ +++ K ++ Sbjct: 302 LFIFNSILEKKPNKKTISYTYYKLRKHLLDVGDFINQIEFDIIKKFIAHVILYVKNFSVR 361 Query: 298 CRSIAGMNYNWSLIESNQKTNSYKLECEKEILKMLDVKIGSRSLFDIYLNK-------IE 350 R+ A + ++ IE K+++Y + + I + ++F + NK I Sbjct: 362 NRTKAFIYFD-DFIEKCTKSSNY----------IHNTYINNETIFQLCFNKKYIPISVIS 410 Query: 351 SN-MLLRLYNKVTLPEFIIYKDIIINAVYTAKERESLISKSFTVLEDTISNDTIDNLWKN 409 +N LL+ + K+ I+ K+I + Y E +S + L DT S W Sbjct: 411 NNEKLLKKHTKLFYYGNILKKNIEKSKKY--YENIYKVSCCISNLCDTCS------YWNT 462 Query: 410 IPIEVKYMILRYLGKDDL 427 IP+E+K+ I+ L +D+ Sbjct: 463 IPLEIKFKIVNNLSLNDI 480 Score = 48.9 bits (115), Expect = 3e-008 Identities = 43/133 (32%), Positives = 72/133 (53%), Gaps = 17/133 (12%) Query: 163 DPLYGYPIHLAIRYGN--IDIIKELLYHGVIESYSLYPSLLHQSIMCNNKEVVLLLISMG 220 D +Y Y +A R GN + IIK + ++ YSL+ L + + ++V LLI++G Sbjct: 4 DDIYNY---IAFR-GNPKLSIIKSCDPNEIVNEYSLFQKYLQRD--SPSVDIVKLLINLG 57 Query: 221 FDVNAKDNEGNTPM-----HLAVQKNLVGIVKILLDKGADTSIINNLSVT---CLRSCYV 272 +VN +NE +TP+ ++ K+++ +VKIL++ AD + N+ T CL S Sbjct: 58 GNVNGLENEYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKNSDGETPLYCLLS-NG 116 Query: 273 YGNNSTEILQLLI 285 Y N+ EIL +I Sbjct: 117 YIKNNKEILLYMI 129 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 47.0 bits (110), Expect = 1e-007 Identities = 59/262 (22%), Positives = 112/262 (42%), Gaps = 41/262 (15%) Query: 47 KEIVISMLEHGADVNL--CNDEVCSPLHIAIKNDNVEMVQLLIDNGADTDCCNNTIHGTP 104 K+ V ++ G DVN C++E L++ K+ ++++++LL++NGAD + + + T Sbjct: 16 KDAVELLIRTGFDVNEENCDNESILLLYLKRKDVSIDILRLLLENGADVN--YRSYYDTS 73 Query: 105 LQCAILNENY------RITDALLESGADTHEIYTKNHPIIEAIKXXXXXXXXXXXRHGAD 158 + I N +I LL+ GAD + ++ H + Sbjct: 74 ITSVIRNYELDSNTIKQIIILLLKFGADIN---------LKPFNGVYTIMPFIYNFHINN 124 Query: 159 VNTFDPLYGYPIHLAIRYGNIDIIKELLYHGVIESYSLYPSLLHQSIMCNNKEVVLLLIS 218 N F L I+ ++ ID L+H ES+S+ +V+ +L+S Sbjct: 125 CNMFKFLLSKGIY--VKNDIIDSRGFNLFHMYFESFSV------------KIDVIKILLS 170 Query: 219 MGFDVNAKDNEGNTPMHLAVQKNL----VGIVKILLDKGADTSIINN----LSVTCLRSC 270 + K +G TPM++ + + ++K L+ KG + NN L T LRS Sbjct: 171 FNVGLFEKSFKGLTPMNIYFDHFIDVISLKVIKYLISKGVNIETNNNGSKSLLETFLRSN 230 Query: 271 YVYGNNSTEILQLLISRIVINK 292 + ++L ++ + +NK Sbjct: 231 KILSRKCFKVLNFILKYVKLNK 252 Score = 41.2 bits (95), Expect = 6e-006 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 19/176 (10%) Query: 196 LYPSLLHQSIMCNNKEVVLLLISMGFDVNAK--DNEGNTPMHLAVQKNLVGIVKILLDKG 253 LY +LH + +K+ V LLI GFDVN + DNE ++L + + I+++LL+ G Sbjct: 4 LYEYVLHSPTV--DKDAVELLIRTGFDVNEENCDNESILLLYLKRKDVSIDILRLLLENG 61 Query: 254 ADTSIINNLSVTCLRSCYVYGNNSTEILQLLISRIVINKYANIP----CRSIAGMNYNWS 309 AD + + + Y +S I Q++I + N+ +I YN+ Sbjct: 62 ADVNYRSYYDTSITSVIRNYELDSNTIKQIIILLLKFGADINLKPFNGVYTIMPFIYNFH 121 Query: 310 LIESNQKTNSYKLECEKEILKMLDVKIGSR--SLFDIYLN----KIESNMLLRLYN 359 + N +K K I D+ I SR +LF +Y KI+ +L +N Sbjct: 122 I----NNCNMFKFLLSKGIYVKNDI-IDSRGFNLFHMYFESFSVKIDVIKILLSFN 172 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 46.2 bits (108), Expect = 2e-007 Identities = 64/285 (22%), Positives = 125/285 (43%), Gaps = 44/285 (15%) Query: 10 NNLKEVIRIIRSDNINLESINDEDDLSPLHHAVSRGYKEIVISMLEH----GADVNLCND 65 N++K +I +I S ++ + D P+ VS K IS+ E+ + N+ Sbjct: 88 NHVKSIIELITSYGVSFNDEPIKKDSYPILFLVSNE-KFNHISLYEYLENNNINFNIVRS 146 Query: 66 EVCSPLHIAIKNDN---VEMVQLLIDNGADTDCCNNTIHGTPLQ---CAILNENYRITDA 119 + + LH+ +++ N + +++LLI N + + + TPL C NY + + Sbjct: 147 DGYNLLHLYLESCNNIKLSVLKLLIKNNVNVNGLTRFRNLTPLHIYLCKGYCLNYSVINF 206 Query: 120 LLESGADT--------HEIYTK--NHPIIEAIKXXXXXXXXXXXRHGADVNT-----FDP 164 L+++G++ + +T N + +++ + GAD+N P Sbjct: 207 LIDTGSEINCGKETLLYSFFTTCDNEKVFKSL-------TTKLIKKGADINQKSESGLTP 259 Query: 165 LYGYPIHLAIRY-GNIDIIKELLYHGVIESYSLYPSLLHQSIMCNNKEVVLLLISM---- 219 L G+ + + NI I + ++ + +LLH I +V L IS Sbjct: 260 LMGFVAYSDLATPNNIKFILSCGGNQLVVNPQSNETLLH--IYLRRYDVSLSTISTLLES 317 Query: 220 GFDVNAKDNEGNTPMHLAVQKNL----VGIVKILLDKGADTSIIN 260 G ++N+ + + TP+H+ V KN+ + +V L+ KGA T +N Sbjct: 318 GININSVNFKNYTPLHVYVDKNIEHLSLDVVDYLIYKGATTERVN 362 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,072 Number of Sequences: 156 Number of extensions: 3227 Number of successful extensions: 45 Number of sequences better than 1.0e-005: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 14 length of query: 434 length of database: 48,119 effective HSP length: 64 effective length of query: 370 effective length of database: 38,135 effective search space: 14109950 effective search space used: 14109950 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634890|ref|NP_039183.1| ORF FPV220 hypothetical protein [Fowlpox virus] (117 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.330 0.144 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,349 Number of Sequences: 156 Number of extensions: 536 Number of successful extensions: 5 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 0 length of query: 117 length of database: 48,119 effective HSP length: 52 effective length of query: 65 effective length of database: 40,007 effective search space: 2600455 effective search space used: 2600455 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634891|ref|NP_039184.1| ORF FPV221 vaccinia A47L homolog [Fowlpox virus] (183 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,576 Number of Sequences: 156 Number of extensions: 1696 Number of successful extensions: 17 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 0 length of query: 183 length of database: 48,119 effective HSP length: 57 effective length of query: 126 effective length of database: 39,227 effective search space: 4942602 effective search space used: 4942602 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634892|ref|NP_039185.1| ORF FPV222 Ankyrin repeat gene family protein [Fowlpox virus] (747 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 67 2e-013 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 65 8e-013 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 58 8e-011 gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S782... 43 3e-006 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 66.6 bits (161), Expect = 2e-013 Identities = 64/242 (26%), Positives = 109/242 (44%), Gaps = 22/242 (9%) Query: 18 DVVSVRKYLEKGINPNEKNKDNCTMLYTAVEHRYI----DIIKLLLDHGADPNIYSSDHM 73 DVV + +E + N+KN D T LY + + YI +I+ ++ GA+ + S D Sbjct: 86 DVVKI--LIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGY 143 Query: 74 TPLH----SVSVIIPIRKISKLITKYGNLVTLANYR-----NTFFVYNENR-NLEIAKML 123 T L + II I I L+ ++ T++N + +F YN +R + I K+ Sbjct: 144 TMLQVYVKTNHHIIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLF 203 Query: 124 IQNGALVNMNNMKNITPLHIASSSGSY------KMVELLLLHGANTNALTSYGETSLHYS 177 + NG ++ + + L +S Y K + + N N + G L+YS Sbjct: 204 VDNGFIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTYINVNQVDELGFNPLYYS 263 Query: 178 VSSNDLNISELLIENGTNVNVANKDSITALIIAVEIMSIDLVRLLLDKGADTNAIGLERF 237 VS N+ I E +I+ G N+N ++ T L A E S+ + +L+K + I + Sbjct: 264 VSHNNRTIFEYIIQLGGNINCISELGDTLLFKAFENRSLFIFNSILEKKPNKKTISYTYY 323 Query: 238 KL 239 KL Sbjct: 324 KL 325 Score = 66.2 bits (160), Expect = 3e-013 Identities = 86/406 (21%), Positives = 170/406 (41%), Gaps = 57/406 (14%) Query: 381 LKLLKLAGASFNLTNRKGRTPLHTACKY----NNTEAVKYLIESGCDTNIVDVMSFTPLN 436 +K+L A N N G TPL+ NN E + Y+I+ G +T ++ +T L Sbjct: 88 VKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQ 147 Query: 437 YAVYYERE----DTVKILLESGCVDPNLCDYKEVSPIIQA-----IKRNNKNIIKMLLNA 487 V + +KILLESG +D N KE + I R + NI+K+ ++ Sbjct: 148 VYVKTNHHIIDIEIIKILLESG-IDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDN 206 Query: 488 GIDIKPINECYGLHMLAALH-----NKDLLKWLLCTI-SELEVNGVDDHYVPLASYVAEL 541 G IK ++ + ++ L+ N+ + K +L I + + VN VD+ Y Sbjct: 207 GFIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTYINVNQVDELGFNPLYYSVSH 266 Query: 542 SDIRIMEILIEKGLDLNKVTGPDETMFTMIFSATSDLRKSIIDLLISQIAADEEFS-EGF 600 ++ I E +I+ G ++N ++ E T++F A + I + ++ + + S + Sbjct: 267 NNRTIFEYIIQLGGNINCIS---ELGDTLLFKAFENRSLFIFNSILEKKPNKKTISYTYY 323 Query: 601 KINKNMIQTDKYLLRVYHECKNQ--------VSKMGEIKLGDGFTMIDIYKNRRSIHVNF 652 K+ K+++ ++ ++ + + V F D + + + N+ Sbjct: 324 KLRKHLLDVGDFINQIEFDIIKKFIAHVILYVKNFSVRNRTKAFIYFDDFIEKCTKSSNY 383 Query: 653 LARYAMQLSTIDLREVPIYRKYLEILI----NPAIKRHKILNAAKDTMNNILHRKEKF-- 706 + + TI ++ +KY+ I + +K+H L + + + + +K+ Sbjct: 384 IHNTYINNETI--FQLCFNKKYIPISVISNNEKLLKKHTKLFYYGNILKKNIEKSKKYYE 441 Query: 707 -----------------YWNLLPVEIKFNILEYLNSKDLISLIHSN 735 YWN +P+EIKF I+ L+ D+ + +N Sbjct: 442 NIYKVSCCISNLCDTCSYWNTIPLEIKFKIVNNLSLNDIEMFLKNN 487 Score = 65.1 bits (157), Expect = 6e-013 Identities = 56/213 (26%), Positives = 102/213 (47%), Gaps = 41/213 (19%) Query: 28 KGINPNE-KNKDNCTMLYTAVEHRYIDIIKLLLDHGADPNIYSSDHMTPLHSVSVIIPIR 86 K +PNE N+ + Y + +DI+KLL++ G + N +++ TPL ++ Sbjct: 22 KSCDPNEIVNEYSLFQKYLQRDSPSVDIVKLLINLGGNVNGLENEYSTPLCTI------- 74 Query: 87 KISKLITKYGNLVTLANYRNTFFVYNENRNLEIAKMLIQNGALVNMNNMKNITPLHIASS 146 L + Y++ L++ K+LI+N A VN N TPL+ S Sbjct: 75 -----------LSNIKKYKHM---------LDVVKILIENNADVNKKNSDGETPLYCLLS 114 Query: 147 SGSYKMVELLLLH----GANTNALTSYGETSLHYSVSSN----DLNISELLIENGTNVN- 197 +G K + +LL+ GA T L+ G T L V +N D+ I ++L+E+G ++N Sbjct: 115 NGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIIDIEIIKILLESGIDINT 174 Query: 198 VANKDSITAL----IIAVEIMSIDLVRLLLDKG 226 ++NK+ L ++ + ++++L +D G Sbjct: 175 ISNKEKYDTLDCYFKYNIDRIDANILKLFVDNG 207 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 64.7 bits (156), Expect = 8e-013 Identities = 120/567 (21%), Positives = 211/567 (37%), Gaps = 108/567 (19%) Query: 182 DLNISELLIENGTNVNVANKD--SITALIIAVEIMSIDLVRLLLDKGADTNAIGLERFKL 239 D + ELLI G +VN N D SI L + + +SID++RLLL+ GAD N ++ Sbjct: 15 DKDAVELLIRTGFDVNEENCDNESILLLYLKRKDVSIDILRLLLENGADVN------YRS 68 Query: 240 YVTETKQXXXXXXXXXXXXXXXXXXMINEYIAS-ELYDWNRNSATSKLMFRSCFEPCTVP 298 Y + ++ ++ A L +N ++ C Sbjct: 69 YYDTSITSVIRNYELDSNTIKQIIILLLKFGADINLKPFNGVYTIMPFIYNFHINNCN-- 126 Query: 299 VTLATRKGSKELLEILLEYGC---NPDICEKTTSTYAMHYAVIRKHYEMLNILIRYDAYT 355 + + LL G N I + + + M++ +++ IL+ ++ Sbjct: 127 -----------MFKFLLSKGIYVKNDIIDSRGFNLFHMYFESFSVKIDVIKILLSFNVGL 175 Query: 356 DVKDRQQNTPAHYAVKLPISE-SCKYLKLLKLAGASFNLTNRKGRTPLHTACKYNNTEAV 414 K + TP + I S K +K L G + N ++ L T + N Sbjct: 176 FEKSFKGLTPMNIYFDHFIDVISLKVIKYLISKGVNIETNNNGSKSLLETFLRSNK---- 231 Query: 415 KYLIESGCDTNIVDVMSFTPLNYAVYYEREDTVKILLESGCVDPNLCDYKEVSPIIQAIK 474 I+ F LN+ + Y V N D K ++PI+ + K Sbjct: 232 -----------ILSRKCFKVLNFILKY--------------VKLNKVDEKGLNPILISAK 266 Query: 475 RNNKNIIKMLLNAGIDIKPINECYGLHMLAAL--HNKDLLKWLLCTISELEVNGVDDHYV 532 +N + LL G DI +++ + A+ N D+L +L Sbjct: 267 ADNYDAFNHLLKLGDDIYNVSKKGNTVITYAIKRENIDILNRVLA--------------- 311 Query: 533 PLASYVAELSDIRIMEILIEKGLDLNKVTGPDETMFTMIFSATSDLRKSIIDLLISQIAA 592 I + LI++ + G + I RKS++ +L+ Q + Sbjct: 312 -----------IEPKKYLIKQTFEYFSNYG-----YGGINGLFLSERKSLMMILLMQYS- 354 Query: 593 DEEFSEGFKIN----KNMIQTDKYLLRVYHECKNQVSKMGEIKLGDGFTMIDIYKNRR-- 646 FK+ KN + + + M + K+G ++ D+ NR Sbjct: 355 -------FKVYPIFYKNFYEVRLLFPNIIEMYNEDILLMEKEKVGKNISVYDLVFNREKE 407 Query: 647 SIHVNFLARYAMQLSTIDLREVPIYRKYLEILINPAIKRHKILNAAKDTMNNILHRKEKF 706 +I V FL + + IY + ++ +IN + LN + + +N ++K Sbjct: 408 TIPVKFLKNE----NFLKFTSSTIYGERIKQIINNTYRYENCLNTSINILNKYCNKKN-- 461 Query: 707 YWNLLPVEIKFNILEYLNSKDLISLIH 733 YWN LP EIK +ILEYL+ D ++I+ Sbjct: 462 YWNYLPTEIKIHILEYLDFSDFDTIIN 488 Score = 51.6 bits (122), Expect = 7e-009 Identities = 54/210 (25%), Positives = 95/210 (44%), Gaps = 21/210 (10%) Query: 18 DVVSVRKYLEKGINPNEKNKDN--CTMLYTAVEHRYIDIIKLLLDHGADPNIYSSDHMTP 75 D +V + G + NE+N DN +LY + IDI++LLL++GAD N Y S + T Sbjct: 15 DKDAVELLIRTGFDVNEENCDNESILLLYLKRKDVSIDILRLLLENGADVN-YRSYYDTS 73 Query: 76 LHSVSVII-----PIRKISKLITKYGNLVTLANYRNTF----FVYNEN-RNLEIAKMLIQ 125 + SV I++I L+ K+G + L + + F+YN + N + K L+ Sbjct: 74 ITSVIRNYELDSNTIKQIIILLLKFGADINLKPFNGVYTIMPFIYNFHINNCNMFKFLLS 133 Query: 126 NGALVNMNNMK----NITPLHIASSSGSYKMVELLLLHGANTNALTSYGETSLH----YS 177 G V + + N+ ++ S S ++++LL + G T ++ + Sbjct: 134 KGIYVKNDIIDSRGFNLFHMYFESFSVKIDVIKILLSFNVGLFEKSFKGLTPMNIYFDHF 193 Query: 178 VSSNDLNISELLIENGTNVNVANKDSITAL 207 + L + + LI G N+ N S + L Sbjct: 194 IDVISLKVIKYLISKGVNIETNNNGSKSLL 223 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 58.2 bits (139), Expect = 8e-011 Identities = 86/407 (21%), Positives = 176/407 (43%), Gaps = 75/407 (18%) Query: 382 KLLKLAGASFNLTNRKGRTPLHTACKYNNTEA---VKYLIESGCDTNIVDVMSFTPLNYA 438 KL+K GA N + G TPL Y++ +K+++ G + +V+ S L + Sbjct: 241 KLIK-KGADINQKSESGLTPLMGFVAYSDLATPNNIKFILSCGGNQLVVNPQSNETLLH- 298 Query: 439 VYYERED----TVKILLESGCVDPNLCDYKEVSPIIQAIKRN----NKNIIKMLLNAGID 490 +Y R D T+ LLESG ++ N ++K +P+ + +N + +++ L+ G Sbjct: 299 IYLRRYDVSLSTISTLLESG-ININSVNFKNYTPLHVYVDKNIEHLSLDVVDYLIYKGAT 357 Query: 491 IKPIN--ECYGLHMLAALHNKD-------------LLKWLLCTISELEVNGVDDHYVPLA 535 + +N +C+ +L K+ +LK+ I+E ++ G + PL Sbjct: 358 TERVNRYDCFAKTILEVFLEKNKFLNNSSRYFINYILKYF--PINEKDLYG----FTPLL 411 Query: 536 SYVAELSDIRIMEILIEKGLDLNKVTG--------PDETMFTMIFSATSDLRKSIIDLLI 587 S V ++++ + G +N ++ P E + D + +I + Sbjct: 412 SSVY-VNNVNFFNYFLRLGSSINVISEIGETCVSIPIENQYKRFLKIVLDSKPNIKTIKA 470 Query: 588 S-QIAADEEFSEG--FKINKNMIQ------TDKY---------LLRVYHECKNQVSKMGE 629 + + +D+EF+ FK+ K+ I+ D+Y V +EC+ + M Sbjct: 471 TLRYLSDKEFNTRTKFKLMKHCIKYLFTLDPDEYKNHRFIFSKFKSVVNECQKDIITMKS 530 Query: 630 IKLGDGFTMIDIYKNRRSIHVNFLARYAMQLSTIDLREV---PIYRKYLEILINPAIKRH 686 L I+ ++H +L +T+++R+ IY + + +IN +I++ Sbjct: 531 TFLKTVSVYDLIFNKNGTMHKRYL-------NTMEVRKYLKSNIYAERVRCVINNSIEKD 583 Query: 687 KILNAAKDTMNNILHRKEKFYWNLLPVEIKFNILEYLNSKDLISLIH 733 K +++ +N + W++LP EIK NI ++ +D+ + H Sbjct: 584 KKIDSIIKKVNILCKHT---IWDILPEEIKDNIFNCMSLRDIRVIFH 627 Score = 50.4 bits (119), Expect = 2e-008 Identities = 93/472 (19%), Positives = 174/472 (36%), Gaps = 56/472 (11%) Query: 44 YTAVEHRYIDIIKLLLDHGADPNIYSSDHMTPLHSVS------VIIPIRKISKLITKYG- 96 Y + +H ID++K+L + G N++ + T L ++ I +LIT YG Sbjct: 43 YVSKKHIRIDVLKILFEIGCKENLHRLSYYTLLSFFKNYKIKYNFNHVKSIIELITSYGV 102 Query: 97 ----NLVTLANYRNTFFVYNENRN-LEIAKMLIQNGALVNMNNMKNITPLHI---ASSSG 148 + +Y F V NE N + + + L N N+ LH+ + ++ Sbjct: 103 SFNDEPIKKDSYPILFLVSNEKFNHISLYEYLENNNINFNIVRSDGYNLLHLYLESCNNI 162 Query: 149 SYKMVELLLLHGANTNALTSYGE-TSLH-YSVSSNDLNIS--ELLIENGTNVNVANKDSI 204 +++LL+ + N N LT + T LH Y LN S LI+ G+ +N + + Sbjct: 163 KLSVLKLLIKNNVNVNGLTRFRNLTPLHIYLCKGYCLNYSVINFLIDTGSEINCGKETLL 222 Query: 205 TALIIAVEIMSI--DLVRLLLDKGADTNAIGLERFKLYVTETKQXXXXXXXXXXXXXXXX 262 + + + L L+ KGAD N + + Sbjct: 223 YSFFTTCDNEKVFKSLTTKLIKKGADIN------------QKSESGLTPLMGFVAYSDLA 270 Query: 263 XXMINEYIASELYDWNRNSATSKLMFRSCFEPCTVPVTLATRKGSKELLEILLEYGCNPD 322 ++I S ++L+ + + L S + LLE G N Sbjct: 271 TPNNIKFILS--------CGGNQLVVNPQSNETLLHIYLRRYDVSLSTISTLLESGIN-- 320 Query: 323 ICEKTTSTYAMHYAVIRKHYEMLNI-LIRYDAYTDVKDRQQNTPAHYAVKLP-------- 373 I Y + + K+ E L++ ++ Y Y + N +A + Sbjct: 321 INSVNFKNYTPLHVYVDKNIEHLSLDVVDYLIYKGATTERVNRYDCFAKTILEVFLEKNK 380 Query: 374 -ISESCKYLKLLKLAGASFNLTNRKGRTPLHTACKYNNTEAVKYLIESGCDTNIVDVMSF 432 ++ S +Y L N + G TPL ++ NN Y + G N++ + Sbjct: 381 FLNNSSRYFINYILKYFPINEKDLYGFTPLLSSVYVNNVNFFNYFLRLGSSINVISEIGE 440 Query: 433 TPLNYAVYYEREDTVKILLESGCVDPNLCDYKEVSPIIQAIKRNNKNIIKML 484 T ++ + + + +KI+L+S PN+ K + + N + K++ Sbjct: 441 TCVSIPIENQYKRFLKIVLDS---KPNIKTIKATLRYLSDKEFNTRTKFKLM 489 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,392 Number of Sequences: 156 Number of extensions: 5036 Number of successful extensions: 73 Number of sequences better than 1.0e-005: 4 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 25 length of query: 747 length of database: 48,119 effective HSP length: 69 effective length of query: 678 effective length of database: 37,355 effective search space: 25326690 effective search space used: 25326690 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 96 (41.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634893|ref|NP_039186.1| ORF FPV223 Ankyrin repeat gene family protein [Fowlpox virus] (141 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.325 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,733 Number of Sequences: 156 Number of extensions: 808 Number of successful extensions: 18 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 0 length of query: 141 length of database: 48,119 effective HSP length: 54 effective length of query: 87 effective length of database: 39,695 effective search space: 3453465 effective search space used: 3453465 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634894|ref|NP_039187.1| ORF FPV224 Ankyrin repeat gene family protein [Fowlpox virus] (146 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 48 2e-008 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 47.8 bits (112), Expect = 2e-008 Identities = 37/128 (28%), Positives = 64/128 (49%), Gaps = 16/128 (12%) Query: 2 NINATDNSLSTPLHHAINLLKT-----DIVSLLMQYKADASIRDSKGITPFCYAMYLGYY 56 N+N +N STPL ++ +K D+V +L++ AD + ++S G TP + GY Sbjct: 59 NVNGLENEYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKNSDGETPLYCLLSNGYI 118 Query: 57 GVNKDILNIITRYNSINGTTRDINDVYTILLNNKKKNYVFVNLHDAARLGYVYILKKIIY 116 NK+IL + + + TT D YT+L K N+ +++ I+K ++ Sbjct: 119 KNNKEILLYMIQMGA--ETTLLSKDGYTMLQVYVKTNHHIIDIE---------IIKILLE 167 Query: 117 NGKNINRI 124 +G +IN I Sbjct: 168 SGIDINTI 175 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,660 Number of Sequences: 156 Number of extensions: 1378 Number of successful extensions: 19 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 2 length of query: 146 length of database: 48,119 effective HSP length: 55 effective length of query: 91 effective length of database: 39,539 effective search space: 3598049 effective search space used: 3598049 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634895|ref|NP_039188.1| ORF FPV225 vaccinia B20R homolog [Fowlpox virus] (104 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 39 3e-006 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 39 3e-006 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 39.3 bits (90), Expect = 3e-006 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 46 YRDMIEKKIRYILDKPNLVYKVINCMSEYMDS-TYWMFLPTEIKFKVLSYLSSKDL 100 Y ++++K I +YKV C+S D+ +YW +P EIKFK+++ LS D+ Sbjct: 425 YGNILKKNIEKSKKYYENIYKVSCCISNLCDTCSYWNTIPLEIKFKIVNNLSLNDI 480 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 39.3 bits (90), Expect = 3e-006 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 45 IYRDMIEKKIRYILDKPNLVYKVINCMSEYMDS-TYWMFLPTEIKFKVLSYLSSKDLYFI 103 IY + I++ I N + IN +++Y + YW +LPTEIK +L YL D I Sbjct: 427 IYGERIKQIINNTYRYENCLNTSINILNKYCNKKNYWNYLPTEIKIHILEYLDFSDFDTI 486 Query: 104 I 104 I Sbjct: 487 I 487 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.326 0.143 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,254 Number of Sequences: 156 Number of extensions: 774 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 2 length of query: 104 length of database: 48,119 effective HSP length: 51 effective length of query: 53 effective length of database: 40,163 effective search space: 2128639 effective search space used: 2128639 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634896|ref|NP_039189.1| ORF FPV226 serine/threonine protein kinase [Fowlpox virus] (292 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150578|ref|NP_150573.1| LSDV139 putative ser/thr protein ki... 203 4e-055 >gi|15150578|ref|NP_150573.1| LSDV139 putative ser/thr protein kinase [lumpy skin disease virus] Length = 305 Score = 203 bits (517), Expect = 4e-055 Identities = 104/288 (36%), Positives = 166/288 (57%), Gaps = 7/288 (2%) Query: 2 EGIPLIDIYGKQWKIDKLIGCGGFGCVYSTQCASNTRQAVIKVESLNNTTMVSEVLVYNN 61 EG L+D K+W++ K+IG GGFG ++ + N + V+K+E +N + E + Y Sbjct: 11 EGDVLVDSVKKEWRLGKIIGQGGFGFIFLAY-SQNNEEYVVKIEPKSNGPLFVEQVFYQR 69 Query: 62 IYDKNRIALWKNYKNIDHLGIPMYYGCGSFKRNTMYYRFILLERLVENTKELLK--RVKK 119 I ++ I LW +IDHLGIP++YG G K+N + YRFI++ RL + ++++ K Sbjct: 70 IGKRDMITLWSKNNHIDHLGIPVFYGFGFHKKNGIDYRFIIINRLGCDLNKIIQCNNNKL 129 Query: 120 PKPLIKNIMKDMLYTLEYIHEHGISHGDIKPENIMVD--GRYRSYLIDYGIVSYFIVNGK 177 P+ + I ++ L+Y+HE+G +H DIK NI +D + + YL+DYG+ F++NG Sbjct: 130 PERSVFLIASKIIMILKYLHENGYTHSDIKASNIAIDINNKNKIYLLDYGLSYRFMINGN 189 Query: 178 HVKYYKESKNWHRGTLYYASLDAHNGTCVTRRGDLESLGYCMLKWAGIPLPWKVFGNNGN 237 HV+Y ++ K H GT+ Y S+D H G +RRGDLE LGYC++KW G LPW+ N Sbjct: 190 HVEYKRDPKKMHNGTIEYTSIDMHKGVSPSRRGDLEILGYCIIKWLGGKLPWENDLKNCK 249 Query: 238 MVHVAKCDFIKRVHKNKVNIKSAN--KGIYDYIKCVTKLSYEEKPDYD 283 V +K ++ + + +N + I Y + L Y+ PDY+ Sbjct: 250 YVMESKIKYMNDIGNLMTDSLGSNYPEKILKYFNYIKTLQYDSIPDYE 297 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.141 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,086 Number of Sequences: 156 Number of extensions: 2292 Number of successful extensions: 16 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 1 length of query: 292 length of database: 48,119 effective HSP length: 61 effective length of query: 231 effective length of database: 38,603 effective search space: 8917293 effective search space used: 8917293 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634897|ref|NP_039190.1| ORF FPV227 Ankyrin repeat gene family protein [Fowlpox virus] (361 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 47 1e-007 gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S782... 45 3e-007 gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 42 3e-006 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 46.6 bits (109), Expect = 1e-007 Identities = 35/129 (27%), Positives = 71/129 (54%), Gaps = 15/129 (11%) Query: 73 EMVKALLEHKADPNIFDDNFDYPI----TNSIIENKVEIVKILLQYGADKTMINE--FDL 126 ++VK L+E+ AD N + + + P+ +N I+N EI+ ++Q GA+ T++++ + + Sbjct: 86 DVVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTM 145 Query: 127 LHDAIKNKH----IDMAKILIDNGISL-TMKDTDDYTPL----HYAMLDNDTSVIYNLLD 177 L +K H I++ KIL+++GI + T+ + + Y L Y + D +++ +D Sbjct: 146 LQVYVKTNHHIIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVD 205 Query: 178 YIFKVKGYD 186 F +K D Sbjct: 206 NGFIIKKED 214 >gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S78201 [lumpy skin disease virus] Length = 211 Score = 45.1 bits (105), Expect = 3e-007 Identities = 50/163 (30%), Positives = 84/163 (50%), Gaps = 14/163 (8%) Query: 24 RYCVRMLFNAVKFNNIRLVMHLLRNGVDPNFYDEYMRSPIHYAVEKG--NTEMVKALLEH 81 RYC LF V+ ++I V ++ D N + +P+ VEK N E++ L+E+ Sbjct: 21 RYC-NPLFYYVEQDDINGVKKWIKFVNDCN---DLYETPLFSCVEKDKVNVEILNFLIEN 76 Query: 82 KADPNIFD-DNFDYPITNSIIENK---VEIVKILLQYGADKTMINEF--DLLHDAIKNKH 135 +D N DN + + + NK EIVKIL+ G+ T +E +LLH + N + Sbjct: 77 GSDINFKTRDNNLSALAHYLSFNKNVEPEIVKILIDSGSSITEEDENGKNLLHMYMCNFN 136 Query: 136 --IDMAKILIDNGISLTMKDTDDYTPLHYAMLDNDTSVIYNLL 176 I++ K+LID+G++ KD D+ L+ +L + I++ L Sbjct: 137 VRINVIKLLIDSGVNFLQKDFDNNNILYSYILFHSDKKIFDYL 179 >gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lumpy skin disease virus] Length = 447 Score = 42.0 bits (97), Expect = 3e-006 Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 33/146 (22%) Query: 40 RLVMHLLRNGVDPNFYDEYMRSPIHYAVEKGNTEMVKALLEHKADPNIFDDNFDYPITNS 99 +++ L+ NG D N +Y + +HY Y +NS Sbjct: 64 KILSFLVDNGADLNTKIKYKYNALHY----------------------------YLYSNS 95 Query: 100 IIENKVEIVKILLQYGADKTM-INEFDLLHDAIKNKHID--MAKILIDNGISLTMKDTDD 156 + V+I+K L++ GAD T N ++LH + NK+ID + K L++ I L ++ DD Sbjct: 96 NVT--VDIIKFLIKKGADITKKCNGDNVLHTYLCNKNIDFKVIKFLVNKKIDLGDRNLDD 153 Query: 157 YTPLHYAMLDNDTSVIYNLLDYIFKV 182 +TP++ + + + + L +F V Sbjct: 154 HTPVNIYIRNKRNNCEIDTLKLLFLV 179 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.140 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,743 Number of Sequences: 156 Number of extensions: 2857 Number of successful extensions: 30 Number of sequences better than 1.0e-005: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 9 length of query: 361 length of database: 48,119 effective HSP length: 63 effective length of query: 298 effective length of database: 38,291 effective search space: 11410718 effective search space used: 11410718 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634898|ref|NP_039191.1| ORF FPV228 Ankyrin repeat gene family protein [Fowlpox virus] (525 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 70 1e-014 gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 70 2e-014 gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 52 3e-009 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 51 7e-009 gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S782... 48 7e-008 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 70.1 bits (170), Expect = 1e-014 Identities = 133/599 (22%), Positives = 244/599 (40%), Gaps = 108/599 (18%) Query: 20 FSVVNILEKKNIPIDYINFHPDNPLLEAV-KLTNTDMIKTLLDYGICINTRDILGNTALH 78 F++ + KK+I ID + + E + +L+ ++ +Y I N + + + Sbjct: 38 FTLCEYVSKKHIRIDVLKILFEIGCKENLHRLSYYTLLSFFKNYKIKYNFNHV--KSIIE 95 Query: 79 LIAMDYYVPHND--IKHGHH------NDYVFKMVPIINLFLRKKANINACNNLNQTPLHL 130 LI Y V ND IK + ++ F + + N N + LHL Sbjct: 96 LIT-SYGVSFNDEPIKKDSYPILFLVSNEKFNHISLYEYLENNNINFNIVRSDGYNLLHL 154 Query: 131 AAESNNT---TLLKILLYNNAKVNILDIYGN-TCLH-YAVRGR--NIESIKLLLSYNVDV 183 ES N ++LK+L+ NN VN L + N T LH Y +G N I L+ ++ Sbjct: 155 YLESCNNIKLSVLKLLIKNNVNVNGLTRFRNLTPLHIYLCKGYCLNYSVINFLIDTGSEI 214 Query: 184 NIRNFTYWYSALHEAVQIGDSKISRCIVSLLLCNKANVNTRCRLNTTPI--FYAINCIDT 241 N T YS + K+ + + + L+ A++N + TP+ F A + + T Sbjct: 215 NCGKETLLYSFF---TTCDNEKVFKSLTTKLIKKGADINQKSESGLTPLMGFVAYSDLAT 271 Query: 242 ---LKLLLENGADINATSDNDNAVIHLATENRRYDI----IKTLLDYGADVNMIGYRGKT 294 +K +L G + + N + L RRYD+ I TLL+ G ++N + ++ T Sbjct: 272 PNNIKFILSCGGNQLVVNPQSNETL-LHIYLRRYDVSLSTISTLLESGININSVNFKNYT 330 Query: 295 PLY-YATENYSYRNM-----------------------KLLLD---------HGSNPNIA 321 PL+ Y +N + ++ K +L+ + S+ Sbjct: 331 PLHVYVDKNIEHLSLDVVDYLIYKGATTERVNRYDCFAKTILEVFLEKNKFLNNSSRYFI 390 Query: 322 DHIMN------------TPLFISIKCTCIENTKMLLDSGADINHVNDNGETPISYLAPNL 369 ++I+ TPL S+ + L G+ IN +++ GET +S N Sbjct: 391 NYILKYFPINEKDLYGFTPLLSSVYVNNVNFFNYFLRLGSSINVISEIGETCVSIPIENQ 450 Query: 370 IPTPVAILVIS--HIVLLK--------------TKY----NHIKYL----PGFIKNISVI 405 + I++ S +I +K TK+ + IKYL P KN I Sbjct: 451 YKRFLKIVLDSKPNIKTIKATLRYLSDKEFNTRTKFKLMKHCIKYLFTLDPDEYKNHRFI 510 Query: 406 QNFTKFNNIKKVCEDEFRFMRSVSLSANHNLSSYICNDNLHTLVRFIKNPKIYYSINKIR 465 F+KF ++ C+ + M+S L ++ I N N R++ ++ + K Sbjct: 511 --FSKFKSVVNECQKDIITMKSTFLK-TVSVYDLIFNKNGTMHKRYLNTMEVRKYL-KSN 566 Query: 466 IYRNRLYSIIERLLNRKKLHDLVLELIKDI---GVFNKLPLDIISMILDFLSDDDLALM 521 IY R+ +I + + K D +++ + + +++ LP +I I + +S D+ ++ Sbjct: 567 IYAERVRCVINNSIEKDKKIDSIIKKVNILCKHTIWDILPEEIKDNIFNCMSLRDIRVI 625 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 69.7 bits (169), Expect = 2e-014 Identities = 109/456 (23%), Positives = 196/456 (42%), Gaps = 59/456 (12%) Query: 104 VPIINLFLRKKANINACNNLNQTPL-----HLAAESNNTTLLKILLYNNAKVNILDIYGN 158 V I+ L + N+N N TPL ++ + ++KIL+ NNA VN + G Sbjct: 47 VDIVKLLINLGGNVNGLENEYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKNSDGE 106 Query: 159 TCLHYAVRGRNIESIKLLLSYNVDVNIRNFTY---WYSALHEAVQIGDSKISRCIVSLLL 215 T L+ + I++ K +L Y + + Y+ L V+ I I+ +LL Sbjct: 107 TPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIIDIEIIKILL 166 Query: 216 CNKANVNT---RCRLNTTPIF--YAINCIDT--LKLLLENGADINATSDNDNAVI----- 263 + ++NT + + +T + Y I+ ID LKL ++NG I + + Sbjct: 167 ESGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDNGFIIKKEDKSHKKKLMEYLN 226 Query: 264 HLATENRRYDIIKTLLDY---GADVNMIGYRGKTPLYYATENYSYRNMKLLLDHGSNPNI 320 L +NRR + K +LD+ +VN + G PLYY+ + + + ++ G N N Sbjct: 227 SLLYDNRR--VKKNILDFIFTYINVNQVDELGFNPLYYSVSHNNRTIFEYIIQLGGNINC 284 Query: 321 ADHIMNTPLFISIKCTCIENTKMLLDSGADINHVNDNGETPISYLAPNLIPTPVAILVIS 380 + +T LF EN + + + I N +T ISY L Sbjct: 285 ISELGDTLLF-----KAFENRSLFIFN--SILEKKPNKKT-ISYTYYKL---------RK 327 Query: 381 HIVLLKTKYNHIKY--LPGFIKNISV-IQNFTKFNNIKKVCEDEFRFMRSVSLSANHNLS 437 H++ + N I++ + FI ++ + ++NF+ N K + F+ + S+N+ + Sbjct: 328 HLLDVGDFINQIEFDIIKKFIAHVILYVKNFSVRNRTKAFIYFD-DFIEKCTKSSNYIHN 386 Query: 438 SYICNDNLHTLV---RFI------KNPKIYYSINKIRIYRNRLYSIIER----LLNRKKL 484 +YI N+ + L ++I N K+ K+ Y N L IE+ N K+ Sbjct: 387 TYINNETIFQLCFNKKYIPISVISNNEKLLKKHTKLFYYGNILKKNIEKSKKYYENIYKV 446 Query: 485 HDLVLELIKDIGVFNKLPLDIISMILDFLSDDDLAL 520 + L +N +PL+I I++ LS +D+ + Sbjct: 447 SCCISNLCDTCSYWNTIPLEIKFKIVNNLSLNDIEM 482 Score = 42.4 bits (98), Expect = 3e-006 Identities = 55/260 (21%), Positives = 113/260 (43%), Gaps = 32/260 (12%) Query: 264 HLATENRRYDIIKTLLDYGADVNMIGYRGKTPLYYATENY-SYRNM----KLLLDHGSNP 318 +L ++ DI+K L++ G +VN + TPL N Y++M K+L+++ ++ Sbjct: 39 YLQRDSPSVDIVKLLINLGGNVNGLENEYSTPLCTILSNIKKYKHMLDVVKILIENNADV 98 Query: 319 NIADHIMNTPLFISIKCTCIENTKMLL----DSGADINHVNDNGETPIS-YLAPN--LIP 371 N + TPL+ + I+N K +L GA+ ++ +G T + Y+ N +I Sbjct: 99 NKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIID 158 Query: 372 TPVAILVISHIVLLKTKYNHIKYLPGFIKNISVIQNFTKFN------NIKKVCEDEFRFM 425 + +++ + + T N KY + + K+N NI K+ D + Sbjct: 159 IEIIKILLESGIDINTISNKEKY--------DTLDCYFKYNIDRIDANILKLFVDNGFII 210 Query: 426 RSVSLSANHNLSSYICN---DNLHTLVRFIKNPKIYYSINKI-RIYRNRLYSIIERLLNR 481 + S L Y+ + DN + Y ++N++ + N LY + N Sbjct: 211 KKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTYINVNQVDELGFNPLYYSVSH--NN 268 Query: 482 KKLHDLVLELIKDIGVFNKL 501 + + + +++L +I ++L Sbjct: 269 RTIFEYIIQLGGNINCISEL 288 >gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lumpy skin disease virus] Length = 447 Score = 52.4 bits (124), Expect = 3e-009 Identities = 87/382 (22%), Positives = 150/382 (38%), Gaps = 68/382 (17%) Query: 210 IVSLLLCNKANVNTRCRLNTTPIFYAINC-----IDTLKLLLENGADINATSDNDNAV-I 263 I+S L+ N A++NT+ + + Y + +D +K L++ GADI + DN + Sbjct: 65 ILSFLVDNGADLNTKIKYKYNALHYYLYSNSNVTVDIIKFLIKKGADITKKCNGDNVLHT 124 Query: 264 HLATENRRYDIIKTLLDYGADVNMIGYRGKTP--LYYATE--NYSYRNMKLLLDHGSNPN 319 +L +N + +IK L++ D+ TP +Y + N +KLL N Sbjct: 125 YLCNKNIDFKVIKFLVNKKIDLGDRNLDDHTPVNIYIRNKRNNCEIDTLKLLFLVDFNIY 184 Query: 320 IADHIMNTPLFISIKCTCIENTKML-----LDSGADINHVNDNGETPISY---------- 364 + I + L + + K L + IN V+ NG PI Y Sbjct: 185 NKEDIFLSALDVFLDYLKSYTRKSLDIVNYILENISINSVDSNGFNPILYATVSGQKVFF 244 Query: 365 -----LAPNLIPTPVAILVISHIVLLKTKYNHIKYLPGFIKNISVIQNFT---------- 409 L ++ T + L+ Y K N+ I+N Sbjct: 245 DYFLKLGCSINITTSCGETCGSLSLMDCDYCTFKTFLSKKPNLQTIENTLSCLSNYLEDI 304 Query: 410 -----KFNNIKKVCEDEFRF-------MRSVSLSANHNLSSY------ICNDNLHTLVRF 451 KF K++ + F S+ L +S Y +C+D + + Sbjct: 305 YYCDLKFKMFKELLLEAFMLDSEFYNRHESIKLYFPKTISLYKEPIVQMCSDKIGDKSVY 364 Query: 452 ---IKNPKIYYSINK-IRIYRNRLY--SIIERLLNRKKLHDL-VLELIKDIGV---FNKL 501 KN I Y N I Y N Y ++I + + K+ ++++IK I + +N L Sbjct: 365 DIIFKNSDIRYCYNDYINKYTNLKYYGNLIRKCILASKMRKKNIVKIIKTINIAPYWNTL 424 Query: 502 PLDIISMILDFLSDDDLALMAI 523 P +I I++FLSD+++ L+AI Sbjct: 425 PTEIKMYIINFLSDNEIKLLAI 446 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.140 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,603 Number of Sequences: 156 Number of extensions: 4447 Number of successful extensions: 75 Number of sequences better than 1.0e-005: 5 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 24 length of query: 525 length of database: 48,119 effective HSP length: 66 effective length of query: 459 effective length of database: 37,823 effective search space: 17360757 effective search space used: 17360757 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 94 (40.8 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634899|ref|NP_039192.1| ORF FPV229 hypothetical protein [Fowlpox virus] (180 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.315 0.133 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,454 Number of Sequences: 156 Number of extensions: 1284 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 180 length of database: 48,119 effective HSP length: 57 effective length of query: 123 effective length of database: 39,227 effective search space: 4824921 effective search space used: 4824921 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634900|ref|NP_039193.1| ORF FPV230 Ankyrin repeat gene family protein [Fowlpox virus] (188 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 42 2e-006 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 41.6 bits (96), Expect = 2e-006 Identities = 45/189 (23%), Positives = 72/189 (37%), Gaps = 30/189 (15%) Query: 2 ENELKLYYAVSSQNENLVIQLLNKGYNPNAINRFKYMIPLH----KAVECRNVDITKHLL 57 E L +Y + + + LL G N N++N FK PLH K +E ++D+ +L+ Sbjct: 294 ETLLHIYLRRYDVSLSTISTLLESGININSVN-FKNYTPLHVYVDKNIEHLSLDVVDYLI 352 Query: 58 SNGADANVRDFLGLGVFHILSMFSSLPELKDILHNTEGTFVLCKYNYAPLEEDYEVKTLE 117 GA + IL +F E L+N+ F+ Y P Sbjct: 353 YKGATTERVNRYDCFAKTILEVFL---EKNKFLNNSSRYFINYILKYFP----------- 398 Query: 118 IARMLFISKANINMTSKLGSTPLHIASKYNNKTMVKFFLERGADINILDSNNNTPLIYAV 177 IN G TPL + NN +FL G+ IN++ T + + Sbjct: 399 -----------INEKDLYGFTPLLSSVYVNNVNFFNYFLRLGSSINVISEIGETCVSIPI 447 Query: 178 CSVIRLYLK 186 + + +LK Sbjct: 448 ENQYKRFLK 456 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,446 Number of Sequences: 156 Number of extensions: 1338 Number of successful extensions: 19 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 4 length of query: 188 length of database: 48,119 effective HSP length: 57 effective length of query: 131 effective length of database: 39,227 effective search space: 5138737 effective search space used: 5138737 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634901|ref|NP_039194.1| ORF FPV231 Ankyrin repeat gene family protein [Fowlpox virus] (256 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 48 2e-008 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 41 3e-006 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 48.1 bits (113), Expect = 2e-008 Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 37/214 (17%) Query: 7 ISKMLLDYGARIDSRNKEECLPL----NHAIATNNKELTSLFLARGADTNIVDKYNRSVL 62 + K+L++ A ++ +N + PL ++ NNKE+ + GA+T ++ K ++L Sbjct: 87 VVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTML 146 Query: 63 HKAIGNN----NITSVKLLLNHGIDYN-LRDNHGYTAL----HYAITLQNREITDMLLSS 113 + N +I +K+LL GID N + + Y L Y I + I + + + Sbjct: 147 QVYVKTNHHIIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDN 206 Query: 114 G---ADPNIMNNEKHTPLYHALLYRS----SNVESLILHGADINIVDDTGKTPLSNTYID 166 G + + +K ++LLY + N+ I ++N VD+ G PL Y Sbjct: 207 GFIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTYINVNQVDELGFNPL---YYS 263 Query: 167 IIDNKNIEVIVSQFTILEYIAPDDIKNQLGYKIN 200 + N TI EYI QLG IN Sbjct: 264 VSHNNR--------TIFEYII------QLGGNIN 283 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 41.2 bits (95), Expect = 3e-006 Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 30/196 (15%) Query: 6 TISKMLLDYGARI-DSRNKEECLPLNHAIAT---NNKELTSLFLARGADTNIVDKYNRSV 61 +I +++ YG D K++ P+ ++ N+ L + NIV ++ Sbjct: 92 SIIELITSYGVSFNDEPIKKDSYPILFLVSNEKFNHISLYEYLENNNINFNIVRSDGYNL 151 Query: 62 LH---KAIGNNNITSVKLLLNHGIDYN-------LRDNHGYTALHYAITLQNREITDMLL 111 LH ++ N ++ +KLL+ + ++ N L H Y Y + N + + L+ Sbjct: 152 LHLYLESCNNIKLSVLKLLIKNNVNVNGLTRFRNLTPLHIYLCKGYCL---NYSVINFLI 208 Query: 112 SSGADPNIMNNEKHTPLY-------HALLYRSSNVESLILHGADINIVDDTGKTPLSN-- 162 +G++ +N K T LY + +++S + LI GADIN ++G TPL Sbjct: 209 DTGSE---INCGKETLLYSFFTTCDNEKVFKSLTTK-LIKKGADINQKSESGLTPLMGFV 264 Query: 163 TYIDIIDNKNIEVIVS 178 Y D+ NI+ I+S Sbjct: 265 AYSDLATPNNIKFILS 280 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.317 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,119 Number of Sequences: 156 Number of extensions: 2152 Number of successful extensions: 28 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 9 length of query: 256 length of database: 48,119 effective HSP length: 60 effective length of query: 196 effective length of database: 38,759 effective search space: 7596764 effective search space used: 7596764 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634902|ref|NP_039195.1| ORF FPV232 Ankyrin repeat gene family protein [Fowlpox virus] (482 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 61 6e-012 gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 57 8e-011 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 46 3e-007 gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 43 2e-006 gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S782... 42 4e-006 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 61.2 bits (147), Expect = 6e-012 Identities = 110/494 (22%), Positives = 201/494 (40%), Gaps = 72/494 (14%) Query: 41 LHQAVEARN---LEVVEALLERGHNVNE-TDHRYLTPLHIICSHPNKIGMKEV-IAEKTK 95 LH +E+ N L V++ L++ NVN T R LTPLHI + + T Sbjct: 152 LHLYLESCNNIKLSVLKLLIKNNVNVNGLTRFRNLTPLHIYLCKGYCLNYSVINFLIDTG 211 Query: 96 RDLSSYEERAISE---ACYNNDINIFKMLLLNDGNRTIDDVQ---------LCTIDYDDS 143 +++ +E + C N +FK L + D Q + + Y D Sbjct: 212 SEINCGKETLLYSFFTTCDNE--KVFKSLTTKLIKKGADINQKSESGLTPLMGFVAYSDL 269 Query: 144 IDTKIIKLLLAYGADTKIKTEDKLKTALHYASTNKNYKLAEY--LLIYGAEVNSPDIGNN 201 IK +L+ G + + +T LH + L+ LL G +NS + N Sbjct: 270 ATPNNIKFILSCGGNQLVVNPQSNETLLHIYLRRYDVSLSTISTLLESGININSVNFKNY 329 Query: 202 SPMH----EAVRHRNEDVVKILLQYGSNTDHMN--SCGTTPL---HISVGRVLNRNNYSI 252 +P+H + + H + DVV L+ G+ T+ +N C + + + LN ++ Sbjct: 330 TPLHVYVDKNIEHLSLDVVDYLIYKGATTERVNRYDCFAKTILEVFLEKNKFLNNSSRYF 389 Query: 253 LKILLEHGTSVNIQSSILGFTALHLSIH--SEDKLNLLLEYGADPNILNFEKETPLSMAV 310 + +L++ +N + + GFT L S++ + + N L G+ N+++ ET +S+ + Sbjct: 390 INYILKY-FPIN-EKDLYGFTPLLSSVYVNNVNFFNYFLRLGSSINVISEIGETCVSIPI 447 Query: 311 K----------------------VTRY--DINIYNRLIYNICLRAFKYPFIKTTEGYIKN 346 + RY D R + + KY F + Y KN Sbjct: 448 ENQYKRFLKIVLDSKPNIKTIKATLRYLSDKEFNTRTKFKLMKHCIKYLFTLDPDEY-KN 506 Query: 347 MTCINGYPKCKSIKDACEYEIKNLESIKLSPRFSMADFLKDDNSLMMDKIINNDLIDYYY 406 I + K KS+ + C+ +I ++S L S+ D + + N M + +N + Y Sbjct: 507 HRFI--FSKFKSVVNECQKDIITMKSTFLK-TVSVYDLIFNKNGTMHKRYLNTMEVRKYL 563 Query: 407 SFMDSFPIYGNIVKKSIDTAKDRYLLIQGAIRSMDNITFPSQRVSWYNMPLEIKHDI--- 463 IY V+ I+ + ++ I I+ ++ + + W +P EIK +I Sbjct: 564 ----KSNIYAERVRCVINNSIEKDKKIDSIIKKVNIL---CKHTIWDILPEEIKDNIFNC 616 Query: 464 MYLLDDKSLCNLIV 477 M L D + + ++ V Sbjct: 617 MSLRDIRVIFHMFV 630 Score = 44.7 bits (104), Expect = 6e-007 Identities = 55/237 (23%), Positives = 106/237 (44%), Gaps = 28/237 (11%) Query: 105 AISEACYNNDINIFKMLLLNDGNRTIDDVQLCTIDYDDSIDTKIIKLLLAYGADTKIKTE 164 ++ E NN+IN ++ +DG + ++ ++I ++KLL+ + T Sbjct: 129 SLYEYLENNNINF--NIVRSDGYNLLH----LYLESCNNIKLSVLKLLIKNNVNVNGLTR 182 Query: 165 DKLKTALHYASTNK---NYKLAEYLLIYGAEVNSPDIGNNSPMHEAVRH-RNEDVVKIL- 219 + T LH NY + +L+ G+E+N G + ++ NE V K L Sbjct: 183 FRNLTPLHIYLCKGYCLNYSVINFLIDTGSEINC---GKETLLYSFFTTCDNEKVFKSLT 239 Query: 220 ---LQYGSNTDHMNSCGTTPL--HISVGRVLNRNNYSILKILLEHGTSVNIQSSILGFTA 274 ++ G++ + + G TPL ++ + NN +K +L G + + + T Sbjct: 240 TKLIKKGADINQKSESGLTPLMGFVAYSDLATPNN---IKFILSCGGNQLVVNPQSNETL 296 Query: 275 LHLSIHSED----KLNLLLEYGADPNILNFEKETPLSMAV--KVTRYDINIYNRLIY 325 LH+ + D ++ LLE G + N +NF+ TPL + V + +++ + LIY Sbjct: 297 LHIYLRRYDVSLSTISTLLESGININSVNFKNYTPLHVYVDKNIEHLSLDVVDYLIY 353 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 57.4 bits (137), Expect = 8e-011 Identities = 102/438 (23%), Positives = 171/438 (38%), Gaps = 73/438 (16%) Query: 50 LEVVEALLERGHNVNETDHRYLTPLHIICSHPNKIGMKEVI-------AEKTKRDLSSYE 102 L+VV+ L+E +VN+ + TPL+ + S+ KE++ AE T Y Sbjct: 85 LDVVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYT 144 Query: 103 ERAISEACYNN--DINIFKMLLLND------GNRTIDDVQLCTIDYD-DSIDTKIIKLLL 153 + ++ DI I K+LL + N+ D C Y+ D ID I+KL + Sbjct: 145 MLQVYVKTNHHIIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFV 204 Query: 154 AYGADTKIKTEDKLKTALHYAST----NKNYK--LAEYLLIYGAEVNSPDIGNNSPMHEA 207 G K + + K + Y ++ N+ K + +++ Y VN D +P++ + Sbjct: 205 DNGFIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTY-INVNQVDELGFNPLYYS 263 Query: 208 VRHRNEDVVKILLQYGSNTDHMNSCGTTPLHISVGRVLNRNNYSILKILLEHGTSVNIQS 267 V H N + + ++Q G N + ++ G T L + + I +LE + Sbjct: 264 VSHNNRTIFEYIIQLGGNINCISELGDTLLF----KAFENRSLFIFNSILEKKPN----K 315 Query: 268 SILGFTALHLSIHSEDKLNLLLEYGADPNILNFEKETPLSMAVKVTRYDINIYNRLIYNI 327 + +T L H LL+ G N + F+ V + + ++ NR Sbjct: 316 KTISYTYYKLRKH-------LLDVGDFINQIEFDIIKKFIAHVILYVKNFSVRNR----- 363 Query: 328 CLRAFKYPFIKTTEGYIKNMTCI-NGYPKCKSIKDACEYEIKNLESIKLSPRFSMADFLK 386 +AF Y F E K+ I N Y ++I C N + I +S + LK Sbjct: 364 -TKAFIY-FDDFIEKCTKSSNYIHNTYINNETIFQLC----FNKKYIPISVISNNEKLLK 417 Query: 387 DDNSLMMDKIINNDLIDYYYSFMDSFPIYGNIVKKSIDTAKDRYLLIQGAIRSMDNITFP 446 L YGNI+KK+I+ +K Y I + N+ Sbjct: 418 KHTKLF---------------------YYGNILKKNIEKSKKYYENIYKVSCCISNLCDT 456 Query: 447 SQRVSWYNMPLEIKHDIM 464 W +PLEIK I+ Sbjct: 457 CS--YWNTIPLEIKFKIV 472 Score = 48.1 bits (113), Expect = 5e-008 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 15/159 (9%) Query: 182 LAEYLLIYGAEVNSPDIGNNSPMHEAVRHRNE-----DVVKILLQYGSNTDHMNSCGTTP 236 + + L+ G VN + ++P+ + + + DVVKIL++ ++ + NS G TP Sbjct: 49 IVKLLINLGGNVNGLENEYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKNSDGETP 108 Query: 237 LHISVGRVLNRNNYSILKILLEHGTSVNIQSSILGFTALHLSIHSE------DKLNLLLE 290 L+ + +NN IL +++ G + S G+T L + + + + + +LLE Sbjct: 109 LYCLLSNGYIKNNKEILLYMIQMGAETTLLSKD-GYTMLQVYVKTNHHIIDIEIIKILLE 167 Query: 291 YGADPN-ILNFEKETPLSMAVK--VTRYDINIYNRLIYN 326 G D N I N EK L K + R D NI + N Sbjct: 168 SGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDN 206 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 45.8 bits (107), Expect = 3e-007 Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 33/241 (13%) Query: 115 INIFKMLLLNDGN---RTIDDVQLCTIDYDDSIDTKIIK----LLLAYGADTKIKTEDKL 167 I+I ++LL N + R+ D + ++ + +D+ IK LLL +GAD +K + + Sbjct: 51 IDILRLLLENGADVNYRSYYDTSITSVIRNYELDSNTIKQIIILLLKFGADINLKPFNGV 110 Query: 168 KTALH--YASTNKNYKLAEYLLIYGAEVNSPDIGNNS----PMHEAVRHRNEDVVKILLQ 221 T + Y N + ++LL G V + I + M+ DV+KILL Sbjct: 111 YTIMPFIYNFHINNCNMFKFLLSKGIYVKNDIIDSRGFNLFHMYFESFSVKIDVIKILLS 170 Query: 222 YGSNTDHMNSCGTTPLHISVGRVLNRNNYSILKILLEHGTSVNIQSSILGFTALHLSIHS 281 + + G TP++I ++ + ++K L+ G VNI+++ G +L + Sbjct: 171 FNVGLFEKSFKGLTPMNIYFDHFIDVISLKVIKYLISKG--VNIETNNNGSKSLLETFLR 228 Query: 282 EDK---------LNLLLEYGADPNILNFEKETPLSMAVKVTRYDINIYNRL------IYN 326 +K LN +L+Y N ++ + P+ ++ K YD +N L IYN Sbjct: 229 SNKILSRKCFKVLNFILKY-VKLNKVDEKGLNPILISAKADNYD--AFNHLLKLGDDIYN 285 Query: 327 I 327 + Sbjct: 286 V 286 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,227 Number of Sequences: 156 Number of extensions: 3645 Number of successful extensions: 46 Number of sequences better than 1.0e-005: 5 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 16 length of query: 482 length of database: 48,119 effective HSP length: 65 effective length of query: 417 effective length of database: 37,979 effective search space: 15837243 effective search space used: 15837243 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 94 (40.8 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634903|ref|NP_039196.1| ORF FPV233 Ankyrin repeat gene family protein [Fowlpox virus] (512 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 48 7e-008 gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 45 4e-007 gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 45 4e-007 gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S782... 45 5e-007 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 42 5e-006 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 47.8 bits (112), Expect = 7e-008 Identities = 41/148 (27%), Positives = 70/148 (46%), Gaps = 16/148 (10%) Query: 204 KTNKSPLYYSIESDNPDITMLLIDKFIFNNTDPILSHAIKHYRKPILHALIENGASINAR 263 K N LY +E++N + ++ D + N + + + + +L LI+N ++N Sbjct: 124 KFNHISLYEYLENNNINFNIVRSDGY---NLLHLYLESCNNIKLSVLKLLIKNNVNVNGL 180 Query: 264 DKYGN-TPLHYAV--SYCKDIDVIKLLLERGVDVNAKSYIRNLTPLHSSYLK--SPRVLK 318 ++ N TPLH + YC + VI L++ G ++N T L+S + + +V K Sbjct: 181 TRFRNLTPLHIYLCKGYCLNYSVINFLIDTGSEINCGKE----TLLYSFFTTCDNEKVFK 236 Query: 319 LL----LQYGADINSLDSYSLTPLTSVV 342 L ++ GADIN LTPL V Sbjct: 237 SLTTKLIKKGADINQKSESGLTPLMGFV 264 Score = 43.1 bits (100), Expect = 2e-006 Identities = 47/195 (24%), Positives = 82/195 (41%), Gaps = 27/195 (13%) Query: 159 LFSYGADINMVDRHGNSPL-HYATENPDQRLTRL--LLSKGANPNILNKTNKSPLYYSIE 215 + S G + +V+ N L H D L+ + LL G N N +N N +PL+ ++ Sbjct: 278 ILSCGGNQLVVNPQSNETLLHIYLRRYDVSLSTISTLLESGININSVNFKNYTPLHVYVD 337 Query: 216 SDNPDITMLLIDKFIFNNTDPILSHAIKHYRKPILHALIE-----NGAS----------- 259 + +++ ++D I+ + + K IL +E N +S Sbjct: 338 KNIEHLSLDVVDYLIYKGATTERVNRYDCFAKTILEVFLEKNKFLNNSSRYFINYILKYF 397 Query: 260 -INARDKYGNTPLHYAVSYCKDIDVIKLLLERGVDVNAKSYIRNL---TPLHSSYLKSPR 315 IN +D YG TPL +V Y +++ L G +N S I P+ + Y R Sbjct: 398 PINEKDLYGFTPLLSSV-YVNNVNFFNYFLRLGSSINVISEIGETCVSIPIENQY---KR 453 Query: 316 VLKLLLQYGADINSL 330 LK++L +I ++ Sbjct: 454 FLKIVLDSKPNIKTI 468 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 45.4 bits (106), Expect = 4e-007 Identities = 41/149 (27%), Positives = 66/149 (43%), Gaps = 32/149 (21%) Query: 158 LLFSYGADINMVDRHGNSPLHYATENPDQR-----LTRLLLSKGANPNILNKTNKSPLYY 212 LL + G ++N ++ ++PL N + + ++L+ A+ N N ++PLY Sbjct: 52 LLINLGGNVNGLENEYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKNSDGETPLY- 110 Query: 213 SIESDNPDITMLLIDKFIFNNTDPILSHAIKHYRKPILHALIENGASINARDKYGNTPLH 272 LL + +I NN K IL +I+ GA K G T L Sbjct: 111 ----------CLLSNGYIKNN-------------KEILLYMIQMGAETTLLSKDGYTMLQ 147 Query: 273 YAVS---YCKDIDVIKLLLERGVDVNAKS 298 V + DI++IK+LLE G+D+N S Sbjct: 148 VYVKTNHHIIDIEIIKILLESGIDINTIS 176 Score = 42.4 bits (98), Expect = 3e-006 Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 28/166 (16%) Query: 190 RLLLSKGANPN-ILNKTNKSPLYYSIESDNPDITMLLIDKFIFNNTD-----------PI 237 +L + K +PN I+N+ + Y +S + DI LLI+ + N + I Sbjct: 17 KLSIIKSCDPNEIVNEYSLFQKYLQRDSPSVDIVKLLIN--LGGNVNGLENEYSTPLCTI 74 Query: 238 LSHAIKHYRK--PILHALIENGASINARDKYGNTPLHYAVS--YCKDI-DVIKLLLERGV 292 LS+ IK Y+ ++ LIEN A +N ++ G TPL+ +S Y K+ +++ +++ G Sbjct: 75 LSN-IKKYKHMLDVVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGA 133 Query: 293 DVNAKSYIRNLTPLHSSYLKSPR------VLKLLLQYGADINSLDS 332 + S ++ + Y+K+ ++K+LL+ G DIN++ + Sbjct: 134 ETTLLS--KDGYTMLQVYVKTNHHIIDIEIIKILLESGIDINTISN 177 >gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lumpy skin disease virus] Length = 447 Score = 45.4 bits (106), Expect = 4e-007 Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 16/123 (13%) Query: 228 KFIFNNT------DPILSHAIKHYRKPILHALIENGASINARDKYGNTPLHYAVSYCKD- 280 K I+NN + +S +++ Y+K IL L++NGA +N + KY LHY + + Sbjct: 39 KGIYNNLLLTVLGNKSISLSVQKYKK-ILSFLVDNGADLNTKIKYKYNALHYYLYSNSNV 97 Query: 281 -IDVIKLLLERGVDVNAKSYIRNLTPLHSSYLKSP----RVLKLLLQYGADINSLDSYSL 335 +D+IK L+++G D+ K N+ LH +YL + +V+K L+ D+ + Sbjct: 98 TVDIIKFLIKKGADITKKCNGDNV--LH-TYLCNKNIDFKVIKFLVNKKIDLGDRNLDDH 154 Query: 336 TPL 338 TP+ Sbjct: 155 TPV 157 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,536 Number of Sequences: 156 Number of extensions: 3425 Number of successful extensions: 50 Number of sequences better than 1.0e-005: 5 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 21 length of query: 512 length of database: 48,119 effective HSP length: 66 effective length of query: 446 effective length of database: 37,823 effective search space: 16869058 effective search space used: 16869058 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 94 (40.8 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634904|ref|NP_039197.1| ORF FPV234 Ankyrin repeat gene family protein [Fowlpox virus] (428 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 50 2e-008 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 46 2e-007 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 46 2e-007 gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 42 3e-006 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 49.7 bits (117), Expect = 2e-008 Identities = 100/440 (22%), Positives = 166/440 (37%), Gaps = 97/440 (22%) Query: 26 ILENGADPNVR-----VPYQYSHLHNAIEKKNGSAVSLLLKHGADPNI---SGFFTPPLH 77 ++EN AD N + P Y L N K N + +++ GA+ + G+ ++ Sbjct: 91 LIENNADVNKKNSDGETPL-YCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVY 149 Query: 78 KAIKKGCVDIA--RSLLEYG----AIVNLEHYCLKPIHIAAN--RTESKIVKLLIEYGAD 129 +DI + LLE G I N E Y + N R ++ I+KL ++ G Sbjct: 150 VKTNHHIIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDNGFI 209 Query: 130 INSEDGANGKYPIHYAMKV-YDPFRLKIIKVLLDH---GADINKQSVLTNTSPLYETRFI 185 I ED ++ K + Y + YD R+K K +LD ++N+ L Y Sbjct: 210 IKKEDKSHKKKLMEYLNSLLYDNRRVK--KNILDFIFTYINVNQVDELGFNPLYYSVSHN 267 Query: 186 TDDLLDYIISRGANINIKGRMGRNILHEIILRNGYNDFSNILVLIDHGADINALDDEGNT 245 + +YII G NIN +G +L + F++I L+ + N Sbjct: 268 NRTIFEYIIQLGGNINCISELGDTLLFKAFENRSLFIFNSI------------LEKKPNK 315 Query: 246 PFMLHTXXXXXXXXXXXXVSLYYLSYKARISNGMEKNMKIINKCEYLSSCINIIKEEIER 305 + +T YY K + G IN+ E+ +IIK+ I Sbjct: 316 KTISYT---------------YYKLRKHLLDVG-----DFINQIEF-----DIIKKFIAH 350 Query: 306 MKTFKIYDGNXXXXXXXXXXXXNEDNIAIVYRLSDTLLEKMNIIKTIFPNCFR------- 358 + +Y N +D I + S+ + +TIF CF Sbjct: 351 V---ILYVKNFSVRNRTKAFIYFDDFIEKCTKSSNYIHNTYINNETIFQLCFNKKYIPIS 407 Query: 359 IIQNILKMLTKRYEMLLEINNIMNANLVNTK----------------------WYTLPIE 396 +I N K+L K++ L NI+ N+ +K W T+P+E Sbjct: 408 VISNNEKLL-KKHTKLFYYGNILKKNIEKSKKYYENIYKVSCCISNLCDTCSYWNTIPLE 466 Query: 397 IRWMILTKLD----DMILRN 412 I++ I+ L +M L+N Sbjct: 467 IKFKIVNNLSLNDIEMFLKN 486 Score = 47.8 bits (112), Expect = 6e-008 Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 14/153 (9%) Query: 100 LEHYCLKPIHIAANRTESKIVKLLIEYGADINSEDGANGKY--PIHYAMKVYDPFR--LK 155 + Y L ++ + IVKLLI G ++N G +Y P+ + ++ L Sbjct: 30 VNEYSLFQKYLQRDSPSVDIVKLLINLGGNVN---GLENEYSTPLCTILSNIKKYKHMLD 86 Query: 156 IIKVLLDHGADINKQSVLTNTSPLY---ETRFITD--DLLDYIISRGANINIKGRMGRNI 210 ++K+L+++ AD+NK++ +PLY +I + ++L Y+I GA + + G + Sbjct: 87 VVKILIENNADVNKKN-SDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTM 145 Query: 211 LHEIILRNGY-NDFSNILVLIDHGADINALDDE 242 L + N + D I +L++ G DIN + ++ Sbjct: 146 LQVYVKTNHHIIDIEIIKILLESGIDINTISNK 178 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 46.2 bits (108), Expect = 2e-007 Identities = 64/268 (23%), Positives = 117/268 (42%), Gaps = 38/268 (14%) Query: 5 NKDDILICEAIENYDSESLRNILENGADPNVRVPY---------QYSHLHNAIEKKNGSA 55 N+ +L+ ++ + LR +LENGAD N R Y Y N I++ Sbjct: 36 NESILLLYLKRKDVSIDILRLLLENGADVNYRSYYDTSITSVIRNYELDSNTIKQ----I 91 Query: 56 VSLLLKHGADPNISGF-----FTPPLHKAIKKGCVDIARSLLEYGA-----IVNLEHYCL 105 + LLLK GAD N+ F P ++ C ++ + LL G I++ + L Sbjct: 92 IILLLKFGADINLKPFNGVYTIMPFIYNFHINNC-NMFKFLLSKGIYVKNDIIDSRGFNL 150 Query: 106 KPIHIAANRTESKIVKLLIEYGADINSEDGANGKYPIH-YAMKVYDPFRLKIIKVLLDHG 164 ++ + + ++K+L+ + + E G P++ Y D LK+IK L+ G Sbjct: 151 FHMYFESFSVKIDVIKILLSFNVGL-FEKSFKGLTPMNIYFDHFIDVISLKVIKYLISKG 209 Query: 165 ADINKQSVLTNTSPLYETRFITDDLLDYIISRGANINIK----GRMGRNILHEIIL---R 217 +I + + L ET ++ +L + N +K ++ L+ I++ Sbjct: 210 VNIETNN--NGSKSLLETFLRSNKILSRKCFKVLNFILKYVKLNKVDEKGLNPILISAKA 267 Query: 218 NGYNDFSNILVLIDHGADINALDDEGNT 245 + Y+ F+++L L G DI + +GNT Sbjct: 268 DNYDAFNHLLKL---GDDIYNVSKKGNT 292 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 45.8 bits (107), Expect = 2e-007 Identities = 66/259 (25%), Positives = 106/259 (40%), Gaps = 56/259 (21%) Query: 9 ILICEAIENYDSESLRNILENG-ADPNVRVPYQYSHLHNAIEKKNG---SAVSLLLKHGA 64 IL + E ++ SL LEN + N+ Y+ LH +E N S + LL+K+ Sbjct: 116 ILFLVSNEKFNHISLYEYLENNNINFNIVRSDGYNLLHLYLESCNNIKLSVLKLLIKNNV 175 Query: 65 DPNISGFFT--PPLHKAIKKGCVDIARSLLEYGAIVNLEHYCLKPIHIAANRTESKIVKL 122 + N F PLH + KG YCL ++ Sbjct: 176 NVNGLTRFRNLTPLHIYLCKG-------------------YCLN----------YSVINF 206 Query: 123 LIEYGADINSEDGANGKYPIHYAM-------KVYDPFRLKIIKVLLDHGADINKQSVLTN 175 LI+ G++IN GK + Y+ KV+ K+IK GADIN++S + Sbjct: 207 LIDTGSEINC-----GKETLLYSFFTTCDNEKVFKSLTTKLIK----KGADINQKSE-SG 256 Query: 176 TSPLYE----TRFITDDLLDYIISRGANINIKGRMGRNILHEIILRNGYNDFSNILVLID 231 +PL + T + + +I+S G N + L I LR S I L++ Sbjct: 257 LTPLMGFVAYSDLATPNNIKFILSCGGNQLVVNPQSNETLLHIYLRRYDVSLSTISTLLE 316 Query: 232 HGADINALDDEGNTPFMLH 250 G +IN+++ + TP ++ Sbjct: 317 SGININSVNFKNYTPLHVY 335 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.139 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,561 Number of Sequences: 156 Number of extensions: 2820 Number of successful extensions: 44 Number of sequences better than 1.0e-005: 4 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 16 length of query: 428 length of database: 48,119 effective HSP length: 64 effective length of query: 364 effective length of database: 38,135 effective search space: 13881140 effective search space used: 13881140 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634905|ref|NP_039198.1| ORF FPV235 C-type lectin gene family protein [Fowlpox virus] (143 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.329 0.145 0.497 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,828 Number of Sequences: 156 Number of extensions: 682 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 143 length of database: 48,119 effective HSP length: 55 effective length of query: 88 effective length of database: 39,539 effective search space: 3479432 effective search space used: 3479432 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634906|ref|NP_039199.1| ORF FPV236 N1R/p28 gene family protein [Fowlpox virus] (280 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host r... 63 8e-013 >gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host range protein [lumpy skin disease virus] Length = 240 Score = 63.2 bits (152), Expect = 8e-013 Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 13/187 (6%) Query: 27 FMSMKLLDVEVVIMRSNGFVNITRLCNLEGKDFNDWKQLESSRRLL-NTLKDNN-KLHDP 84 F+ + V+V+I+ +N +VNIT+LC GK F++W L+SS +++ N K+ + ++ + Sbjct: 9 FILLNYEKVKVIIVLANNYVNITKLCKPMGKSFHNWWNLKSSYQIICNIAKEEDIEVENL 68 Query: 85 IINI---RHTRIKINGEYVSQLLLDYVIPWISPYVATRVSILMRYYRRCVALNIETEKDI 141 N+ + T+ ++ G+Y+ LL Y++ WIS ++ ++ + + NI T I Sbjct: 69 SFNVWKGQETK-EVYGKYIHPKLLVYILNWISEEYCAKILSIINEFNSKILNNITTNTKI 127 Query: 142 DH-SQELQNQISKIDEVYDRSIKDISN--RFKEIETSYYSKLSTYLLTKAER----VLEK 194 + L + S + ++++ N +F + SK Y L E+ LEK Sbjct: 128 NKIYTRLPKEESMFNAIFNKENSKSKNYKKFLINIPTILSKYEKYFLESEEKECAVCLEK 187 Query: 195 DYSMEQD 201 Y E D Sbjct: 188 VYDKEYD 194 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,474 Number of Sequences: 156 Number of extensions: 1733 Number of successful extensions: 6 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 1 length of query: 280 length of database: 48,119 effective HSP length: 61 effective length of query: 219 effective length of database: 38,603 effective search space: 8454057 effective search space used: 8454057 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634907|ref|NP_039200.1| ORF FPV237 hypothetical protein [Fowlpox virus] (67 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.330 0.143 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9206 Number of Sequences: 156 Number of extensions: 372 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 67 length of database: 48,119 effective HSP length: 43 effective length of query: 24 effective length of database: 41,411 effective search space: 993864 effective search space used: 993864 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634909|ref|NP_039201.1| ORF FPV239 C-type lectin gene family protein [Fowlpox virus] (163 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.142 0.470 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,539 Number of Sequences: 156 Number of extensions: 918 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 163 length of database: 48,119 effective HSP length: 56 effective length of query: 107 effective length of database: 39,383 effective search space: 4213981 effective search space used: 4213981 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634908|ref|NP_039202.1| ORF FPV238 hypothetical protein [Fowlpox virus] (61 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.332 0.145 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4769 Number of Sequences: 156 Number of extensions: 99 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 61 length of database: 48,119 effective HSP length: 37 effective length of query: 24 effective length of database: 42,347 effective search space: 1016328 effective search space used: 1016328 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634910|ref|NP_039203.1| ORF FPV240 Ankyrin repeat gene family protein [Fowlpox virus] (410 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 53 2e-009 gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 42 4e-006 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 52.8 bits (125), Expect = 2e-009 Identities = 87/356 (24%), Positives = 155/356 (43%), Gaps = 42/356 (11%) Query: 68 ESELHEAVEEGDVV--KVEELLDSGKFINDVIYKKGNTPLHLATISKN-----LDMMRLL 120 E+ LH + DV + LL+SG IN V +K TPLH+ + KN LD++ L Sbjct: 294 ETLLHIYLRRYDVSLSTISTLLESGININSVNFKN-YTPLHVY-VDKNIEHLSLDVVDYL 351 Query: 121 IARGADTDVPNT-DRFTPLHLAVMSKDIKG--------IELLLDHRACTNIEDCYGCTPL 171 I +GA T+ N D F L V + K I +L + N +D YG TPL Sbjct: 352 IYKGATTERVNRYDCFAKTILEVFLEKNKFLNNSSRYFINYILKYFPI-NEKDLYGFTPL 410 Query: 172 IIAMSKGDTEVCRMLLDSGANIDYFSKRPCVTAMCYAIQNNKIDMVSMFLKRGADSNIVF 231 + ++ + L G++I+ S+ + C +I + FLK DS Sbjct: 411 LSSVYVNNVNFFNYFLRLGSSINVISE---IGETCVSIPIE--NQYKRFLKIVLDSKPNI 465 Query: 232 TVMNEEHTTLEMICNMDTNPESESVDMLIADIALRQYTNTISSDKGFSRNMTVINSKSRL 291 + TL + + + N ++ M +Y T+ D+ +N I SK Sbjct: 466 KTIK---ATLRYLSDKEFNTRTKFKLMK----HCIKYLFTLDPDE--YKNHRFIFSK--F 514 Query: 292 KDVFEKCKIELRRINSESIRTYNILDLCLKPSKNLDENIL-ARHSRKILGLYDNAIFYKY 350 K V +C+ ++ + S ++T ++ DL + + + L RK Y + Y Sbjct: 515 KSVVNECQKDIITMKSTFLKTVSVYDLIFNKNGTMHKRYLNTMEVRK----YLKSNIYAE 570 Query: 351 LLKELADTASQRAEAIESAMRVIDEKITGDETKWNWLPHEIKYNILEYIGNKELDI 406 ++ + + + ++ + I+S ++ ++ I T W+ LP EIK NI + +++ + Sbjct: 571 RVRCVINNSIEKDKKIDSIIKKVN--ILCKHTIWDILPEEIKDNIFNCMSLRDIRV 624 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 41.6 bits (96), Expect = 4e-006 Identities = 52/248 (20%), Positives = 103/248 (40%), Gaps = 17/248 (6%) Query: 161 NIEDCYGCTPLIIAMSKGDTEVCRMLLDSGANIDYFSKRPCVTAMCYAIQNNKIDMVSMF 220 N D G PL ++S + + ++ G NI+ S+ T + A +N + + + Sbjct: 250 NQVDELGFNPLYYSVSHNNRTIFEYIIQLGGNINCISELGD-TLLFKAFENRSLFIFNSI 308 Query: 221 L-KRGADSNIVFTVMNEEHTTLEMICNMDTNPESESVDMLIADIALRQYTNTISSDKGFS 279 L K+ I +T L++ + ++ + DI + + I K FS Sbjct: 309 LEKKPNKKTISYTYYKLRKHLLDV---------GDFINQIEFDIIKKFIAHVILYVKNFS 359 Query: 280 -RNMTVINSKSRLKDVFEKCKIELRRINSESIRTYNILDLCLKPSKNLDENILARHSRKI 338 RN T + D EKC I++ I I LC K + ++++ ++ K+ Sbjct: 360 VRNRT--KAFIYFDDFIEKCTKSSNYIHNTYINNETIFQLCFN-KKYIPISVIS-NNEKL 415 Query: 339 LGLYDNAIFYKYLLKELADTASQRAEAIESAMRVIDEKITGDETKWNWLPHEIKYNILEY 398 L + +Y +LK+ + + + E I I + + WN +P EIK+ I+ Sbjct: 416 LKKHTKLFYYGNILKKNIEKSKKYYENIYKVSCCISN-LCDTCSYWNTIPLEIKFKIVNN 474 Query: 399 IGNKELDI 406 + ++++ Sbjct: 475 LSLNDIEM 482 Score = 41.6 bits (96), Expect = 4e-006 Identities = 51/236 (21%), Positives = 99/236 (41%), Gaps = 33/236 (13%) Query: 94 NDVIYKKGNTPLHLATISKNLDMMRLLIARGADTDVPNTDRFTPL-----HLAVMSKDIK 148 N+++ + +L S ++D+++LLI G + + + TPL ++ + Sbjct: 27 NEIVNEYSLFQKYLQRDSPSVDIVKLLINLGGNVNGLENEYSTPLCTILSNIKKYKHMLD 86 Query: 149 GIELLLDHRACTNIEDCYGCTPLIIAMSKG----DTEVCRMLLDSGANIDYFSKRPCVTA 204 +++L+++ A N ++ G TPL +S G + E+ ++ GA SK Sbjct: 87 VVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTML 146 Query: 205 MCYAIQNN---KIDMVSMFLKRGADSNIVFTVMNEEHTTLEMICNMDTNPESESVDMLIA 261 Y N+ I+++ + L+ G D N + E++ TL+ C N +D + A Sbjct: 147 QVYVKTNHHIIDIEIIKILLESGIDINTISN--KEKYDTLD--CYFKYN-----IDRIDA 197 Query: 262 DIALRQYTNTISSDKGFSRNMTVINSKSRLKDVFEKCKIELRRINSESIRTYNILD 317 +I + D GF + K +L + + RR+ NILD Sbjct: 198 NIL------KLFVDNGFIIKKEDKSHKKKLMEYLNSLLYDNRRVKK------NILD 241 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,041 Number of Sequences: 156 Number of extensions: 2482 Number of successful extensions: 25 Number of sequences better than 1.0e-005: 2 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 8 length of query: 410 length of database: 48,119 effective HSP length: 64 effective length of query: 346 effective length of database: 38,135 effective search space: 13194710 effective search space used: 13194710 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634911|ref|NP_039204.1| ORF FPV241 Ankyrin repeat gene family protein [Fowlpox virus] (106 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.316 0.132 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,919 Number of Sequences: 156 Number of extensions: 737 Number of successful extensions: 14 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 0 length of query: 106 length of database: 48,119 effective HSP length: 51 effective length of query: 55 effective length of database: 40,163 effective search space: 2208965 effective search space used: 2208965 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634912|ref|NP_039205.1| ORF FPV242 Ankyrin repeat gene family protein [Fowlpox virus] (358 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 45 3e-007 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 45.1 bits (105), Expect = 3e-007 Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 38/247 (15%) Query: 54 VNAVKVLLDKGDNLVYVINSFPILPPLYCAIIGFCKLTRRNKISNALEKINNHKKIIEAL 113 V+ VK+L++ G N+ + N + PL C I+ K K + L+ + K +IE Sbjct: 47 VDIVKLLINLGGNVNGLENEYST--PL-CTILSNIK-----KYKHMLDVV---KILIENN 95 Query: 114 VDKGVELTGLEIALSC--------KNIWLIKFLIEKGISVE------YTGF-FPVGVNYN 158 D + + E L C N ++ ++I+ G YT V N++ Sbjct: 96 ADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHH 155 Query: 159 TIDIDICKVLLENKIDIN------KPVCGETLVRYAIRSSDLNLLKYLISKGADIEKRNK 212 IDI+I K+LLE+ IDIN K + +Y I D N+LK + G I+K +K Sbjct: 156 IIDIEIIKILLESGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDNGFIIKKEDK 215 Query: 213 YEQDP--NIIEAVEKGNLGIVEYLID---NGISIDTVSIYNHKPAIYYAILAGHYNMVDL 267 + + ++ N + + ++D I+++ V P +YY++ + + + Sbjct: 216 SHKKKLMEYLNSLLYDNRRVKKNILDFIFTYINVNQVDELGFNP-LYYSVSHNNRTIFEY 274 Query: 268 LLRRGAN 274 +++ G N Sbjct: 275 IIQLGGN 281 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.322 0.142 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,447 Number of Sequences: 156 Number of extensions: 2202 Number of successful extensions: 25 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 2 length of query: 358 length of database: 48,119 effective HSP length: 63 effective length of query: 295 effective length of database: 38,291 effective search space: 11295845 effective search space used: 11295845 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 92 (40.0 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634913|ref|NP_039206.1| ORF FPV243 Ankyrin repeat gene family protein [Fowlpox virus] (262 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 50 9e-009 gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 48 3e-008 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 42 1e-006 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 49.7 bits (117), Expect = 9e-009 Identities = 37/116 (31%), Positives = 58/116 (49%), Gaps = 9/116 (7%) Query: 139 ILRKNKFGNDITMYDILLEKNMNQL-VQIIKNPLIKKRCSELILFKRIVKNNIIYIENRY 197 ++ K K G +I++YD++ + + V+ +KN K S I +RI + I N Y Sbjct: 385 LMEKEKVGKNISVYDLVFNREKETIPVKFLKNENFLKFTSSTIYGERIKQ----IINNTY 440 Query: 198 QKIHGANTVIEFYQYEYTDK---WMILPQEIKINILCYLDNKELDYIYESSLENNK 250 + + NT I +Y +K W LP EIKI+IL YLD + D I ++ K Sbjct: 441 RYENCLNTSINILN-KYCNKKNYWNYLPTEIKIHILEYLDFSDFDTIINPKRKSKK 495 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 47.8 bits (112), Expect = 3e-008 Identities = 52/243 (21%), Positives = 98/243 (39%), Gaps = 25/243 (10%) Query: 8 ISRFLLEYGADVNIKNRYGSTPLFEAICNCSCKNVKLFLENNADINEVDLDGDATLMKIF 67 I ++++ G ++N + G T LF+A N S LE + + T K+ Sbjct: 271 IFEYIIQLGGNINCISELGDTLLFKAFENRSLFIFNSILEKKPNKKTISY----TYYKLR 326 Query: 68 NYNCRIHSGLNSVHLRIARIVIPYLKVIGLKNKHVKNVHAYKQNINFFNSVKQLRLISDE 127 + + +N + I + K + +V Y +N + N K + D+ Sbjct: 327 KHLLDVGDFINQIEFDIIK-------------KFIAHVILYVKNFSVRNRTKAF-IYFDD 372 Query: 128 SDREINRMKNTILRKNKFGNDITMYDILLEKNMNQLVQIIKNPLIKKRCSELILFKRIVK 187 + + N I N + N+ T++ + K + I N + K+ ++L + I+K Sbjct: 373 FIEKCTKSSNYI--HNTYINNETIFQLCFNKKYIPISVISNNEKLLKKHTKLFYYGNILK 430 Query: 188 NNIIYIENRYQKIHGANTVIEFYQYEYTDKWMILPQEIKINILCYLDNKELDYIYESSLE 247 NI + Y+ I+ + I + W +P EIK I+ L ++ E L+ Sbjct: 431 KNIEKSKKYYENIYKVSCCIS-NLCDTCSYWNTIPLEIKFKIVNNLSLNDI----EMFLK 485 Query: 248 NNK 250 NNK Sbjct: 486 NNK 488 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 42.4 bits (98), Expect = 1e-006 Identities = 55/241 (22%), Positives = 103/241 (41%), Gaps = 15/241 (6%) Query: 11 FLLEYGADVNIKNRYGSTPLFEAICNCSCKNVKLFLENNADINEVDLDGDATL-MKIFN- 68 ++L+Y +N K+ YG TPL ++ + FL + IN + G+ + + I N Sbjct: 392 YILKY-FPINEKDLYGFTPLLSSVYVNNVNFFNYFLRLGSSINVISEIGETCVSIPIENQ 450 Query: 69 YNCRIHSGLNSV-HLRIARIVIPYL--KVIGLKNKHVKNVHAYKQNINFF-NSVKQLRLI 124 Y + L+S +++ + + YL K + K H K + K R I Sbjct: 451 YKRFLKIVLDSKPNIKTIKATLRYLSDKEFNTRTKFKLMKHCIKYLFTLDPDEYKNHRFI 510 Query: 125 SDESDREINR-MKNTILRKNKFGNDITMYDILLEKNMNQLVQIIKNPLIKKRCSELILFK 183 + +N K+ I K+ F +++YD++ KN + + ++K I + Sbjct: 511 FSKFKSVVNECQKDIITMKSTFLKTVSVYDLIFNKNGTMHKRYLNTMEVRKYLKSNIYAE 570 Query: 184 RI--VKNNIIYIENRYQKIHGANTVIEFYQYEYTDKWMILPQEIKINILCYLDNKELDYI 241 R+ V NN I + + I ++ + W ILP+EIK NI + +++ I Sbjct: 571 RVRCVINNSIEKDKKIDSIIKKVNILCKHTI-----WDILPEEIKDNIFNCMSLRDIRVI 625 Query: 242 Y 242 + Sbjct: 626 F 626 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.140 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,570 Number of Sequences: 156 Number of extensions: 2558 Number of successful extensions: 28 Number of sequences better than 1.0e-005: 3 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 8 length of query: 262 length of database: 48,119 effective HSP length: 60 effective length of query: 202 effective length of database: 38,759 effective search space: 7829318 effective search space used: 7829318 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 91 (39.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634914|ref|NP_039207.1| ORF FPV244 Ankyrin repeat gene family protein [Fowlpox virus] (668 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 71 1e-014 gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 69 5e-014 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 55 6e-010 gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S782... 50 3e-008 gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 42 5e-006 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 70.9 bits (172), Expect = 1e-014 Identities = 119/557 (21%), Positives = 230/557 (40%), Gaps = 75/557 (13%) Query: 160 IAEMLLKKGIDVN----AKDVYCRTPIHYAAERGNTKMVNL---LLSYGADVNIITLDDL 212 I E++ G+ N KD Y PI + ++L L + + NI+ D Sbjct: 93 IIELITSYGVSFNDEPIKKDSY---PILFLVSNEKFNHISLYEYLENNNINFNIVRSDGY 149 Query: 213 SVLEYAVDSKN---IDTIKAIIDNRSNINKNDLSLLKAI--------RNTDLETSLL--L 259 ++L ++S N + +K +I N N+N N L+ + + + L S++ L Sbjct: 150 NLLHLYLESCNNIKLSVLKLLIKN--NVNVNGLTRFRNLTPLHIYLCKGYCLNYSVINFL 207 Query: 260 YDSGFSVNSIDVYKNTPLHYAVQAPSLSR----LVPKLLERGIDVNAKNIKGETPL--YL 313 D+G +N K T L+ + L KL+++G D+N K+ G TPL ++ Sbjct: 208 IDTGSEINC---GKETLLYSFFTTCDNEKVFKSLTTKLIKKGADINQKSESGLTPLMGFV 264 Query: 314 MAKNGYDTENIRTLIMRGADVNAADSLYITPLHQASTLDRYK-------DTVITLLELGA 366 + NI+ ++ G + L + P + L Y T+ TLLE G Sbjct: 265 AYSDLATPNNIKFILSCGGN-----QLVVNPQSNETLLHIYLRRYDVSLSTISTLLESGI 319 Query: 367 NVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTVLHFALYGTNPYMSVK 426 N+N+ ++ + TP+H +N + ++DY A ++++ FA ++ Sbjct: 320 NINSVNFKNYTPLHVYVDKNIEHLSLDVVDYLIYKGATTERVNRYDCFAKTILEVFLEKN 379 Query: 427 TLIDRGAN-----------VNSKNKYLSTPLHYACKKNCKPEVIKMLLDNGADVNAINIR 475 ++ + +N K+ Y TPL + N L G+ +N I+ Sbjct: 380 KFLNNSSRYFINYILKYFPINEKDLYGFTPLLSSVYVN-NVNFFNYFLRLGSSINVISEI 438 Query: 476 NQYPLLIALE--YHGIVNILLHYGAELRDSRVLHKSLNSNMFSFR--YIIAHICIQDFIR 531 + + I +E Y + I+L ++ + + L+ F+ R + + CI+ Sbjct: 439 GETCVSIPIENQYKRFLKIVLDSKPNIKTIKATLRYLSDKEFNTRTKFKLMKHCIKYLFT 498 Query: 532 HDIRSEVNPLREIIQSDDTFKSIWLSCKEELKDISKIRINMFYSLDIF--VISKNMNLLH 589 D E R I FKS+ C+ KDI ++ ++ ++ + +KN + Sbjct: 499 LD-PDEYKNHRFIFSK---FKSVVNECQ---KDIITMKSTFLKTVSVYDLIFNKNGTMHK 551 Query: 590 HLVNNPIIKEINTYYFYN-YGDRLKTSISLASNRHKILEKSRSKLDEILDSSGWSKLPPD 648 +N E+ Y N Y +R++ I+ + + K ++ K++ + + W LP + Sbjct: 552 RYLNT---MEVRKYLKSNIYAERVRCVINNSIEKDKKIDSIIKKVNILCKHTIWDILPEE 608 Query: 649 IKLSILEFIGNTELRKI 665 IK +I + ++R I Sbjct: 609 IKDNIFNCMSLRDIRVI 625 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 68.6 bits (166), Expect = 5e-014 Identities = 122/506 (24%), Positives = 202/506 (39%), Gaps = 75/506 (14%) Query: 183 HYAAERGNTKMVNLLLSYGADVNIITLDDLSVLEYAV-DSKNIDTIKAIIDNRSNINKND 241 +Y A RGN K L + D N I + +Y DS ++D +K +I+ N+N Sbjct: 8 NYIAFRGNPK---LSIIKSCDPNEIVNEYSLFQKYLQRDSPSVDIVKLLINLGGNVNG-- 62 Query: 242 LSLLKAIRNTDLETSLLLYDSGFSVNSIDVYKNTPLHYAVQAPSLSRLVPKLLERGIDVN 301 L+ +T L T L ++I YK+ + +V L+E DVN Sbjct: 63 ---LENEYSTPLCTIL---------SNIKKYKH-----------MLDVVKILIENNADVN 99 Query: 302 AKNIKGETPLYLMAKNGY---DTENIRTLIMRGADVNAAD-------SLYITPLHQASTL 351 KN GETPLY + NGY + E + +I GA+ +Y+ H + Sbjct: 100 KKNSDGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIIDI 159 Query: 352 DRYKDTVITLLELGANVNARDYCDKTP-----IHYAAVRNNVVIINTLLDYGADI----E 402 + K LLE G ++N +K Y R + I+ +D G I + Sbjct: 160 EIIK----ILLESGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDNGFIIKKEDK 215 Query: 403 ALSQKIGTVLHFALYGTNPY-MSVKTLIDRGANVNSKNKYLSTPLHYACKKNCKPEVIKM 461 + +K+ L+ LY ++ I NVN ++ PL+Y+ N + + + Sbjct: 216 SHKKKLMEYLNSLLYDNRRVKKNILDFIFTYINVNQVDELGFNPLYYSVSHNNR-TIFEY 274 Query: 462 LLDNGADVNAINIRNQYPLLIALEYHG--IVNILLHYGAELRDSRVLHKSLNSNMFSFRY 519 ++ G ++N I+ L A E I N +L + + L ++ Sbjct: 275 IIQLGGNINCISELGDTLLFKAFENRSLFIFNSILEKKPNKKTISYTYYKLRKHLLDVGD 334 Query: 520 IIAHI---CIQDFIRHDIR-----SEVNPLREIIQSDDTFKSIWLSCKEELKDISKIRIN 571 I I I+ FI H I S N + I DD + C + I IN Sbjct: 335 FINQIEFDIIKKFIAHVILYVKNFSVRNRTKAFIYFDDFIE----KCTKSSNYIHNTYIN 390 Query: 572 MFYSLDIFVISKNMNLLHHLV--NNPIIKEINTYYFYNYGDRLKTSISLASNRHKILEKS 629 + IF + N + V NN + + +T FY YG+ LK +I + ++ + K Sbjct: 391 ---NETIFQLCFNKKYIPISVISNNEKLLKKHTKLFY-YGNILKKNIEKSKKYYENIYKV 446 Query: 630 RSKLDEILDS-SGWSKLPPDIKLSIL 654 + + D+ S W+ +P +IK I+ Sbjct: 447 SCCISNLCDTCSYWNTIPLEIKFKIV 472 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 55.1 bits (131), Expect = 6e-010 Identities = 74/308 (24%), Positives = 134/308 (43%), Gaps = 38/308 (12%) Query: 124 VLKEGISGNEISYNKINKSIEYMKLIKERIQQDELLIAEMLLKKGIDVNAKDVYCRTPIH 183 +++ G NE N N+SI + L ++ + D I +LL+ G DVN + Y Sbjct: 22 LIRTGFDVNE--ENCDNESILLLYLKRKDVSID---ILRLLLENGADVNYRSYY------ 70 Query: 184 YAAERGNTKMVNLLLSYGADVNIITLDDLSVLEYAVDS--KNIDTIKAIIDNRSNINKND 241 +T + +++ +Y D N I + +L++ D K + + I+ N + N+ Sbjct: 71 ------DTSITSVIRNYELDSNTIKQIIILLLKFGADINLKPFNGVYTIMPFIYNFHINN 124 Query: 242 LSLLKAIRNTDLETSLLLYDS-GFSVNSIDVYKNTPLHYAVQAPSLSRLVPK-LLERGID 299 ++ K + + + + DS GF++ H ++ S+ V K LL + Sbjct: 125 CNMFKFLLSKGIYVKNDIIDSRGFNL----------FHMYFESFSVKIDVIKILLSFNVG 174 Query: 300 VNAKNIKGETPLYLMAKNGYDTENIRT---LIMRGADV----NAADSLYITPLHQASTLD 352 + K+ KG TP+ + + D +++ LI +G ++ N + SL T L L Sbjct: 175 LFEKSFKGLTPMNIYFDHFIDVISLKVIKYLISKGVNIETNNNGSKSLLETFLRSNKILS 234 Query: 353 RYKDTVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTVL 412 R V+ + +N D PI +A +N N LL G DI +S+K TV+ Sbjct: 235 RKCFKVLNFILKYVKLNKVDEKGLNPILISAKADNYDAFNHLLKLGDDIYNVSKKGNTVI 294 Query: 413 HFALYGTN 420 +A+ N Sbjct: 295 TYAIKREN 302 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,489 Number of Sequences: 156 Number of extensions: 4497 Number of successful extensions: 73 Number of sequences better than 1.0e-005: 5 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 24 length of query: 668 length of database: 48,119 effective HSP length: 68 effective length of query: 600 effective length of database: 37,511 effective search space: 22506600 effective search space used: 22506600 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634915|ref|NP_039208.1| ORF FPV245 Ankyrin repeat gene family protein [Fowlpox virus] (436 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 57 8e-011 gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 57 1e-010 gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 52 2e-009 gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 47 1e-007 gi|15150451|ref|NP_150446.1| LSDV012 ankyrin repeat protein S782... 46 2e-007 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 57.4 bits (137), Expect = 8e-011 Identities = 83/327 (25%), Positives = 138/327 (41%), Gaps = 45/327 (13%) Query: 51 VELFIKHGAQVNHVNTKIPNPLLTAIKIG--SHDIVKLLLINGVDTSILPVPCINKEMIK 108 VEL I+ G VN N + LL +K S DI++LLL NG D + + Sbjct: 19 VELLIRTGFDVNEENCDNESILLLYLKRKDVSIDILRLLLENGADVNY-----------R 67 Query: 109 TILDSGVKVNTKNAKSKTFLHYAIKNNDL-EVIKMLFEYGADVNIKDDNGCY---PIHIA 164 + D+ + +N Y + +N + ++I +L ++GAD+N+K NG Y P Sbjct: 68 SYYDTSITSVIRN--------YELDSNTIKQIIILLLKFGADINLKPFNGVYTIMPFIYN 119 Query: 165 TRSNSYEIIKLLLEKGAYA--NVKDNYGNSPLHNAAKYGDYA--CIKLVLDHTNNISNKC 220 N+ + K LL KG Y ++ D+ G + H + IK++L + K Sbjct: 120 FHINNCNMFKFLLSKGIYVKNDIIDSRGFNLFHMYFESFSVKIDVIKILLSFNVGLFEKS 179 Query: 221 NNGVTPL-----HNAILYNRSAVELLINNRSINDTDVDGYTPL-------HYALQPPCSI 268 G+TP+ H + + ++ LI+ +T+ +G L + L C Sbjct: 180 FKGLTPMNIYFDHFIDVISLKVIKYLISKGVNIETNNNGSKSLLETFLRSNKILSRKCFK 239 Query: 269 DIIDILLYNNADISIKDNNGRNPIDTAFKYINRDSVIKELLANAVLINEVGKLKDTTILE 328 + IL Y ++ D G NPI + K N D+ LL I V K K T++ Sbjct: 240 VLNFILKY--VKLNKVDEKGLNPILISAKADNYDA-FNHLLKLGDDIYNVSK-KGNTVIT 295 Query: 329 HKEIKDNTVFSNFVYECNEEIKKMKKT 355 + ++N N V + +K+T Sbjct: 296 YAIKRENIDILNRVLAIEPKKYLIKQT 322 >gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lumpy skin disease virus] Length = 447 Score = 57.0 bits (136), Expect = 1e-010 Identities = 99/436 (22%), Positives = 176/436 (39%), Gaps = 83/436 (19%) Query: 52 ELFIKHGAQVNHVNTKIPNPLLTAIKIGSHDIVKLLLINGVDTSILPVPCINKEMIKTIL 111 E++I +V KI N + T G ++ + L ++ S+ K+++ ++ Sbjct: 13 EIYINQSNLKINVLKKIINDIPTTYHKGIYNNLLLTVLGNKSISLSVQKY--KKILSFLV 70 Query: 112 DSGVKVNTKNAKSKTFLHYAIKNND---LEVIKMLFEYGADVNIKDDNGCYPIH--IATR 166 D+G +NTK LHY + +N +++IK L + GAD+ K NG +H + + Sbjct: 71 DNGADLNTKIKYKYNALHYYLYSNSNVTVDIIKFLIKKGADIT-KKCNGDNVLHTYLCNK 129 Query: 167 SNSYEIIKLLLEKGAYANVKDNYGNSP----LHNAAKYGDYACIKLVLDHTNNISNKCNN 222 + +++IK L+ K ++ ++P + N + +KL+ NI NK + Sbjct: 130 NIDFKVIKFLVNKKIDLGDRNLDDHTPVNIYIRNKRNNCEIDTLKLLFLVDFNIYNKEDI 189 Query: 223 GVTPLHNAILYNRS-------AVELLINNRSINDTDVDGYTPLHYA------------LQ 263 ++ L + Y +S V ++ N SIN D +G+ P+ YA L+ Sbjct: 190 FLSALDVFLDYLKSYTRKSLDIVNYILENISINSVDSNGFNPILYATVSGQKVFFDYFLK 249 Query: 264 PPCSIDIIDILLYNNADISIKD----------------NNGRNPIDTAFKYIN------- 300 CSI+I +S+ D N + Y+ Sbjct: 250 LGCSINITTSCGETCGSLSLMDCDYCTFKTFLSKKPNLQTIENTLSCLSNYLEDIYYCDL 309 Query: 301 RDSVIKELLANAVLINEVGKLKDTTILEHKEIKDNTVFSNFVYECNEEIKKMKKTKCVGD 360 + + KELL A + L H+ IK F + E I +M K +GD Sbjct: 310 KFKMFKELLLEAFM------LDSEFYNRHESIK--LYFPKTISLYKEPIVQMCSDK-IGD 360 Query: 361 YSMFDVYM----IRYKHK-YDGNKDSIKDY----LRCL------DDNSTRMLKTIDI--- 402 S++D+ IRY + Y ++K Y +C+ N +++KTI+I Sbjct: 361 KSVYDIIFKNSDIRYCYNDYINKYTNLKYYGNLIRKCILASKMRKKNIVKIIKTINIAPY 420 Query: 403 -NEFPI-YSMYLVRCL 416 N P MY++ L Sbjct: 421 WNTLPTEIKMYIINFL 436 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 52.4 bits (124), Expect = 2e-009 Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 32/237 (13%) Query: 134 NNDLEVIKMLFEYGADVN-IKDDNGCYPIHIATRSNSYEIIKLLLEKGAYANVKDNYGNS 192 N L +IK D N I ++ + ++ S S +I+KLL+ G N +N ++ Sbjct: 15 NPKLSIIK-----SCDPNEIVNEYSLFQKYLQRDSPSVDIVKLLINLGGNVNGLENEYST 69 Query: 193 P----LHNAAKYGDYA-CIKLVLDHTNNISNKCNNGVTPLH----NAILYNRSAVELLIN 243 P L N KY +K+++++ +++ K ++G TPL+ N + N + L + Sbjct: 70 PLCTILSNIKKYKHMLDVVKILIENNADVNKKNSDGETPLYCLLSNGYIKNNKEILLYMI 129 Query: 244 NRSINDT--DVDGYTPLHYALQPP---CSIDIIDILLYNNADISIKDNNGR-NPIDTAFK 297 T DGYT L ++ I+II ILL + DI+ N + + +D FK Sbjct: 130 QMGAETTLLSKDGYTMLQVYVKTNHHIIDIEIIKILLESGIDINTISNKEKYDTLDCYFK 189 Query: 298 Y-INR--DSVIKELLANAVLINEVGKLKDTTILEH--------KEIKDNTVFSNFVY 343 Y I+R +++K + N +I + K ++E+ + +K N + F Y Sbjct: 190 YNIDRIDANILKLFVDNGFIIKKEDKSHKKKLMEYLNSLLYDNRRVKKNILDFIFTY 246 Score = 48.5 bits (114), Expect = 4e-008 Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 39/256 (15%) Query: 17 VEKLIKNKGNCINISVEETTTPLIDAIRTGNAK-------IVELFIKHGAQVNHVNTKIP 69 + KL+ N G +N E +TPL + N K +V++ I++ A VN N+ Sbjct: 49 IVKLLINLGGNVNGLENEYSTPLCTIL--SNIKKYKHMLDVVKILIENNADVNKKNSDGE 106 Query: 70 NPLLTAIKIG----SHDIVKLLLINGVDTSILPVP--------------CINKEMIKTIL 111 PL + G + +I+ ++ G +T++L I+ E+IK +L Sbjct: 107 TPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIIDIEIIKILL 166 Query: 112 DSGVKVNTKNAKSK-----TFLHYAIKNNDLEVIKMLFEYGADVNIKDDNGCYPIHIATR 166 +SG+ +NT + K K + Y I D ++K+ + G + +D + + Sbjct: 167 ESGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDNGFIIKKEDKSHKKKLMEYLN 226 Query: 167 SNSYE---IIKLLLE-KGAYANVK--DNYGNSPLHNAAKYGDYACIKLVLDHTNNISNKC 220 S Y+ + K +L+ Y NV D G +PL+ + + + + ++ NI+ Sbjct: 227 SLLYDNRRVKKNILDFIFTYINVNQVDELGFNPLYYSVSHNNRTIFEYIIQLGGNINCIS 286 Query: 221 NNGVTPLHNAILYNRS 236 G T L A NRS Sbjct: 287 ELGDTLLFKA-FENRS 301 Score = 43.1 bits (100), Expect = 1e-006 Identities = 62/284 (21%), Positives = 123/284 (42%), Gaps = 47/284 (16%) Query: 105 EMIKTILDSGVKVNTKNAKSKTFLHYAIKN-----NDLEVIKMLFEYGADVNIKDDNGCY 159 +++K +++ G VN + T L + N + L+V+K+L E ADVN K+ +G Sbjct: 48 DIVKLLINLGGNVNGLENEYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKNSDGET 107 Query: 160 PIHIATRS----NSYEIIKLLLEKGAYANVKDNYGNSPLHNAAKYG----DYACIKLVLD 211 P++ + N+ EI+ +++ GA + G + L K D IK++L+ Sbjct: 108 PLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIIDIEIIKILLE 167 Query: 212 ---HTNNISNKCNNGVTPL---HNAILYNRSAVELLINNRSINDTDVDGYTPLHYALQPP 265 N ISNK +N + + ++L ++N I + + Sbjct: 168 SGIDINTISNKEKYDTLDCYFKYNIDRIDANILKLFVDNGFIIKKEDKSHKKK------- 220 Query: 266 CSIDIIDILLYNN--------------ADISIKDNNGRNPIDTAFKYINRDSVIKELLAN 311 ++ ++ LLY+N +++ D G NP+ + + NR ++ + ++ Sbjct: 221 -LMEYLNSLLYDNRRVKKNILDFIFTYINVNQVDELGFNPLYYSVSHNNR-TIFEYIIQL 278 Query: 312 AVLINEVGKLKDTTILEHKEIKDNTVFSNFVYECNEEIKKMKKT 355 IN + +L DT + + E + +F++ + E K KKT Sbjct: 279 GGNINCISELGDTLLFKAFENRSLFIFNSIL-----EKKPNKKT 317 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,069 Number of Sequences: 156 Number of extensions: 3868 Number of successful extensions: 60 Number of sequences better than 1.0e-005: 5 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 16 length of query: 436 length of database: 48,119 effective HSP length: 64 effective length of query: 372 effective length of database: 38,135 effective search space: 14186220 effective search space used: 14186220 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634916|ref|NP_039209.1| ORF FPV246 Ankyrin repeat gene family protein [Fowlpox virus] (592 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lum... 70 2e-014 gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lum... 58 6e-011 gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lum... 53 2e-009 gi|15150587|ref|NP_150582.1| LSDV148 ankyrin repeat protein [lum... 43 3e-006 >gi|15150584|ref|NP_150579.1| LSDV145 ankyrin repeat protein [lumpy skin disease virus] Length = 634 Score = 70.1 bits (170), Expect = 2e-014 Identities = 96/429 (22%), Positives = 174/429 (40%), Gaps = 78/429 (18%) Query: 182 LISRGAKLDIKNEYGYTPLRNTVINGNFALTKLLLDNGADASIKCNGMTIFEISTLSQNV 241 LI +GA ++ K+E G TPL G A + L N + C G + + N Sbjct: 242 LIKKGADINQKSESGLTPLM-----GFVAYSDLATPNNIKFILSCGGNQL--VVNPQSNE 294 Query: 242 DMIKEIIKRCGYNHDSKILCRVASKGYINVIHFLLDIGFNVNSFDSFGETPLHAATRSG- 300 ++ ++R + ++ I LL+ G N+NS + TPLH Sbjct: 295 TLLHIYLRRYDVS--------------LSTISTLLESGININSVNFKNYTPLHVYVDKNI 340 Query: 301 ---SVETVNALISYGSTVDIKDNIGSTPLMHACGNKDISKLLIEKGADPNIS-------- 349 S++ V+ LI G+T + + + C K I ++ +EK N S Sbjct: 341 EHLSLDVVDYLIYKGATTERVNR-------YDCFAKTILEVFLEKNKFLNNSSRYFINYI 393 Query: 350 ---------NIHGYTPLHNAAAYGSVDVVNLLLSYGVSIDAKDKI---IGSTPLDHGVHH 397 +++G+TPL ++ +V+ N L G SI+ +I S P+++ + Sbjct: 394 LKYFPINEKDLYGFTPLLSSVYVNNVNFFNYFLRLGSSINVISEIGETCVSIPIEN--QY 451 Query: 398 PEIVKLLLEKGANPNTINL---YGYTPLKNAILKSRLSAEYIIPYVVLQDFSILDGRNMP 454 +K++L+ N TI Y N K +L ++ I Y+ D P Sbjct: 452 KRFLKIVLDSKPNIKTIKATLRYLSDKEFNTRTKFKL-MKHCIKYLFTLD---------P 501 Query: 455 GSGINMELIRNDKLLQNIKTSCEIELKRMKEIRISNRYSLDIFIT---TSNIKFLSRLVT 511 N I + +++ C+ ++ MK + D+ T + ++L+ + Sbjct: 502 DEYKNHRFIFSK--FKSVVNECQKDIITMKSTFLKTVSVYDLIFNKNGTMHKRYLNTMEV 559 Query: 512 NDKFSSINISSFPIYKSLLQNAINSAIELRKCLDVALYTINSRLENTLWDMLPIEIKNQI 571 S IY ++ IN++IE K +D + +N ++T+WD+LP EIK+ I Sbjct: 560 RKYLKS------NIYAERVRCVINNSIEKDKKIDSIIKKVNILCKHTIWDILPEEIKDNI 613 Query: 572 VLLLDNTDL 580 + D+ Sbjct: 614 FNCMSLRDI 622 Score = 57.8 bits (138), Expect = 8e-011 Identities = 85/364 (23%), Positives = 150/364 (40%), Gaps = 48/364 (13%) Query: 225 KCNGMTIFEISTLSQNVDMIKEIIKRCGYNHDSKILCRVASKGYINVIHFLLDIGFNVNS 284 K N ++++E +N ++ I++ GYN + + ++V+ L+ NVN Sbjct: 124 KFNHISLYEYL---ENNNINFNIVRSDGYNL-LHLYLESCNNIKLSVLKLLIKNNVNVNG 179 Query: 285 FDSFGE-TPLHAATRSG---SVETVNALISYGSTVDIKDNIGSTPLMHA----CGN---- 332 F TPLH G + +N LI GS + N G L+++ C N Sbjct: 180 LTRFRNLTPLHIYLCKGYCLNYSVINFLIDTGSEI----NCGKETLLYSFFTTCDNEKVF 235 Query: 333 KDISKLLIEKGADPNISNIHGYTPLHNAAAYGSVDVVN---LLLSYGVSIDAKDKIIGST 389 K ++ LI+KGAD N + G TPL AY + N +LS G + + T Sbjct: 236 KSLTTKLIKKGADINQKSESGLTPLMGFVAYSDLATPNNIKFILSCGGNQLVVNPQSNET 295 Query: 390 PLDHGVHHPEI----VKLLLEKGANPNTINLYGYTPLKNAILKS--RLSAEYIIPYVVLQ 443 L + ++ + LLE G N N++N YTPL + K+ LS + ++ Y++ + Sbjct: 296 LLHIYLRRYDVSLSTISTLLESGININSVNFKNYTPLHVYVDKNIEHLSLD-VVDYLIYK 354 Query: 444 DFSILDGRNMPGSGINMELIRNDKLLQNIKTSCEIELKRMKEIRISNRYSLDIFITTSNI 503 G E + KT E+ L++ K + S+RY ++ + I Sbjct: 355 -------------GATTERVNRYDCF--AKTILEVFLEKNKFLNNSSRYFINYILKYFPI 399 Query: 504 KFLSRLVTNDKFSSINISSFPIYKSLLQ--NAINSAIEL-RKCLDVALYTINSRLENTLW 560 SS+ +++ + L+ ++IN E+ C+ + + R + Sbjct: 400 NEKDLYGFTPLLSSVYVNNVNFFNYFLRLGSSINVISEIGETCVSIPIENQYKRFLKIVL 459 Query: 561 DMLP 564 D P Sbjct: 460 DSKP 463 >gi|15150591|ref|NP_150586.1| LSDV152 ankyrin repeat protein [lumpy skin disease virus] Length = 489 Score = 58.2 bits (139), Expect = 6e-011 Identities = 80/283 (28%), Positives = 122/283 (42%), Gaps = 41/283 (14%) Query: 299 SGSVETVNALISYGSTVDIKDNIGSTPLMHACGN-------KDISKLLIEKGADPNISNI 351 S SV+ V LI+ G V+ +N STPL N D+ K+LIE AD N N Sbjct: 44 SPSVDIVKLLINLGGNVNGLENEYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKNS 103 Query: 352 HGYTPLHNAAAYGSVDVVNLLLSYGVSIDAKDKII---GSTPL------DHGVHHPEIVK 402 G TPL+ + G + +L Y + + A+ ++ G T L +H + EI+K Sbjct: 104 DGETPLYCLLSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIIDIEIIK 163 Query: 403 LLLEKGANPNTI-NLYGYTPLKNAILKSRLSAEYIIPYVVLQDFSILDGRNMPGSGINME 461 +LLE G + NTI N Y L +Y I + D +IL G I E Sbjct: 164 ILLESGIDINTISNKEKYDTLD-------CYFKYNIDRI---DANILKLFVDNGFIIKKE 213 Query: 462 LIRNDKLLQNIKTSCEIELKRMKEIRISNRYSLDIFITTSNIKFLSRLVTNDKFSSINIS 521 + K L S + +R+K + LD T N+ + L N + S++ + Sbjct: 214 DKSHKKKLMEYLNSLLYDNRRVK------KNILDFIFTYINVNQVDELGFNPLYYSVSHN 267 Query: 522 SFPIYKSLLQ--NAINSAIELRKCL------DVALYTINSRLE 556 + I++ ++Q IN EL L + +L+ NS LE Sbjct: 268 NRTIFEYIIQLGGNINCISELGDTLLFKAFENRSLFIFNSILE 310 Score = 51.6 bits (122), Expect = 6e-009 Identities = 72/285 (25%), Positives = 119/285 (41%), Gaps = 45/285 (15%) Query: 189 LDIKNEYGYTPLRNTVINGNFALTKLLLDNGADASIKCNGMTIFE--ISTLSQNVDMIKE 246 +DI + Y Y R GN KL + D + N ++F+ + S +VD++K Sbjct: 1 MDIDDIYNYIAFR-----GN---PKLSIIKSCDPNEIVNEYSLFQKYLQRDSPSVDIVKL 52 Query: 247 IIKRCGY-----NHDSKILCRVAS-----KGYINVIHFLLDIGFNVNSFDSFGETPLHAA 296 +I G N S LC + S K ++V+ L++ +VN +S GETPL+ Sbjct: 53 LINLGGNVNGLENEYSTPLCTILSNIKKYKHMLDVVKILIENNADVNKKNSDGETPLYCL 112 Query: 297 TRSGSVETVNALISY----GSTVDIKDNIGSTPLM------HACGNKDISKLLIEKGADP 346 +G ++ ++ Y G+ + G T L H + +I K+L+E G D Sbjct: 113 LSNGYIKNNKEILLYMIQMGAETTLLSKDGYTMLQVYVKTNHHIIDIEIIKILLESGIDI 172 Query: 347 N-ISNIHGYTPLHNAAAYG----SVDVVNLLLSYGVSIDAKDK--------IIGSTPLDH 393 N ISN Y L Y +++ L + G I +DK + S D+ Sbjct: 173 NTISNKEKYDTLDCYFKYNIDRIDANILKLFVDNGFIIKKEDKSHKKKLMEYLNSLLYDN 232 Query: 394 GVHHPEIVKLLLEKGANPNTINLYGYTPLKNAIL-KSRLSAEYII 437 I+ + N N ++ G+ PL ++ +R EYII Sbjct: 233 RRVKKNILDFIFTY-INVNQVDELGFNPLYYSVSHNNRTIFEYII 276 >gi|15150586|ref|NP_150581.1| LSDV147 ankyrin repeat protein [lumpy skin disease virus] Length = 498 Score = 53.1 bits (126), Expect = 2e-009 Identities = 106/454 (23%), Positives = 183/454 (39%), Gaps = 64/454 (14%) Query: 172 REDELKIAQLLISRGAKLDIKNEYGYT---PLRNTVINGNFA--LTKLLLDNGADASIK- 225 ++ + I +LL+ GA ++ ++ Y + +RN ++ N + LLL GAD ++K Sbjct: 47 KDVSIDILRLLLENGADVNYRSYYDTSITSVIRNYELDSNTIKQIIILLLKFGADINLKP 106 Query: 226 ---------------CNGMTIFEISTLSQNVDMIKEIIKRCGYNHDSKILCRVASKGYIN 270 N +F+ LS+ + + +II G+N + K I+ Sbjct: 107 FNGVYTIMPFIYNFHINNCNMFKF-LLSKGIYVKNDIIDSRGFNLFHMYFESFSVK--ID 163 Query: 271 VIHFLLDIGFNVNSFD-SF-GETPLHAATRSG----SVETVNALISYGSTVDIKDNIGST 324 VI LL FNV F+ SF G TP++ S++ + LIS G ++ +N GS Sbjct: 164 VIKILLS--FNVGLFEKSFKGLTPMNIYFDHFIDVISLKVIKYLISKGVNIETNNN-GSK 220 Query: 325 PLMHAC--GNKDISKL------LIEKGADPNISNIHGYTPLHNAAAYGSVDVVNLLLSYG 376 L+ NK +S+ I K N + G P+ +A + D N LL G Sbjct: 221 SLLETFLRSNKILSRKCFKVLNFILKYVKLNKVDEKGLNPILISAKADNYDAFNHLLKLG 280 Query: 377 VSIDAKDKIIGSTPLDHGVHHPEIVKLLLEKGANPNTINL---------YGYTPLKNAIL 427 I K G+T + + + I L P + YGY + L Sbjct: 281 DDIYNVSKK-GNTVITYAIKRENIDILNRVLAIEPKKYLIKQTFEYFSNYGYGGINGLFL 339 Query: 428 KSRLSAEYIIPYVVLQDFSILDGRNMPGSGINMELIRNDKLLQNIKTSCEIELKRMKEIR 487 R S + ++L +S + P N +R L NI ++ M++ + Sbjct: 340 SERKS----LMMILLMQYSF---KVYPIFYKNFYEVR--LLFPNIIEMYNEDILLMEKEK 390 Query: 488 ISNRYSL-DIFITTSNIKFLSRLVTNDKFSSINISSFPIYKSLLQNAINSAIELRKCLDV 546 + S+ D+ + + N+ F + +S IY ++ IN+ CL+ Sbjct: 391 VGKNISVYDLVFNREKETIPVKFLKNENF--LKFTSSTIYGERIKQIINNTYRYENCLNT 448 Query: 547 ALYTINSRL-ENTLWDMLPIEIKNQIVLLLDNTD 579 ++ +N + W+ LP EIK I+ LD +D Sbjct: 449 SINILNKYCNKKNYWNYLPTEIKIHILEYLDFSD 482 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.139 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,457 Number of Sequences: 156 Number of extensions: 3480 Number of successful extensions: 48 Number of sequences better than 1.0e-005: 4 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 16 length of query: 592 length of database: 48,119 effective HSP length: 67 effective length of query: 525 effective length of database: 37,667 effective search space: 19775175 effective search space used: 19775175 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 95 (41.2 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634917|ref|NP_039210.1| ORF FPV247 EFc gene family protein [Fowlpox virus] (124 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.326 0.143 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,808 Number of Sequences: 156 Number of extensions: 332 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 124 length of database: 48,119 effective HSP length: 53 effective length of query: 71 effective length of database: 39,851 effective search space: 2829421 effective search space used: 2829421 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634918|ref|NP_039211.1| ORF FPV248 N1R/p28 gene family protein [Fowlpox virus] (151 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host r... 67 3e-014 >gi|15150579|ref|NP_150574.1| LSDV140 putative RING finger host range protein [lumpy skin disease virus] Length = 240 Score = 66.6 bits (161), Expect = 3e-014 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 8/112 (7%) Query: 10 NNFCKLSYEDIEIIMMKENEYINATRLCSSRGRDILDWMSKESSVELINELDRINRSCND 69 N F L+YE +++I++ N Y+N T+LC G+ +W + +SS ++I N + + Sbjct: 7 NGFILLNYEKVKVIIVLANNYVNITKLCKPMGKSFHNWWNLKSSYQII-----CNIAKEE 61 Query: 70 YYDYRGIVLNVVSDSETSEL---YVHRDLILHISHWISPLFSLKVVKFINSY 118 + + NV ET E+ Y+H L+++I +WIS + K++ IN + Sbjct: 62 DIEVENLSFNVWKGQETKEVYGKYIHPKLLVYILNWISEEYCAKILSIINEF 113 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.319 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,946 Number of Sequences: 156 Number of extensions: 1151 Number of successful extensions: 7 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 1 length of query: 151 length of database: 48,119 effective HSP length: 55 effective length of query: 96 effective length of database: 39,539 effective search space: 3795744 effective search space used: 3795744 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634919|ref|NP_039212.1| ORF FPV249 hypothetical protein [Fowlpox virus] (105 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.137 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,364 Number of Sequences: 156 Number of extensions: 654 Number of successful extensions: 8 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 0 length of query: 105 length of database: 48,119 effective HSP length: 51 effective length of query: 54 effective length of database: 40,163 effective search space: 2168802 effective search space used: 2168802 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634920|ref|NP_039213.1| ORF FPV250 [Fowlpox virus] (140 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.316 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,938 Number of Sequences: 156 Number of extensions: 900 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 140 length of database: 48,119 effective HSP length: 54 effective length of query: 86 effective length of database: 39,695 effective search space: 3413770 effective search space used: 3413770 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634921|ref|NP_039214.1| ORF FPV251 Serpin gene family protein [Fowlpox virus] (148 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150588|ref|NP_150583.1| LSDV149 serpin-like protein [lumpy ... 65 9e-014 >gi|15150588|ref|NP_150583.1| LSDV149 serpin-like protein [lumpy skin disease virus] Length = 337 Score = 65.1 bits (157), Expect = 9e-014 Identities = 39/112 (34%), Positives = 63/112 (55%), Gaps = 3/112 (2%) Query: 37 MTLKEIVLYLPKFELEDDVDLKDALIHMGCNDLFK-SGELVGISDTKTLRIGNIRQKSVI 95 M L E+ + +PKF++E+ DLK +LI +G D+F S + ++ K L + N K+ I Sbjct: 221 MNLYEVNVKIPKFKIEETYDLKLSLISLGIIDIFDGSADFSNMTKNKNLSVDNFYHKTYI 280 Query: 96 KVDEYGTEAASVTESCTTD-GIKKIPIVKANVPFMFLVADVQTKIPLFLGIF 146 ++DE G E ++ + C D G + + AN PF+FL+ D LF+G F Sbjct: 281 EIDEEGAELSAASYCCVADCGCNEKEFI-ANKPFIFLIKDNINVSFLFIGKF 331 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.323 0.143 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,302 Number of Sequences: 156 Number of extensions: 554 Number of successful extensions: 5 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 1 length of query: 148 length of database: 48,119 effective HSP length: 55 effective length of query: 93 effective length of database: 39,539 effective search space: 3677127 effective search space used: 3677127 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 88 (38.5 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634939|ref|NP_039215.1| ORF FPV252 hypothetical protein [Fowlpox virus] (66 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.331 0.143 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8552 Number of Sequences: 156 Number of extensions: 386 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 66 length of database: 48,119 effective HSP length: 42 effective length of query: 24 effective length of database: 41,567 effective search space: 997608 effective search space used: 997608 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634934|ref|NP_039216.1| ORF FPV253 C-type lectin gene family protein [Fowlpox virus] (167 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.327 0.142 0.471 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,098 Number of Sequences: 156 Number of extensions: 1328 Number of successful extensions: 12 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12 Number of HSP's gapped (non-prelim): 0 length of query: 167 length of database: 48,119 effective HSP length: 56 effective length of query: 111 effective length of database: 39,383 effective search space: 4371513 effective search space used: 4371513 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 89 (38.9 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634935|ref|NP_039217.1| ORF FPV254 hypothetical protein [Fowlpox virus] (72 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.325 0.138 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8775 Number of Sequences: 156 Number of extensions: 375 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 72 length of database: 48,119 effective HSP length: 48 effective length of query: 24 effective length of database: 40,631 effective search space: 975144 effective search space used: 975144 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 83 (36.6 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634936|ref|NP_039218.1| ORF FPV255 C4L/C10L-like gene family protein [Fowlpox virus] (418 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters Score E Sequences producing significant alignments: (bits) Value gi|15150446|ref|NP_150441.1| LSDV007 hypothetical protein [lumpy... 167 4e-044 >gi|15150446|ref|NP_150441.1| LSDV007 hypothetical protein [lumpy skin disease virus] Length = 355 Score = 167 bits (424), Expect = 4e-044 Identities = 114/358 (31%), Positives = 179/358 (49%), Gaps = 27/358 (7%) Query: 12 LAVHRFTETRFTSFKKELLVNLGISDLNDIKNIC-EDSKIFFPEKRTELLSIKDRKSKQI 70 + V F + F + KK ++ D+ KNI E+SK+F EK E+++ +R+ KQ Sbjct: 9 IKVKTFNDDYFNNVKKIIM------DMIKYKNIIWEESKVFDHEKGIEVINTNERQCKQY 62 Query: 71 VFENSLNDDLLKKLHA--LIYDELSTVVDSVTVENTVTLIMYEKGDYFARHRDFSTVFSK 128 + DD+ K + L+ E + + ++NT+TLI YEKGD+F HRDF SK Sbjct: 63 IIRGL--DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEKGDFFNTHRDFIHFKSK 120 Query: 129 NIICVHLLLYLEQPETGGETVIYIDNNTSVKLKTDHLFDKTIEHESITVESGRKCVALFD 188 N C HL+LYL GG T I+I NT K D LFDKT+ H S + G K +AL + Sbjct: 121 NCYCYHLVLYLNNTSKGGNTNIHIKPNTIFSTKNDVLFDKTLNHSSDIITDGEKNIALIN 180 Query: 189 VLLEKKLSASTNVIGSIEYLGKK--INLYDRENDLQLCYCDMVIERMTEDKEYSLGMISD 246 V++ K S + I + YL + IN Y+ E + + CYC + + + + + + G+I + Sbjct: 181 VVI-KYNSNNDETIFKLPYLSENNHINFYEDEGNRKFCYCLVTVNNYSTEVD-TFGLILN 238 Query: 247 RSGRCIKSHHNGSIVRYRKEEYGSFDALCI-----YNMNEVDEIWTGDKKHIIWSTIDKK 301 RSG+C+ + I+ K + +FD +C+ YN D + D K+I W ++ Sbjct: 239 RSGKCVLVNKYDDIIT-EKLIFENFDDMCMEISFSYNDIIFDYLKNEDGKNIAWKALNSS 297 Query: 302 TGTSFIPIDPVLYEKLKAISSKEHKEYKD------LRGFCNSRTEYICCSVSKYYFDL 353 + P ++ LK + + KD L G CNS YI +V + YF + Sbjct: 298 CDEIWYPKSKNDFDFLKDLVKYVNNNLKDKINYYVLTGNCNSEIHYINFNVVRCYFSI 355 Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.318 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,818 Number of Sequences: 156 Number of extensions: 2938 Number of successful extensions: 19 Number of sequences better than 1.0e-005: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 1 length of query: 418 length of database: 48,119 effective HSP length: 64 effective length of query: 354 effective length of database: 38,135 effective search space: 13499790 effective search space used: 13499790 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 93 (40.4 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634928|ref|NP_039219.1| ORF FPV256 EFc gene family protein [Fowlpox virus] (122 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.320 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,982 Number of Sequences: 156 Number of extensions: 401 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 122 length of database: 48,119 effective HSP length: 53 effective length of query: 69 effective length of database: 39,851 effective search space: 2749719 effective search space used: 2749719 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634937|ref|NP_039220.1| ORF FPV257 hypothetical protein [Fowlpox virus] (101 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.330 0.140 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,774 Number of Sequences: 156 Number of extensions: 357 Number of successful extensions: 0 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 101 length of database: 48,119 effective HSP length: 51 effective length of query: 50 effective length of database: 40,163 effective search space: 2008150 effective search space used: 2008150 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 86 (37.7 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634931|ref|NP_039221.1| ORF FPV258 C-type lectin gene family protein [Fowlpox virus] (123 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.324 0.138 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,295 Number of Sequences: 156 Number of extensions: 616 Number of successful extensions: 2 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 0 length of query: 123 length of database: 48,119 effective HSP length: 53 effective length of query: 70 effective length of database: 39,851 effective search space: 2789570 effective search space used: 2789570 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 87 (38.1 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634938|ref|NP_039222.1| ORF FPV259 hypothetical protein [Fowlpox virus] (222 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.335 0.144 0.556 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,838 Number of Sequences: 156 Number of extensions: 781 Number of successful extensions: 1 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 0 length of query: 222 length of database: 48,119 effective HSP length: 59 effective length of query: 163 effective length of database: 38,915 effective search space: 6343145 effective search space used: 6343145 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 90 (39.3 bits) BLASTP 2.2.3 [Apr-24-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|9634922|ref|NP_039223.1| ORF FPV260 C-type lectin gene family protein [Fowlpox virus] (205 letters) Database: ./projects/ZooPox/lumpy_skin.faa 156 sequences; 48,119 total letters ***** No hits found ****** Database: ./projects/ZooPox/lumpy_skin.faa Posted date: Jun 18, 2003 2:20 PM Number of letters in database: 48,119 Number of sequences in database: 156 Lambda K H 0.321 0.135 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,849 Number of Sequences: 156 Number of extensions: 833 Number of successful extensions: 3 Number of sequences better than 1.0e-005: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 0 length of query: 205 length of database: 48,119 effective HSP length: 58 effective length of query: 147 effective length of database: 39,071 effective search space: 5743437 effective search space used: 5743437 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 90 (39.3 bits)